TCONS_00052390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052390
Unique NameTCONS_00052390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052390 ID=TCONS_00052390|Name=TCONS_00052390|organism=Clytia hemisphaerica|type=transcript|length=1420bp
gtttttgaaaacccgcGATGCTTCTGATTgatcaagcgctgaaattctat
tgtaatgccACGTGGCCTAAGTAGgattcctacctaaccacggtacactt
ttcagcaaaagtacgacatctagccctttgggctttataaatctatgtcc
CCAATACCTTTTTATAGTAGAGAATAAGCAAGGtgaattttgaatcaaaa
tGGAACATCCGTTCAAACGCTCAGAAACAACAGACATCGCGATCAAAATT
CAAGATGAAACATTTTATCTCCATCAACAAATCTTATCTTTTTATTCAAC
AAAATTTCGTGATATTTTACATGAGGACAAACAACAAAATCACCATGGAG
ATGGACAGATTCAAGAGATTTCATTGGTTGTTGATGAGAAGGCAGAAGTT
GAAGACTGGATGAccttctttttgttgttttatccAGAACATTTTCATTT
GATAGACATCGATGTTATAGACGAAGAAAGAATTGACCGTTTGATTACAC
TTGGCCAGAAATACGATGCAGAATGGATTTCGCGGACTCTCGACTCTTAC
TTCACtcaaaaacaagatggcggattCGTAAACAAAGAAGATGAGGAAGA
GGCTATAGATTATGAGAATTGCGAAAGAAACATCAAAGgcaTGCTGATTG
GTTTCAAGTATAAATTCCACGAGTTGACATTAAAATTGATCAATTTCAAT
TATTGTCCAATCAATGAGCTCCAACGATTGGAAGGGTTTGACGATCTTCA
CGatgatttcaaaatcaaattagCCATGTGTCGAGTGACACAAGCAGTCG
ATACAAACCATGTCAAAACCACTTTGGAAATCTTTAACACTATGTTTCGG
CAGACAGAGGAAGGAATAAAGCAGACAAAGGATATAGAGAGCAGACCGTT
AGATGAACAACTTTTCAACGACAGACAAGATTCTGATATGGAGATTCCAA
CCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTACTAGGCTTCTAC
TCTGAGattttgagaacaGAATGGCAACAGGACCTTTCTTCAAGCATGGG
TTTAGGTGATTCGAAATCACCACTGTTTAGTGGTTCTTATGACAAAGCGA
CGGTTAAAATGTTTTTACATCTTATCTATGCAAGTCATCCTGCTGAACTA
ACAGgGAGCACAGATTTCGAGCAGCTCCTATCTTTATTGACACACTACGA
GATTAAATGGCCAATCAAACGAGCAGAAGAGTACCTCATCCAATCAAATC
ATTTcaacaaaaaagataaaagcACGATGTGGGGAATAGATAAAGCCGAA
AATCAGATTCAAGGGCTCCTTTTGGCAGACCAGTATGGACTCGAACGACT
CCAGTTAAACATTATTAAAAATATTGAGAAAGCAAGTTCACTTGCTGAct
ataaaagttttcaaaagctT
Run BLAST on NCBI

transcript from alignment at scaffold_213:1109056..1115497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052390 ID=TCONS_00052390|Name=TCONS_00052390|organism=Clytia hemisphaerica|type=transcript|length=6442bp|location=Sequence derived from alignment at scaffold_213:1109056..1115497- (Clytia hemisphaerica)
GTTTTTGAAAACCCGCGATGCTTCTGATTGATCAAGCGCTGAAATTCTAT
TGTAATGCCACGTGGCCTAAGTAGGATTCCTACCTAACCACGGTACACTT
TTCAGCAAAAGTACGACATCTAGCCCTTTGGGCTTTATAAATCTATGTCC
CCAATACCTTTTTATAGTAGAGAATAAGCAAGGTGAATTTTGAATCAAAA
TGGAACATCCGTTCAAACGCTCAGAAACAACAGACATCGCGATCAAAATT
CAAGATGAAACATTTTATCTCCATCAACAAATCTTATCTTTTTATTCAAC
AAAATTTCGTGATATTTTACATGAGGACAAACAACAAAATCACCATGGAG
ATGGACAGATTCAAGAGATTTCATTGGTTGTTGATGAGAAGGCAGAAGTT
GAAGACTGGATGACCTTCTTTTTGTTGTTTTATCCAGAACATTTTCATTT
GATAGACATCGATGTTATAGGTATGGGAACTTAAATAACAACTGAAACCC
AGAAAGGAATACTTCGGTTGGGACAATTTTACCCCAAAACTTGTACTTAT
AACAGACTAGCCAATATTTGAGGCTAAAACTTATACAATACGTCTCCGAT
CTATCTTGTCCAAACCCTTCTCCATATATTATGCAAATTGTATATCGGAC
GGAGGATCGAGACAAAAATACCATTAGATGCTAGAAATTTCCAACATGTT
TCGGCCAGGGCCGTTTTCAAGGTATATTTCTAGCTAAAAAAATTTCAGTT
TTTTTAAACAAAAAAAAATTTTTTGACGTCAAATAAACGCTTTTTTGTGA
CGTATATTTATGAGCCGTCTGTAAGTGATCTGGAAAAAATGGACGTGTGT
ATTATGCAAATTGGAAATTAAATAGAAGGATTCGAATAATAGATGTTCGA
ATTGGCGAGAGTCCAATATAGTGTTAAATTAAGAATAAGCATTGGAAAAT
TGTAGATTCACGATTTGGGTCATATAAGAATCAACCATTTCTATCGTTTA
AAGTGAATTCGAAAATTAAATCGTCAAAATTCTAATAATATAATTACACA
AAGAATAAATAGACCTTCTGTTTGGTTGGACAAGTTTTAAAAAACTTTCA
ATTTTTTAGATTCCTTTTGGCTAGCGTACTCTGGGGGTCCAAAGATATGG
TGTTCGTCCACCAGTATAGGATTCCCATATTTCTTTCATATCCATTAGAC
ACAAAAAATTAACTATTTGTTTTAGTTGGATAACTTCTAGAAATATAAGA
CGTTCTACATCCCTTTTTTAATTCATGATATGCAACACTAGAGAATCTTC
CAAGAATTTCTAAAAAGTTCAACCCAATACGTCAATTTTTCTATCGTTTA
AGTGACGTATTGGGTTGAACTTTTTGAAAATTCTCAGAAGACTCTCCAGT
GTTGCATATCATGAATAGCATATCTTTGGGGTCAATGTAGATGAAGTTTC
CCATAATCTTTTTTATCCATTAGACGAAGAAAGAATTGACCGTTTGATTA
CACTTGGCCAGAAATACGATGCAGAATGGATTTCGCGGACTCTCGACTCT
TACTTCACTCAAAAACAAGATGGCGGATTCGTAAACAAAGAAGATGAGGA
AGAGGCTATAGATTATGAGAATTGCGAAAGAAACATCAAAGGTAATAGCG
AGTATCTCACTAGCCTGTACTTAGCCTGTACCAATCTCTTCTTCGCTGAC
TGAAAAGATAACGCGAAGTTCGGTTTGTTACGGTTAGGCAAAGTTCCGTG
TCTCAAAAATTTTGACGCAAATCTCCAAATGTCTCTGTGCTGGAGCGTAG
CTTTTTTTAGCATTTAGCATTTCAAAGCAAAAAGATTTAGCAAAAAATCG
AATTAGCGTCAAAACTTGAAAGGCTTCTATCTTCAAGAATCATCAAAGTG
GAGCTCACAAAGAAACGGAGTTGATAATCCCGGTTTTTGGTGAGGTAATT
GCTAGTTTCTTCCGTTTCTTGCTGAGTCAACCATTTTCTGATTAAAGAAG
CCTTTTTAGTGTTCTGACACAAATCCGATTTATCCCGAAAACCCCACATT
TTTGAAATTTTGAAATTCTTTGAAATTTTTCATTTTTAAGGCATGCTGAT
TGGTTTCAAGTATAAATTCCACGAGTTGACATTAAAATTGATCAATTTCA
ATTATTGTCCAATCAATGAGCTCCAACGATTGGAAGGGTTTGACGATCTT
CACGATGATTTCAAAATCAAATTAGCCATGTGTCGAGTGACACAAGCAGT
CGATACAAACCATGTCAAAACCACTTTGGAAATCTTTAACACTATGTTTC
GGCAGACAGAGGAAGGAATAAAGCAGACAAAGGTAACCCATGTATATAGA
CCACGTTCACACGTAACGGTTCCGTTCCACTCTGAAGCAAAATTAAGCCA
TTCTATTGGTTAAATTCAAGTTTTACGACACTTCTAACCAATAGATGATA
GAGTCGATATTTCAGGTTGGTGAAAAAAATACAACAAAAGGAGCTCTTCC
AGAAAAAATATGGGGATATAACAATTTGTGGAAATTCAACCCCCCCCCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCC
CCCCCCTAAACATTGCAACTTTTGACCCCCAGACAACAGGTTTAACCCCA
TGATATTCAAAATTACCCAGGGACAGCAGGTTTAACTCCCGTACAAGCAT
CAGTTGACCCCCTGGACAATTAAAATTACTCACAGACAGCAACTTAAACC
CCTTGAAAAAGCATCAGTTGACCTCCCTTGGACAAGAGCAAATTTTGTAG
ATTTTTCACTACACCCCCTTCGCCAACAATATATCCTCCAATCCCCCAAT
GAAGTGCCCAAGTTCAATAAACTATTTATCATTTCTTTCAGGATATAGAG
AGCAGACCGTTAGATGAACAACTTTTCAACGACAGACAAGATTCTGATAT
GGAGATTCCAACCAAAGAAGGGAAGACATTTTCGGTCCATTCTAAAGTAC
TAGGCTTCTACTCTGAGGTAGGCAACTTATTTTATTTACAATAATTTCAC
GACAAAAGAAGTCGCCAGAGCCAAAAATTAAGAAAGACACGTGCACGTGG
ACTGAAAAGATAAAGGGTAAAGAGTTCGCGGATGAGGGGTATGTGTGGAT
TTTAGCTGAAAAGGTGACCCTTAGAGAGACTTTTTTGAAAAATGTTCTTC
CATTTTTGAAAAAAGTCTTACCCTTAAAGGCGAAAATAAATAAAATGTTG
TGTTTCCGGAATGCGGATGAAGGAAAAAAGCTCCTATGCGGCCGGCCGGA
AAAAACATTATTTTTTGCTATTTTTGATAACTTAAGATCATTGAAATAGA
ACTTTAAAGATATCCTTTATGTGCAAACGGTATGAAGTAAATCTGAATAC
TAATGTATCAACTACTAACGAACAAAATTGATTTACAAGCGGGAATATCA
AACCAAAAGACGTTTGATAGCTTGAATGGTCAACTTGATTTTCTTTATGA
TGAACCCATAGTCTGCGGCCGCGTCAGAAAAATTTTTTGTTTCACCCGGC
CGGTTTCCGGAAACACTACATTTTTTTTATTTTCGCCTTATACATTTTTT
TCTCTCGAAAACAAAAAAAAATCCTAAAAATCGTGAATTTTCCAACCCTC
AGAGAAACTACCTTGAAATTTTCTGATTTTTCCGATCCTTAGAGAGACTT
TGAAAGGTGGAAAAACCCTTACCGTCCGCGCATACCCAAAACCCATTTTT
GCCTAAGTACCCCCCTCCCGGCCAATTCGAAACAACCTCAATTTTATTCA
TAATCAGAAGCAAATGTTAATAGTATGGAAATGTTTAGGAATTTTTTTGC
ACGTAGAAAAACATAGACTAAGGAATTTTCTTCATAGAAATCACGAAAGA
AATTCAAAATATGACAAAAACATTGTCAGCTTCAGTACACAAGTTGAGGC
CAGCCAGTCTTATAATTTTCTCATCGCATTTTCTTTTAGATTTTGAGAAC
AGAATGGCAACAGGACCTTTCTTCAAGCATGGGTTTAGGTGATTCGAAAT
CACCACTGTTTAGTGGTTCTTATGACAAAGCGACGGTTAAAATGTTTTTA
CATCTTATCTATGCAAGTCATCCTGCTGAACTAACAGGTAAGCCTACAGC
TTATTTCTGATTTAACGGATTTAGAAATTTCACAATTTTCGCGACTCACT
TTCGCTACATGGTTGGTTGGGTTAGAATGTGGGTGGGGGGTGGTTTGGTA
ATTTTTTTTCGCGTCTTTTTTTTGCATGGACCAAAAGATTTTTTGTGTGA
GTCTAATATTTTTGCGTGGGTCCAAAGTTTGATAATTTAGTTTATCCTTT
ATACTCTATTCTATACATTTCAAGGATATCAACATAATTACAGTCACCAG
CGCCAAAAGATTTACCCATGCTCAAAATTTGACCACGCAAAAACACTTTA
AATTTACCCACTTACTCACATGTACCCACTCCACCACGCACCCACTCAGC
CCGATTCGTCCATCAATTTAGCTGACTAAATTTTCGCTAATGAAAATTCC
CACAAATGGCCTGACTTATGAAACTTTAACAAACATTAACAAAGAAAAAG
ACACTTTTTACCTTTGAAAATTTTCATGACTTTCCCAGCTGGCACACAAC
GTTGTTTCGACATTTTTCTAACGTTCACAACGTCCATATAACGTGTAAAC
AAAAAAACGTTGAAACAACGTTGTGTGCCAGCTGGGATTGCACCACCCCC
TTCTCACAGATCGAGTAGGTTTTTGTTAGACACTGGTGTTAAAAACAACA
AAACTCGATTGGGATTGATATAGCTGGGTATTTGAATTCCATGGTTTTCA
AGTCAGAAAATTATTACTGAACTTTAATAGATATTCGAAGAGACGATACC
ACTGAAATCTTTGATCGGAGATTTTTGAAAGTGGAACCCTAATGGTAGCA
CTACTCAATGAGGGTGAAAACTTTTTAAATGGAAAATTTCTTTGAATTAT
AAATTGACCCACATCGAGTAGTGCTATCATTAGGGTATCATTTTTCGAAA
AACTGCGATCAAATAAGCTGGATATAGCTCAGGCCATGATATATAAAGGT
CAGTAAAACTTACCCGCAATGATCGCGAAAATGAGAAATGTGTCCAAATG
TTTACCAATTTCTTGTAGTACTTGAAGTAAGGTATACGTTTCATATGAAA
CAGATTTCGAACAGTTCTAATCCTCATTGACACACTGCGAGAACCAATAG
TCACAATGAATTCAATTTAATTTTAGGGAGCACAGATTTCGAGCAGCTCC
TATCTTTATTGACACACTACGAGATTAAATGGCCAATCAAACGAGCAGAA
GAGTACCTCATCCAATCAAATCATTTCAACAAAAAAGATAAAAGCACGAT
GTGGGGAATAGATAAAGCCGAAAATCAGATTCAAGGGCTCCTTTTGGCAG
ACCAGTATGGACTCGAACGACTCCAGTTAAACATTATTAAAAATATTGAG
AAAGCAAGTTCACTTGCTGACTATAAAAGTTTTCAAAAGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033120XLOC_033120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052390-exon-scaffold_213-1575043694:1115028..1115497TCONS_00052390-exon-scaffold_213-1575043694:1115028..1115497Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1575043694:1113857..1114024TCONS_00052390-exon-scaffold_213-1575043694:1113857..1114024Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1575043694:1113166..1113407TCONS_00052390-exon-scaffold_213-1575043694:1113166..1113407Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1575043694:1111581..1111706TCONS_00052390-exon-scaffold_213-1575043694:1111581..1111706Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1575043694:1110461..1110608TCONS_00052390-exon-scaffold_213-1575043694:1110461..1110608Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1575043694:1109056..1109321TCONS_00052390-exon-scaffold_213-1575043694:1109056..1109321Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1510915933:1115028..1115497TCONS_00052390-exon-scaffold_213-1510915933:1115028..1115497Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1510915933:1113857..1114024TCONS_00052390-exon-scaffold_213-1510915933:1113857..1114024Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1510915933:1113166..1113407TCONS_00052390-exon-scaffold_213-1510915933:1113166..1113407Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1510915933:1111581..1111706TCONS_00052390-exon-scaffold_213-1510915933:1111581..1111706Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1510915933:1110461..1110608TCONS_00052390-exon-scaffold_213-1510915933:1110461..1110608Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1510915933:1109056..1109321TCONS_00052390-exon-scaffold_213-1510915933:1109056..1109321Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1491911889:1115028..1115497TCONS_00052390-exon-scaffold_213-1491911889:1115028..1115497Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1491911889:1113857..1114024TCONS_00052390-exon-scaffold_213-1491911889:1113857..1114024Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1491911889:1113166..1113407TCONS_00052390-exon-scaffold_213-1491911889:1113166..1113407Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1491911889:1111581..1111706TCONS_00052390-exon-scaffold_213-1491911889:1111581..1111706Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1491911889:1110461..1110608TCONS_00052390-exon-scaffold_213-1491911889:1110461..1110608Clytia hemisphaericaexon
TCONS_00052390-exon-scaffold_213-1491911889:1109056..1109321TCONS_00052390-exon-scaffold_213-1491911889:1109056..1109321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1109056..1115497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.172396	0.156848	0	0.240242	0	1.01237	1.95222	8.2456	14.8872	8.4419	6.88152	5.62735	6.26273	24.6955	20.2248	18.4971	7.27002	20.3199	18.9338	3.08269	4.06052	10.6688	25.4161	119.824	79.3706	3.99688	2.32684	51.9687	28.7516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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