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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052392 ID=TCONS_00052392|Name=TCONS_00052392|organism=Clytia hemisphaerica|type=transcript|length=1099bp
AAGATAAACGCCCAAATAACGCCCATGAAAAGAAGCAAATGCATTGCGCG
CGCGAATGTTTTCGTTCGATTTCTTTTCATTCTTCACaacaaagtttgtt
tacatttgtgaGAATTTTCAATAAGCGTTTTTCATTTCGATTCCAAGTTT
CTACATTTTATTCTACTTATATTATACTACAATATTCAATGGGGAAAGTT
CAATCAAAGACTGAGCCTCTCAATACCGATAAACGAAGTTCCGTTAGTTC
CCAAAAAGACGCAGATGATGGATCGAACGGTCCTAACGAAGATGGCAAAG
AAGGTGAAGATTCTAGCACCAACCGAAAAGATTTAATAATCGCCTTCAAT
GAAGATTTCACACAAATTGATGTCAACAAAGAGAAGAGAGGAGGGTCGAC
TCGTCGCATGAGTCGaatggaaaaattgaaaagtcgaaaattacCTCATG
TTATGAGAAttcaaattattgaagaagGAGATGAAGCTGAAGACAATTGT
TCGGTCCATAAATCAAGCGATCATCATATGACTCATTTGGAGAAAATCAA
ACGACGAAAAATGCCGGCTGGTAAACGTATCTTTGGAGACCATTATGTCG
AATAGAAAGtcgattatttttcaaaaAATGACGAAAAAAGTATCTATAAC
ATAAAATTGAGACAATtgagggaacttattttggcgagaaccaATTTTGG
TGAGCagaagaaatcttgaaaatttttgtattggtgagaacttattttgg
cgaattacAGGCTAAATCTGTCcaattttgccttattttgagcaattttt
gaTGAGTTTCAGAGGTTATTTTtaccaaaagaatttttttgacgAGTAAg
taaattatttaattttgacgagaaccgacgaattttgtcgaaactcgcca
aaattagttctcgccaaaattagttccctggTGCTAGAAAAAGAAATCGA
AAGCCTGTAAATAGTTTAATTTTCCAATGTTtgaatatttgtttagataa
aCGATAATCCACTTCAAATGATTTGACTGTTCTTTTTCTCTCTATTCAAC
CCAGCCTAAAAGCTACATTAACCAATCGATCCAAATtttttactctcgg Run BLAST on NCBI protein sequence of TCONS_00052392-protein >TCONS_00052392-protein ID=TCONS_00052392-protein|Name=TCONS_00052392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
DKRPNNAHEKKQMHCARECFRSISFHSSQQSLFTFVRIFNKRFSFRFQVS
TFYSTYIILQYSMGKVQSKTEPLNTDKRSSVSSQKDADDGSNGPNEDGKE
GEDSSTNRKDLIIAFNEDFTQIDVNKEKRGGSTRRMSRMEKLKSRKLPHV
MRIQIIEEGDEAEDNCSVHKSSDHHMTHLEKIKRRKMPAGKRIFGDHYVE Run BLAST on NCBI transcript from alignment at scaffold_213:1207954..1211598- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052392 ID=TCONS_00052392|Name=TCONS_00052392|organism=Clytia hemisphaerica|type=transcript|length=3645bp|location=Sequence derived from alignment at scaffold_213:1207954..1211598- (Clytia hemisphaerica)
AAGATAAACGCCCAAATAACGCCCATGAAAAGAAGCAAATGCATTGCGCG
CGCGAATGTTTTCGTTCGATTTCTTTTCATTCTTCACAACAAAGTTTGTT
TACATTTGTGAGAATTTTCAATAAGCGTTTTTCATTTCGATTCCAAGTTT
CTACATTTTATTCTACTTATATTATACTACAATATTCAATGGGGAAAGTT
CAATCAAAGACTGAGCCTCTCAATACCGATAAACGAAGTTCCGTTAGTTC
CCAAAAAGACGCAGATGATGGATCGAACGGTCCTAACGAAGATGGCAAAG
AAGGTGAAGATTCTAGCACCAACCGAAAAGATTTAATAATCGCCTTCAAT
GAAGATTTCACACAAATTGATGTCAACAAAGAGAAGAGAGGAGGGTCGAC
TCGTCGCATGAGTCGAATGGAAAAATTGAAAAGTCGAAAATTACCTCATG
TTATGAGAATTCAAATTATTGAAGAAGGAGATGAAGCTGAAGGTAATCAA
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTCGGCGTTCGATTCG
TTCGATTGACATCGTCTGGTTGAAAGGAAGGGGTCATGGCCTAAAACTGA
CAGACACAAAAAAAGGCATTCAAAAAGAGAAAGAGAGAGATATGATATAT
CTAGAATAATAAGAAAAATACTCACAAAATCAGGGAGAAAGAATAAAGGA
ACTTAAATTCTGGCTTAGATTACCCAAAAAAATCCAAGAAGACTTGTGAA
AGCACTTTCGCTTTGACCCGAACAACCAAATTATTTACCTTGATCACGCC
TTGTAACCAAATCACGAAATAAGGGCGTAAGATAAACGCCCAAATAACGC
CCATGAAAAGAAGCAAATGCATTGCGCGCGCGAATGTTTTCGTTCGATTT
CTTTTCATTCTTCACAACAAAGTTTGTTTACATTTGTGAGAATTTTCAAT
AAGCGTTTTTCATTTCGATTCCAAGTTTCTACATTTTATTCTACTTATAT
TATACTACAATATTCAATGGGGAAAGTTCAATCAAAGACTGAGCCTCTCA
ATACCGATAAACGAAGTTCCGTTAGTTCCCAAAAAGACGCAGATGATGGA
TCGAACGGTCCTAACGAAGATGGCAAAGAAGGTGAAGATTCTAACACCAA
CCGAAAAGATTTAATAATCGCCTTCAATGAAGATTTCACACAAATTGATG
TCAACAAAGAGAAGAGAGGAGGGTCGACTCGTCGCATGAGTCGAATGGAA
AAATTGAAAAGTCGAAAATTACCTCATGTTATGAGAATTCAAATTATTGA
AGAAGGAGATGAAGCTGAAGGTAATCAAATTCAACCATCTGCTTTGATAT
TTTTTTAGCGTTTGCTAGCGCCTGGGGGGGGCACTCATATGATTTGGCCT
AAGTCATGTGCAGCGCTTAAGGGTTTTTCAGCATCCCAAAATGCACTGTA
AGGATTTCTGTGAGATTGCCATTGCACTGCAAGGGTCGAATTTTAAAAGC
AGATTTTGCGCAGCACATACCGTCGTTTCGAAATCGTTTGCCCCCCCGGA
CTGGCGTTGTCTGTACCCGATATCTACGATACGGCTAATTTCAAAATTCA
TTACAGTATCGTAGAGGGTCTGTGTGTAAAAATTGTATCCGGGCCCGGTT
GTCTGGGGCTACACTGTGACAATTATGACAAATTTGGGGTCTTGCGGTGT
CCTTAGACAACCTCGGTCCATGCATAGTCTCTTCTTATATTAATGAGGAG
ATTAGCCCCCCGGGGATACTAGGTTTGCGAGATGATGGAGTGGTGCCGCC
CGATTTTTGAAAATCGGAAATTTTAGGGTCTTAAAATCGAAGAAAAAATA
ACGAAATTTTGTAGATTTTAGGACTCTTACCGAAATTTGGCCTTTTTCGG
GGTAAATATTAGTAGTTTCACTTCTTTTGTGACCCTTCTGGGGCGACTGA
AATTAGAAATTGTGATTTTTGCGACCCTTAGCGGGACTGTGAAGGTCCAA
AAAAGGGACCCTTAAGGGATGCACATATACGTACCCTCCACTTGGCCTAA
GTACCCCCCCCCCCCAGGGATTAGCCCGGGCTTGTGGGGAAAAAAAAAAA
AAAAAAGAAACCCCCCCCCCCCCATGGATTAGCCCTGGACGTTGGGGAAA
AAAGATAACTATAAGTCATCCCTCCTCGTAGAAAGATAATTTTGAGTCAT
CGCAGCCACCGTCGCTTAAAAATCGACAAACAAAGTCAACCCCACTAACA
CCACTTTTTCATGTTACTGAGAGGTAATAAGGTACCAGCTTCATTGAGTT
TGAATATTTAACCTTTCTAAAGCAAGAAAAAGTGAAACCTTAAATTTGCC
CCGGACACACGAGTCACTTGTTTTGGATGGAAGTCCAGGAGTTTGGATCT
AGCTCCTTCGGGACTTTGAAATCAAAGATATGTTCGAGTAATGACAATGT
CATGTCAGCCTACCACTTACTTTTTTTTCAAATTCTACCTCCACTTATTT
AAATTTTCTAGACAATTGTTCGGTCCATAAATCAAGCGATCATCATATGA
CTCATTTGGAGAAAATCAAACGACGAAAAATGCCGGCTGGTAAACGTATC
TTTGGAGACCATTATGTCGAATAGAAAGTCGATTATTTTTCAAAAGTAGG
ATAGAGTTTTGTACTTTTCTACTCTATTTTTTCTTCCAAGCTCAATCTAA
TTGATAGCTCACTAGTCCATTATAGATACGCGACCTTATACAGTAATCTA
AAAAAGTCTCGAAGAAGAGCTCCAGTGCTTTTAGGTGCCTAAAACTTTAA
TTCTTTGCCTTAATATCTTCAGAATGACGAAAAAAGTATCTATAACATAA
AATTGAGACAATTGAGGGAACTTATTTTGGCGAGAACCAATTTTGGTGAG
CAGAAGAAATCTTGAAAATTTTTGTATTGGTGAGAACTTATTTTGGCGAA
TTACAGGCTAAATCTGTCCAATTTTGCCTTATTTTGAGCAATTTTTGATG
AGTTTCAGAGGTTATTTTTACCAAAAGAATTTTTTTGACGAGTAAGTAAA
TTATTTAATTTTGACGAGAACCGACGAATTTTGTCGAAACTCGCCAAAAT
TAGTTCTCGCCAAAATTAGTTCCCTGGTGCTAGAAAAAGAAATCGAAAGC
CTGTAAATAGTTTAATTTTCCAATGTTTGAATATTTGTTTAGATAAACGA
TAATCCACTTCAAATGATTTGACTGTTCTTTTTCTCTCTATTCAACCCAG
CCTAAAAGCTACATTAACCAATCGATCCAAATTTTTTACTCTCGG Coding sequence (CDS) from alignment at scaffold_213:1207954..1211598- >TCONS_00052392 ID=TCONS_00052392|Name=TCONS_00052392|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_213:1207954..1211598- (Clytia hemisphaerica)
ACAATTGTTCGGTCCATAAATCAAGCGATCATCATATGACTCATTTGGAG
AAAATCAAACGACGAAAAATGCCGGCTGGTAAACGTATCTTTGGAGACCA
TTATGTCGAATAGGATAAACGCCCAAATAACGCCCATGAAAAGAAGCAAA
TGCATTGCGCGCGCGAATGTTTTCGTTCGATTTCTTTTCATTCTTCACAA
CAAAGTTTGTTTACATTTGTGAGAATTTTCAATAAGCGTTTTTCATTTCG
ATTCCAAGTTTCTACATTTTATTCTACTTATATTATACTACAATATTCAA
TGGGGAAAGTTCAATCAAAGACTGAGCCTCTCAATACCGATAAACGAAGT
TCCGTTAGTTCCCAAAAAGACGCAGATGATGGATCGAACGGTCCTAACGA
AGATGGCAAAGAAGGTGAAGATTCTAGCACCAACCGAAAAGATTTAATAA
TCGCCTTCAATGAAGATTTCACACAAATTGATGTCAACAAAGAGAAGAGA
GGAGGGTCGACTCGTCGCATGAGTCGAATGGAAAAATTGAAAAGTCGAAA
ATTACCTCATGTTATGAGAATTCAAATTATTGAAGAAGGAGATGAAGCTG
AAGACAATTGTTCGGTCCATAAATCAAGCGATCATCATATGACTCATTTG
GAGAAAATCAAACGACGAAAAATGCCGGCTGGTAAACGTATCTTTGGAGA
CCATTATGTCGAATAGGATAAACGCCCAAATAACGCCCATGAAAAGAAGC
AAATGCATTGCGCGCGCGAATGTTTTCGTTCGATTTCTTTTCATTCTTCA
CAACAAAGTTTGTTTACATTTGTGAGAATTTTCAATAAGCGTTTTTCATT
TCGATTCCAAGTTTCTACATTTTATTCTACTTATATTATACTACAATATT
CAATGGGGAAAGTTCAATCAAAGACTGAGCCTCTCAATACCGATAAACGA
AGTTCCGTTAGTTCCCAAAAAGACGCAGATGATGGATCGAACGGTCCTAA
CGAAGATGGCAAAGAAGGTGAAGATTCTAGCACCAACCGAAAAGATTTAA
TAATCGCCTTCAATGAAGATTTCACACAAATTGATGTCAACAAAGAGAAG
AGAGGAGGGTCGACTCGTCGCATGAGTCGAATGGAAAAATTGAAAAGTCG
AAAATTACCTCATGTTATGAGAATTCAAATTATTGAAGAAGGAGATGAAG
CTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052392-exon-scaffold_213-1575043694:1211107..1211598 | TCONS_00052392-exon-scaffold_213-1575043694:1211107..1211598 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1575043694:1208604..1208737 | TCONS_00052392-exon-scaffold_213-1575043694:1208604..1208737 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1575043694:1207954..1208426 | TCONS_00052392-exon-scaffold_213-1575043694:1207954..1208426 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1510915933:1211107..1211598 | TCONS_00052392-exon-scaffold_213-1510915933:1211107..1211598 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1510915933:1208604..1208737 | TCONS_00052392-exon-scaffold_213-1510915933:1208604..1208737 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1510915933:1207954..1208426 | TCONS_00052392-exon-scaffold_213-1510915933:1207954..1208426 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1491911889:1211107..1211598 | TCONS_00052392-exon-scaffold_213-1491911889:1211107..1211598 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1491911889:1208604..1208737 | TCONS_00052392-exon-scaffold_213-1491911889:1208604..1208737 | Clytia hemisphaerica | exon |
| TCONS_00052392-exon-scaffold_213-1491911889:1207954..1208426 | TCONS_00052392-exon-scaffold_213-1491911889:1207954..1208426 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1207954..1211598 - |
Blast
The following BLAST results are available for this feature:
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