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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052404 ID=TCONS_00052404|Name=TCONS_00052404|organism=Clytia hemisphaerica|type=transcript|length=949bp
AGAGAATCTTGTGTTTGTCCCATGACTATCAGTGAAGGCcttcatttttt
tgctgttgAAGGGAGGCCCATTGTCCGAGATTTGGGTTTCTGGGTAGCCA
TACTCGTCGTATATTTCTCCTAGCGCTGGAATAACCTTATCAGCTTTTGT
GGACGAAACTAGTTTGGCAGCAGGGTATCTAGACCCTATATCCTGTACAA
TCACTACATGCTTTGATGATGGCATTGGGCCGAACAGGTCCACAGCTACG
GTCTCCCAGCATCGCTCAGGCACTTTATGGCCAGTTATAGgctcttttgt
tttcttgtCGACAAATATGGCACATTCATTGCATTCGGAGACGAAACTTT
TTACTTTGTTGAACATATCatgaaagaaaaagtgaaatctAAGTCTTCGT
TCAATTCCGCTTCGCCCAGGATGCGAACCTCTATGTGCAAGACTAATGGC
CAGATCGTGTAACGATTTTGGCAGAACAATTCGATCTTCTTTGAAGATGA
TGCCATTTGCAACGATGGTCAGTTCTTCGAGTATGGAGTTGAATCTCTTA
ACCTCCCTTGAAACCCCGTCTGGAATTTTGGAATATCCCTTCCTGAGATA
TTCTTGTATTTTACTCAGAGTCTCGTCTTTGCTTGTTTCCTTTGTAATTT
TTGCTAAGGTGATTTGGTCAGTTCTTGGCGTTGTGTGAAGCGCATAGAGA
AGGTTGTTTAGTTCGTTGCATTCCCTCCTTTGTTCAGTAGGTAAACTGGA
TAATTCTCTTGCGTGTCTACTCATGTAGTCCACCTGATTAAGCGAGCCTT
TTTGGTATTCGACGATGAAAGGGATGTCTTGGTGGTTCAGTTTTATTCTT
CTGGTCCTAATTGAGCCATTGCGACGGCCATTGAATATGTGCACCAAAGG
TTTATGGTCTGTGACCACCTTGATGAGAGTGGGCGAGCCCACAACATAT Run BLAST on NCBI protein sequence of TCONS_00052404-protein >TCONS_00052404-protein ID=TCONS_00052404-protein|Name=TCONS_00052404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
YVVGSPTLIKVVTDHKPLVHIFNGRRNGSIRTRRIKLNHQDIPFIVEYQK
GSLNQVDYMSRHARELSSLPTEQRRECNELNNLLYALHTTPRTDQITLAK
ITKETSKDETLSKIQEYLRKGYSKIPDGVSREVKRFNSILEELTIVANGI
IFKEDRIVLPKSLHDLAISLAHRGSHPGRSGIERRLRFHFFFHDMFNKVK
SFVSECNECAIFVDKKTKEPITGHKVPERCWETVAVDLFGPMPSSKHVVI
VQDIGSRYPAAKLVSSTKADKVIPALGEIYDEYGYPETQISDNGPPFNSK
KMKAFTDSHGTNTRFS Run BLAST on NCBI transcript from alignment at scaffold_213:108853..109801 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052404 ID=TCONS_00052404|Name=TCONS_00052404|organism=Clytia hemisphaerica|type=transcript|length=949bp|location=Sequence derived from alignment at scaffold_213:108853..109801 (Clytia hemisphaerica)
ATATGTTGTGGGCTCGCCCACTCTCATCAAGGTGGTCACAGACCATAAAC
CTTTGGTGCACATATTCAATGGCCGTCGCAATGGCTCAATTAGGACCAGA
AGAATAAAACTGAACCACCAAGACATCCCTTTCATCGTCGAATACCAAAA
AGGCTCGCTTAATCAGGTGGACTACATGAGTAGACACGCAAGAGAATTAT
CCAGTTTACCTACTGAACAAAGGAGGGAATGCAACGAACTAAACAACCTT
CTCTATGCGCTTCACACAACGCCAAGAACTGACCAAATCACCTTAGCAAA
AATTACAAAGGAAACAAGCAAAGACGAGACTCTGAGTAAAATACAAGAAT
ATCTCAGGAAGGGATATTCCAAAATTCCAGACGGGGTTTCAAGGGAGGTT
AAGAGATTCAACTCCATACTCGAAGAACTGACCATCGTTGCAAATGGCAT
CATCTTCAAAGAAGATCGAATTGTTCTGCCAAAATCGTTACACGATCTGG
CCATTAGTCTTGCACATAGAGGTTCGCATCCTGGGCGAAGCGGAATTGAA
CGAAGACTTagatttcactttttctttcatGATATGTTCAACAAAGTAAA
AAGTTTCGTCTCCGAATGCAATGAATGTGCCATATTTGTCGacaagaaaa
caaaagagcCTATAACTGGCCATAAAGTGCCTGAGCGATGCTGGGAGACC
GTAGCTGTGGACCTGTTCGGCCCAATGCCATCATCAAAGCATGTAGTGAT
TGTACAGGATATAGGGTCTAGATACCCTGCTGCCAAACTAGTTTCGTCCA
CAAAAGCTGATAAGGTTATTCCAGCGCTAGGAGAAATATACGACGAGTAT
GGCTACCCAGAAACCCAAATCTCGGACAATGGGCCTCCCTTcaacagcaa
aaaaatgaagGCCTTCACTGATAGTCATGGGACAAACACAAGATTCTCT Coding sequence (CDS) from alignment at scaffold_213:108853..109801 >TCONS_00052404 ID=TCONS_00052404|Name=TCONS_00052404|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_213:108853..109801 (Clytia hemisphaerica)
TATGTTGTGGGCTCGCCCACTCTCATCAAGGTGGTCACAGACCATAAACC
TTTGGTGCACATATTCAATGGCCGTCGCAATGGCTCAATTAGGACCAGAA
GAATAAAACTGAACCACCAAGACATCCCTTTCATCGTCGAATACCAAAAA
GGCTCGCTTAATCAGGTGGACTACATGAGTAGACACGCAAGAGAATTATC
CAGTTTACCTACTGAACAAAGGAGGGAATGCAACGAACTAAACAACCTTC
TCTATGCGCTTCACACAACGCCAAGAACTGACCAAATCACCTTAGCAAAA
ATTACAAAGGAAACAAGCAAAGACGAGACTCTGAGTAAAATACAAGAATA
TCTCAGGAAGGGATATTCCAAAATTCCAGACGGGGTTTCAAGGGAGGTTA
AGAGATTCAACTCCATACTCGAAGAACTGACCATCGTTGCAAATGGCATC
ATCTTCAAAGAAGATCGAATTGTTCTGCCAAAATCGTTACACGATCTGGC
CATTAGTCTTGCACATAGAGGTTCGCATCCTGGGCGAAGCGGAATTGAAC
GAAGACTTagatttcactttttctttcatGATATGTTCAACAAAGTAAAA
AGTTTCGTCTCCGAATGCAATGAATGTGCCATATTTGTCGacaagaaaac
aaaagagcCTATAACTGGCCATAAAGTGCCTGAGCGATGCTGGGAGACCG
TAGCTGTGGACCTGTTCGGCCCAATGCCATCATCAAAGCATGTAGTGATT
GTACAGGATATAGGGTCTAGATACCCTGCTGCCAAACTAGTTTCGTCCAC
AAAAGCTGATAAGGTTATTCCAGCGCTAGGAGAAATATACGACGAGTATG
GCTACCCAGAAACCCAAATCTCGGACAATGGGCCTCCCTTcaacagcaaa
aaaatgaagGCCTTCACTGATAGTCATGGGACAAACACAAGATTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052404-exon-scaffold_213-1491911889:108853..109801 | TCONS_00052404-exon-scaffold_213-1491911889:108853..109801 | Clytia hemisphaerica | exon |
| TCONS_00052404-exon-scaffold_213-1510915933:108853..109801 | TCONS_00052404-exon-scaffold_213-1510915933:108853..109801 | Clytia hemisphaerica | exon |
| TCONS_00052404-exon-scaffold_213-1575043694:108853..109801 | TCONS_00052404-exon-scaffold_213-1575043694:108853..109801 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:108853..109801 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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