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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052442 ID=TCONS_00052442|Name=TCONS_00052442|organism=Clytia hemisphaerica|type=transcript|length=887bp
attgaaaatcaaacgAAAATGAAGCAACCAATTAAAAATGCAATCATCAT
CATACAAGTAGGAAAGGAGAAACATTAGTCTACGCTCATAATTGTGGAAG
GCCTTCCAATATACACGCATTCGAAGTTTCGGACGAGAATGGAATCACAG
ATGTCGATACGTGTATCCCAATAAGCACCGGTCCTTCAGTTGCCAAAACT
GTCAAAGAATTCAATCAAAGAGCAATGCAGTATTACAAAGACCATATCAA
CGTCAAAACCTTCCCACCCTCGTATTACGTACGAAATGTAAACATTAAAG
AAGTTGTTGCGAGTCTTGAAAACCATTCATCACTTCTTGGAGGAAAAATT
CTCGTCGGATATAACCCCATAAGCCATCTCAGAATACTTGGACTCAATGA
TCAAAAGATCAAAAGAAGTGTTCTGTGTTTTTCTGAAAACCCTGATCATT
ACGACAACACAATTGTTTGTATTTGTCCCAATCATAGCTTACTGTTTGTT
TATGTGGTCGGTGAAAACGAAAAGCATCTTGACAAGGATTTGGCAAAAGT
TAATGCTGTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTCTCCTAA
ATGAACAGTTTACCATTGTTGGAATTCTCGTCTTACCGGCTTCAAGTGAC
TTGAAAAACATGAAGCAACATCCTTGCTTGAATCTAAACGCAAAGAGTCA
GGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAATGGTTGACCAGCT
TCTTAAAATTAATCCGAGATAATCGAAAGCTTTCATCACCTTCAACGCCA
GGAATAATGGAAATCATTGCAGGGAACATGATGGCAAGCATGGCACAAAC
CAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACT Run BLAST on NCBI transcript from alignment at scaffold_214:33262..34429+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052442 ID=TCONS_00052442|Name=TCONS_00052442|organism=Clytia hemisphaerica|type=transcript|length=1168bp|location=Sequence derived from alignment at scaffold_214:33262..34429+ (Clytia hemisphaerica)
attgaaaatcaaacgAAAATGAAGCAACCAATTAAAAATGTAACATCAAC
TAAAATAAACCAAAATGCTTGGATACAGTGTGAAGTGGATATGAAAACAG
GATATAAATATGAATTCGTTTTCAATACAGACAAAGCTGAGGACTCAAAA
ATCATTGTCCAACTTCCATGTAAGATTGTCTAGAAAATTTGACTAGGAAA
ATAGGGAAAATGCTTTTGAAGATTTGAGGTCACACTTCTGGATTTGTCAt
gctataaattttgaaatttttaagggATCTGAACTTATTAGGAATtcaaa
aaagtcttatttcttTCCAGGCAATCATCATCATACAAGTAGGAAAGGAG
AAACATTAGTCTACGCTCATAATTGTGGAAGGCCTTCCAATATACACGCA
TTCGAAGTTTCGGACGAGAATGGAATCACAGATGTCGATACGTGTATCCC
AATAAGCACCGGTCCTTCAGTTGCCAAAACTGTCAAAGAATTCAATCAAA
GAGCAATGCAGTATTACAAAGACCATATCAACGTCAAAACCTTCCCACCC
TCGTATTACGTACGAAATGTAAACATTAAAGAAGTTGTTGCGAGTCTTGA
AAACCATTCATCACTTCTTGGAGGAAAAATTCTCGTCGGATATAACCCCA
TAAGCCATCTCAGAATACTTGGACTCAATGATCAAAAGATCAAAAGAAGT
GTTCTGTGTTTTTCTGAAAACCCTGATCATTACGACAACACAATTGTTTG
TATTTGTCCCAATCATAGCTTACTGTTTGTTTATGTGGTCGGTGAAAACG
AAAAGCATCTTGACAAGGATTTGGCAAAAGTTAATGCTGTCTTGAAAACA
TGGTGTTATGTTCACAGGCAGATTCTCCTAAATGAACAGTTTACCATTGT
TGGAATTCTCGTCTTACCGGCTTCAAGTGACTTGAAAAACATGAAGCAAC
ATCCTTGCTTGAATCTAAACGCAAAGAGTCAGGACTTTGTCATTTCTTTC
GATGAAAACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGAGA
TAATCGAAAGCTTTCATCACCTTCAACGCCAGGAATAATGGAAATCATTG
CAGGGAACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTCGT
GTTTCAGGAAATGACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052442-exon-scaffold_214-1491911889:33262..33300 | TCONS_00052442-exon-scaffold_214-1491911889:33262..33300 | Clytia hemisphaerica | exon |
| TCONS_00052442-exon-scaffold_214-1510915933:33262..33300 | TCONS_00052442-exon-scaffold_214-1510915933:33262..33300 | Clytia hemisphaerica | exon |
| TCONS_00052442-exon-scaffold_214-1575043694:33262..33300 | TCONS_00052442-exon-scaffold_214-1575043694:33262..33300 | Clytia hemisphaerica | exon |
| TCONS_00052442-exon-scaffold_214-1491911889:33582..34429 | TCONS_00052442-exon-scaffold_214-1491911889:33582..34429 | Clytia hemisphaerica | exon |
| TCONS_00052442-exon-scaffold_214-1510915933:33582..34429 | TCONS_00052442-exon-scaffold_214-1510915933:33582..34429 | Clytia hemisphaerica | exon |
| TCONS_00052442-exon-scaffold_214-1575043694:33582..34429 | TCONS_00052442-exon-scaffold_214-1575043694:33582..34429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_214 | supercontig | scaffold_214:33262..34429 + |
Blast
The following BLAST results are available for this feature:
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