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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052365 ID=TCONS_00052365|Name=TCONS_00052365|organism=Clytia hemisphaerica|type=transcript|length=1115bp
GAATTATTTTGCTAATTACCACTGATATAAGGAGATAAAGATCTTTCTTG
TGAGATATTTTATGTGTTGGTTTTATCGTTGCTGCGAAAAATGTCTGAAG
AAACTGATCTGTTTCTATCCCATGATTGGGGTGAAGATGGAAAAACGAAC
CATGATCGAGTGAAAAAAATCAACGAAGCCATCAAAGAGTTGGGTTATAT
CACGTGGTTTGACAATGAGCGAATGGTCGGCAACATGAGAGAACAAATGG
CAAAAGGAATTGATAATACCAAATGTTTTATCGCATTTCTGACGAAGAGA
TATCATGATAAAGTAGTCTTAGGTTCGGATACCGATAATTGTCGAACAGA
GTTCGATTACGCTAGCTCGACGGTTCCCATGGTGGCTGTAGTTCTTGATG
CCTCGATGAGAAACCCTGGAGAGTGGAAAGGAAACATTGGTTTAACACTG
AAGAAGTTTATGTATATTGACATGTCAGGCGATATTGAGACCCCTCTTAC
CTGTCTAAACAACTCAAACTTCTTACAAATAATTTGGATGTCAAGGGTAT
CTTCCCAAATAATCAAGTGCAAAACTCTGGTGCTACCTCGCAGTCGATTT
CCAGTTCAAAGCAAGCCTTGGCaccaaatctaaaaaaaataagttatAAT
TCAAAACCAGCTACGCAGCAACTTACGGCTTCGAGCTTGAATGGTGCCAC
CTGTTCATCTGATTGTGTAATTCAGCCTCAAGATGAACCTTTGATGGAAA
GCACTCATCTTTTGTCGTAAGCTCAAGTAAAATACCTCTAGAGATAATAG
AGGAAGACCTTGGACTTTCCTCGGCTCAGTACTATTTGACCTACCAAGAC
AAGGAGTTAAAATACAAAGATATATTGTTAGAACAAATACTAATTGAATC
GAATTTTCGTTTAGTTTTGCGAAAACGATCTTTTTCAATCTTcgtcaaat
tcaaaatgaaagcCATCACTTTGGAAGTCGAACCAAATGATACTATCGAC
AACgtcaaagccaaaattcaaGATAAAGAAGGAATCCCACCAGATCAACA
ACGTTTGATCTTCGCTGGCAAAGAATTAGAGGATGGCCGAACCCTTTCCG
ACTACAACATCCAAA Run BLAST on NCBI transcript from alignment at scaffold_213:712472..714203- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052365 ID=TCONS_00052365|Name=TCONS_00052365|organism=Clytia hemisphaerica|type=transcript|length=1732bp|location=Sequence derived from alignment at scaffold_213:712472..714203- (Clytia hemisphaerica)
GAATTATTTTGCTAATTACCACTGATATAAGGAGATAAAGATCTTTCTTG
TGAGATATTTTATGTGTTGGTTTTATCGTTGCTGCGAAAAATGTCTGAAG
AAACTGATCTGTTTCTATCCCATGATTGGGGTGAAGATGGAAAAACGAAC
CATGATCGAGTGAAAAAAATCAACGAAGCCATCAAAGAGTTGGGTTATAT
CACGTGGTTTGACAATGAGCGAATGGTCGGCAACATGAGAGAACAAATGG
CAAAAGGAATTGATAATACCAAATGTTTTATCGCATTTCTGACGAAGAGA
TATCATGATAAAGTAGTCTTAGGTTCGGATACCGATAATTGTCGAACAGA
GTTCGATTACGCTAGCTCGACGGTTCCCATGGTGGCTGTAGTTCTTGATG
CCTCGATGAGAAACCCTGGAGAGTGGAAAGGAAACATTGGTTTAACACTG
AAGAAGTTTATGTATATTGACATGTCAGGCGATATTGAGACCCCTCTTAC
CTGTCTAAACAACTCAAACTTCTTACAAATAATTTGGATGTCAAGGGTAT
CTTCCCAAATAATCAAGGTATGTGTTTTTGTACGACAATATTATTTGCTT
TGCTATTTTGTTACAATGGTCTCTTTGAGTTTTACGATTGACTTTCAAGC
GGGGCGTGGAATTTCCGAGTTATTCTTTTCTGAGTTATTTTGCGCATGAC
GTCATAATTTTATTTTTGTGACGTCATTATGACGTAATCTCAAGAATCAT
AACTTTTTTCGAGCTTTTAACTTTTCGAATTATTTGGTGTTATTTAAGTA
ATAAGGTTTTTTTCGTGCCTTTAACTTGACGCCATTTATTAACTCGCAAA
TTAACTCGGGAATTCCAGGCCCCCTTTCAAGCTTTATGTGAACTTCGTCG
GCTATATTTATATTGTTTGATATCATATACTCCTTTTTTTTCTTTAACAG
TGCAAAACTCTGGTGCTACCTCGCAGTCGATTTCCAGTTCAAAGCAAGCC
TTGGCACCAAATCTAAAAAAAATAAGTTATAATTCAAAACCAGCTACGCA
GCAACTTACGGCTTCGAGCTTGAATGGTGCCACCTGTTCATCTGATTGTG
TAATTCAGCCTCAAGATGAACCTTTGATGGAAAGCACTCATCTTTTGTCG
TAAGCTCAAGTAAAATACCTCTAGAGATAATAGAGGAAGACCTTGGACTT
TCCTCGGCTCAGTACTATTTGACCTACCAAGACAAGGAGTTAAAATACAA
AGATATATTGTTAGAACAAATACTAATTGAATCGAATTTTCGTTTAGTTT
TGCGAAAACGATCTTTTTCAATCTTCGTCAAATTCAAAATGAAAGCCATC
ACTTTGGAAGTCGAACCAAATGATACTATCGACAACGTCAAAGCCAAAAT
TCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATCTTCGCTG
GCAAAGAATTAGAGGATGGCCGAACCCTTTCCGACTACAACATCCAAAAG
GAATCCACCCTTAACTTGGTCTTGCCTTCCGTTCCCATTCGGTCACTGAC
AATCTTTGTCAAAACTTTATCTGGTAAAACCATTACTTTAAAAGTCGAAC
CAAATGATACTATCAACAACTTCAAAGCCAAAATTCAAGATAAAGAAGGA
ATCCCTCCAGATCAACAACGTTTGATCTTCTCTGGCAGAAAATTAGAGGA
TGGCCGAACCCTTTCCGACTACAACATCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052365-exon-scaffold_213-1575043694:713637..714203 | TCONS_00052365-exon-scaffold_213-1575043694:713637..714203 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1575043694:712713..713253 | TCONS_00052365-exon-scaffold_213-1575043694:712713..713253 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1575043694:712472..712478 | TCONS_00052365-exon-scaffold_213-1575043694:712472..712478 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1510915933:713637..714203 | TCONS_00052365-exon-scaffold_213-1510915933:713637..714203 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1510915933:712713..713253 | TCONS_00052365-exon-scaffold_213-1510915933:712713..713253 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1510915933:712472..712478 | TCONS_00052365-exon-scaffold_213-1510915933:712472..712478 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1491911889:713637..714203 | TCONS_00052365-exon-scaffold_213-1491911889:713637..714203 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1491911889:712713..713253 | TCONS_00052365-exon-scaffold_213-1491911889:712713..713253 | Clytia hemisphaerica | exon |
| TCONS_00052365-exon-scaffold_213-1491911889:712472..712478 | TCONS_00052365-exon-scaffold_213-1491911889:712472..712478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:712472..714203 - |
Blast
BLAST of TCONS_00052365 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.556e-29 Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query: 797 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
I++ G+ Q L + K+L+ L + I ES LVLR R IFVK K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 138 HSP 2 Score: 115.161 bits (287), Expect = 1.556e-29 Identity = 67/109 (61.47%), Postives = 77/109 (70.64%), Query Frame = 2
Query: 797 IEEDLGLSSAQYYLTYQDKELKYKDILLE-QILIESNFRLVLRKRS-FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
I++ G+ Q L + K+L+ L + I ES LVLR R IFVK K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 214 HSP 3 Score: 105.531 bits (262), Expect = 3.869e-26 Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 2
Query: 932 FSIFVK-FKMKAITLEVEPNDTIDNVKAKIQDKEGIPPDQQRLIFAGKELEDGRTLSDYNIQ 1114
IFVK K ITLEVEP+DTI+NVKAKIQDKEGIPPDQQRLIFAGK+LEDGRTLSDYNIQ
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
The following BLAST results are available for this feature:
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