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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052479 ID=TCONS_00052479|Name=TCONS_00052479|organism=Clytia hemisphaerica|type=transcript|length=1164bp
CAGTCGCTTCGCTCTTAAAATAGAAATGTCACGTCACATGAACAGGATAA
AAAGAGTCGTACCTTCGTTAGGAGAATCAGTTCACTACAAACACTCATAG
AGttaacatcaaaactaagaGAAGGAGATTTAAGAAAGTTTTACTGACAA
CAAACAGAAGATATATATTGACAACAACGATAACATTTTTTATAACACAT
ACCATGATCAAAGTTATTACCtcgaaaattttggaagaaGTTTTACCGAA
GACTTTTAAAGCAACCAAAAAGATGCCGAAAGACTTGATGAAACCAATCA
AATCGAACGTATTTTTACGGCGATCATCATCAGATATTACACCAACATCT
TGTTTACAAGAATCAAAGACTGGGTCGGGATGCACATGCGCAGTTAACCA
ATCACAAAAACGATGTACGATCCAGTATGATGACAAAGATAGAGAATACA
TCATGAATTTAATGTTTTTCGCTATCCAATATGAAAATACAGaactttta
ttacaaatttgTCAACAATCACAAATGAACTTGAATGTCTTCAATGTTGA
CGGTGTAGGAGCTTTACATTTTGCAGCAATTGTTGGATCAACTCAATGTA
TTGATATCTTAAAGCAACATGGTGCTTGCCTGAACTTTAAAGACATCCGC
GGTCAAACGCCGATGCATTACTACAGAGCTGAAACACATTCGTCAACACC
TATTTCTAGCCAATGCTAGTATGACCACAGACTTAAAAACCATAGACACC
GTGGTTGAACTACCGCGCTAGATATTTTAATATAAATAAACTCTTTATAA
CTTTTCTTGCAGTATCTTCACAAATAACTTTAATTTCTATTAGCTTTATT
TCTTGTACATATTTTAGtaaaagcatttttattgcttgattttttgtata
gcTCCTTGTTTATTTGAGAGAatagttatttattttattggaTACTGAGA
AAGTTTTATGACGGCCTGGATATAGGAAGAATGTATTGTGTaaaaattgt
tgtttattgTACATAAATTTTATTGAAGAAGATTGGAAgaaattattatt
gttattatataaaagaaacaaattttaacattataaataattatattgaa
gttaaaaaaaaaagatacggaaaaacttgaaaaaataatacaaaattaac
aatgaaaattaaat Run BLAST on NCBI protein sequence of TCONS_00052479-protein >TCONS_00052479-protein ID=TCONS_00052479-protein|Name=TCONS_00052479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MIKVITSKILEEVLPKTFKATKKMPKDLMKPIKSNVFLRRSSSDITPTSC
LQESKTGSGCTCAVNQSQKRCTIQYDDKDREYIMNLMFFAIQYENTELLL
QICQQSQMNLNVFNVDGVGALHFAAIVGSTQCIDILKQHGACLNFKDIRG
QTPMHYYRAETHSSTPISSQC Run BLAST on NCBI transcript from alignment at scaffold_214:286036..287199 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052479 ID=TCONS_00052479|Name=TCONS_00052479|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at scaffold_214:286036..287199 (Clytia hemisphaerica)
atttaattttcattgttaattttgtattattttttcaagtttttccgtat
cttttttttttaacttcaatataattatttataatgttaaaatttgtttc
ttttatataataacaataataatttcTTCCAATCTTCTTCAATAAAATTT
ATGTAcaataaacaacaatttttACACAATACATTCTTCCTATATCCAGG
CCGTCATAAAACTTTCTCAGTAtccaataaaataaataactatTCTCTCA
AATAAACAAGGAgctatacaaaaaatcaagcaataaaaatgcttttaCTA
AAATATGTACAAGAAATAAAGCTAATAGAAATTAAAGTTATTTGTGAAGA
TACTGCAAGAAAAGTTATAAAGAGTTTATTTATATTAAAATATCTAGCGC
GGTAGTTCAACCACGGTGTCTATGGTTTTTAAGTCTGTGGTCATACTAGC
ATTGGCTAGAAATAGGTGTTGACGAATGTGTTTCAGCTCTGTAGTAATGC
ATCGGCGTTTGACCGCGGATGTCTTTAAAGTTCAGGCAAGCACCATGTTG
CTTTAAGATATCAATACATTGAGTTGATCCAACAATTGCTGCAAAATGTA
AAGCTCCTACACCGTCAACATTGAAGACATTCAAGTTCATTTGTGATTGT
TGAcaaatttgtaataaaagttCTGTATTTTCATATTGGATAGCGAAAAA
CATTAAATTCATGATGTATTCTCTATCTTTGTCATCATACTGGATCGTAC
ATCGTTTTTGTGATTGGTTAACTGCGCATGTGCATCCCGACCCAGTCTTT
GATTCTTGTAAACAAGATGTTGGTGTAATATCTGATGATGATCGCCGTAA
AAATACGTTCGATTTGATTGGTTTCATCAAGTCTTTCGGCATCTTTTTGG
TTGCTTTAAAAGTCTTCGGTAAAACttcttccaaaattttcgaGGTAATA
ACTTTGATCATGGTATGTGTTATAAAAAATGTTATCGTTGTTGTCAATAT
ATATCTTCTGTTTGTTGTCAGTAAAACTTTCTTAAATCTCCTTCtcttag
ttttgatgttaaCTCTATGAGTGTTTGTAGTGAACTGATTCTCCTAACGA
AGGTACGACTCTTTTTATCCTGTTCATGTGACGTGACATTTCTATTTTAA
GAGCGAAGCGACTG Coding sequence (CDS) from alignment at scaffold_214:286036..287199 >TCONS_00052479 ID=TCONS_00052479|Name=TCONS_00052479|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_214:286036..287199 (Clytia hemisphaerica)
CTAGCATTGGCTAGAAATAGGTGTTGACGAATGTGTTTCAGCTCTGTAGT
AATGCATCGGCGTTTGACCGCGGATGTCTTTAAAGTTCAGGCAAGCACCA
TGTTGCTTTAAGATATCAATACATTGAGTTGATCCAACAATTGCTGCAAA
ATGTAAAGCTCCTACACCGTCAACATTGAAGACATTCAAGTTCATTTGTG
ATTGTTGAcaaatttgtaataaaagttCTGTATTTTCATATTGGATAGCG
AAAAACATTAAATTCATGATGTATTCTCTATCTTTGTCATCATACTGGAT
CGTACATCGTTTTTGTGATTGGTTAACTGCGCATGTGCATCCCGACCCAG
TCTTTGATTCTTGTAAACAAGATGTTGGTGTAATATCTGATGATGATCGC
CGTAAAAATACGTTCGATTTGATTGGTTTCATCAAGTCTTTCGGCATCTT
TTTGGTTGCTTTAAAAGTCTTCGGTAAAACttcttccaaaattttcgaGG
TAATAACTTTGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052479-exon-scaffold_214-1491911889:286036..287199 | TCONS_00052479-exon-scaffold_214-1491911889:286036..287199 | Clytia hemisphaerica | exon |
| TCONS_00052479-exon-scaffold_214-1510915933:286036..287199 | TCONS_00052479-exon-scaffold_214-1510915933:286036..287199 | Clytia hemisphaerica | exon |
| TCONS_00052479-exon-scaffold_214-1575043694:286036..287199 | TCONS_00052479-exon-scaffold_214-1575043694:286036..287199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_214 | supercontig | scaffold_214:286036..287199 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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