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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052422 ID=TCONS_00052422|Name=TCONS_00052422|organism=Clytia hemisphaerica|type=transcript|length=1122bp
GTCTTGGTAATGATTATAAGCTTCAGTACTAGCAAAATGGGATTTAAGCT
TCGCATCAACTCGgtctttcgaaattttcaacatttcttGCTGAAGATAA
TTGGCAGTGTTTTTCTTTGGTACAAATAAGATAATGTAAAGTTTACTGCT
ATAGAATATCATCACAAACAGTAAGTTTGAGACGATCAAAATCAACACTC
GGGCTACGATTTTGATGTCCTTGTCCTTTTGAAGATAAACAAAGGGAAAA
TAAGTGATGTATGTGACTATGCATGTAAACGATGAATAAACTATGGGCAT
TGCTTCATTGAAAGGTCCTGGGAGATCCCGACCACGATATGCTTGGATGG
TTGTCATAAGATAGAGAATGATAATGAAGCCGATTTGAATAGTCGTATGT
ACTTGTGTATCACATCTGTAGCTCCTCATGTACTTTGAGTTGTCAGTATC
CACTGTTAACTTGATGGGTTTTGAGTGTAAACTTAACAGTAGAAAACCCA
TGTCTATGAAAATCAAGAGAGTGACCAATGAAATCTGACTTCCCAACATT
CTTCGTTTTGTTCGTTTCGAAAGACGTACTTTAGAATGGAACGCCAGCAG
TAAGTTTTGACATTTGATTAAGATTAACGTATGTGGGCAAAAGACCAGCA
GGGAAATTATAAGTAGCTCCACCAGACATGTACTGGTGGATGTTTTTGAC
ACCATAAATGGTAGAAGCATTGTGGTGAATAAACATATCATGCAAATAAT
ATGCATGACTGTAATGGGAAAATTCGATCCACGCACGACAggtgtttttc
taaatctcacGAAAACCAACAATGTGAAAAAGCAAAAGATAAAACCAATT
ATACTCAAACCCATCGCAAGtttcaaaccattttgattATAAAATTGAAT
GAACTTGTCACTATAAGGATCATAACAAGAATCACGATTTCGAGTTGACA
GTGTAAATTTTGGACAAGGAGTGCAAGTGTTATGCAGAGTGGAATTATTT
TTTGGCTGGAAATAATTTTGCTTGCATTTCTGGCAATACCAGCCATAACT
TTGGTTATCCGAAATGCTATGAATTTTGAGAGATATTTTTCCAAAGATGT
TTTCTTTTCCAGCGTGGCAGGA Run BLAST on NCBI protein sequence of TCONS_00052422-protein >TCONS_00052422-protein ID=TCONS_00052422-protein|Name=TCONS_00052422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
SCHAGKENIFGKISLKIHSISDNQSYGWYCQKCKQNYFQPKNNSTLHNTC
TPCPKFTLSTRNRDSCYDPYSDKFIQFYNQNGLKLAMGLSIIGFIFCFFT
LLVFVRFRKTPVVRGSNFPITVMHIICMICLFTTMLLPFMVSKTSTSTCL
VELLIISLLVFCPHTLILIKCQNLLLAFHSKVRLSKRTKRRMLGSQISLV
TLLIFIDMGFLLLSLHSKPIKLTVDTDNSKYMRSYRCDTQVHTTIQIGFI
IILYLMTTIQAYRGRDLPGPFNEAMPIVYSSFTCIVTYITYFPFVYLQKD
KDIKIVARVLILIVSNLLFVMIFYSSKLYIILFVPKKNTANYLQQEMLKI
SKDRVDAKLKSHFASTEAYNHYQD Run BLAST on NCBI transcript from alignment at scaffold_213:721743..722864 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052422 ID=TCONS_00052422|Name=TCONS_00052422|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_213:721743..722864 (Clytia hemisphaerica)
TCCTGCCACGCTGGAAAAGAAAACATCTTTGGAAAAATATCTCTCAAAAT
TCATAGCATTTCGGATAACCAAAGTTATGGCTGGTATTGCCAGAAATGCA
AGCAAAATTATTTCCAGCCAAAAAATAATTCCACTCTGCATAACACTTGC
ACTCCTTGTCCAAAATTTACACTGTCAACTCGAAATCGTGATTCTTGTTA
TGATCCTTATAGTGACAAGTTCATTCAATTTTATaatcaaaatggtttga
aaCTTGCGATGGGTTTGAGTATAATTGGTTTTATCTTTTGCTTTTTCACA
TTGTTGGTTTTCgtgagatttagaaaaacaccTGTCGTGCGTGGATCGAA
TTTTCCCATTACAGTCATGCATATTATTTGCATGATATGTTTATTCACCA
CAATGCTTCTACCATTTATGGTGTCAAAAACATCCACCAGTACATGTCTG
GTGGAGCTACTTATAATTTCCCTGCTGGTCTTTTGCCCACATACGTTAAT
CTTAATCAAATGTCAAAACTTACTGCTGGCGTTCCATTCTAAAGTACGTC
TTTCGAAACGAACAAAACGAAGAATGTTGGGAAGTCAGATTTCATTGGTC
ACTCTCTTGATTTTCATAGACATGGGTTTTCTACTGTTAAGTTTACACTC
AAAACCCATCAAGTTAACAGTGGATACTGACAACTCAAAGTACATGAGGA
GCTACAGATGTGATACACAAGTACATACGACTATTCAAATCGGCTTCATT
ATCATTCTCTATCTTATGACAACCATCCAAGCATATCGTGGTCGGGATCT
CCCAGGACCTTTCAATGAAGCAATGCCCATAGTTTATTCATCGTTTACAT
GCATAGTCACATACATCACTTATTTTCCCTTTGTTTATCTTCAAAAGGAC
AAGGACATCAAAATCGTAGCCCGAGTGTTGATTTTGATCGTCTCAAACTT
ACTGTTTGTGATGATATTCTATAGCAGTAAACTTTACATTATCTTATTTG
TACCAAAGAAAAACACTGCCAATTATCTTCAGCaagaaatgttgaaaatt
tcgaaagacCGAGTTGATGCGAAGCTTAAATCCCATTTTGCTAGTACTGA
AGCTTATAATCATTACCAAGAC Coding sequence (CDS) from alignment at scaffold_213:721743..722864 >TCONS_00052422 ID=TCONS_00052422|Name=TCONS_00052422|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_213:721743..722864 (Clytia hemisphaerica)
TCCTGCCACGCTGGAAAAGAAAACATCTTTGGAAAAATATCTCTCAAAAT
TCATAGCATTTCGGATAACCAAAGTTATGGCTGGTATTGCCAGAAATGCA
AGCAAAATTATTTCCAGCCAAAAAATAATTCCACTCTGCATAACACTTGC
ACTCCTTGTCCAAAATTTACACTGTCAACTCGAAATCGTGATTCTTGTTA
TGATCCTTATAGTGACAAGTTCATTCAATTTTATaatcaaaatggtttga
aaCTTGCGATGGGTTTGAGTATAATTGGTTTTATCTTTTGCTTTTTCACA
TTGTTGGTTTTCgtgagatttagaaaaacaccTGTCGTGCGTGGATCGAA
TTTTCCCATTACAGTCATGCATATTATTTGCATGATATGTTTATTCACCA
CAATGCTTCTACCATTTATGGTGTCAAAAACATCCACCAGTACATGTCTG
GTGGAGCTACTTATAATTTCCCTGCTGGTCTTTTGCCCACATACGTTAAT
CTTAATCAAATGTCAAAACTTACTGCTGGCGTTCCATTCTAAAGTACGTC
TTTCGAAACGAACAAAACGAAGAATGTTGGGAAGTCAGATTTCATTGGTC
ACTCTCTTGATTTTCATAGACATGGGTTTTCTACTGTTAAGTTTACACTC
AAAACCCATCAAGTTAACAGTGGATACTGACAACTCAAAGTACATGAGGA
GCTACAGATGTGATACACAAGTACATACGACTATTCAAATCGGCTTCATT
ATCATTCTCTATCTTATGACAACCATCCAAGCATATCGTGGTCGGGATCT
CCCAGGACCTTTCAATGAAGCAATGCCCATAGTTTATTCATCGTTTACAT
GCATAGTCACATACATCACTTATTTTCCCTTTGTTTATCTTCAAAAGGAC
AAGGACATCAAAATCGTAGCCCGAGTGTTGATTTTGATCGTCTCAAACTT
ACTGTTTGTGATGATATTCTATAGCAGTAAACTTTACATTATCTTATTTG
TACCAAAGAAAAACACTGCCAATTATCTTCAGCaagaaatgttgaaaatt
tcgaaagacCGAGTTGATGCGAAGCTTAAATCCCATTTTGCTAGTACTGA
AGCTTATAATCATTACCAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052422-exon-scaffold_213-1491911889:721743..722864 | TCONS_00052422-exon-scaffold_213-1491911889:721743..722864 | Clytia hemisphaerica | exon |
| TCONS_00052422-exon-scaffold_213-1510915933:721743..722864 | TCONS_00052422-exon-scaffold_213-1510915933:721743..722864 | Clytia hemisphaerica | exon |
| TCONS_00052422-exon-scaffold_213-1575043694:721743..722864 | TCONS_00052422-exon-scaffold_213-1575043694:721743..722864 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:721743..722864 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00052422 vs. Swiss-Prot (Human)
Match: GRM1 (Metabotropic glutamate receptor 1 OS=Homo sapiens GN=GRM1 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 1.222e-19 Identity = 77/328 (23.48%), Postives = 154/328 (46.95%), Query Frame = -1
Query: 109 WYCQKCKQN-YFQPKNNSTLHNTCTPCPKFTLSTRNRDSCYDPYSDKFIQFYNQNGLKLAMGLSIIGFIFCFFTLLVFVRFRKTPVVRGSNFPITVMHIICMICLFTTMLLPF-MVSKTSTSTCLVELLIISLLVFCPHTLILIKCQNL--LLAFHSKVRLSKRTKRRM------------LGSQISLVTLLIFIDMGFLLLSLHS-KPIKLTVDTDNSKYMRSYRCDTQVHTTIQIGFIIILYLMTTIQAYRGRDLPGPFNEAMPIVYSSFTCIVTYITYFPFVYLQKDKDIKIVARVLILIVSNLLFVMIFYSSKLYIILFVPKKN 1041
W C CK+N Y Q + TC C + C +P +++++ N + +A+ S +G + F L+FV +R TPVV+ S+ + I + +F + PF +++K +T++C ++ L++ L ++ ++ K + +LA SK ++ R R M + Q++LV LI ++ +LS S K + L +T N + +G+ +L + T A++ R++P FNEA I ++ +T + ++ + P + + KI+ + +S + + ++ K+YII+ P++N
Sbjct: 545 WICTACKENEYVQDEF------TCKACDLGWWPNADLTGC-EPIPVRYLEWSNIESI-IAIAFSCLGILVTLFVTLIFVLYRDTPVVKSSSRELCY---IILAGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILA-GSKKKICTRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKEVYLICNTSN------------LGVVAPLGYNGLLIMSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYF---GSNYKIITTCFAVSLSVTVALGCMFTPKMYIIIAKPERN 845
The following BLAST results are available for this feature:
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