TCONS_00052499 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052499
Unique Name	TCONS_00052499
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	859

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_216:4537..7556+

transcript sequence

>TCONS_00052499 ID=TCONS_00052499|Name=TCONS_00052499|organism=Clytia hemisphaerica|type=transcript|length=859bp
AAATCCCTGTCTTGGTCAGCCAAAAGAGTACAGAAATGTCCAAAGATGAA
CGTCCAACATTGGAGTTCGATTCACAAAGTACAAATTTCTGCACAGCTGA
CGGTAATGGAATGGAATATTTCTTTGCTTCAGATGCTAGTGCCATCATTG
AACACACAAAGCGAGTTATCTTCTTGGAAGATGGAGATGTTGCACTTGTT
CGTGATGGAAATTTGCAAATTGCTGGCATGAACGATTCAACGCCTTTGAC
AAGAGATGTACAACATCTTCAACTGGAAATTCAACAAATTATGAAAGgcA
ACTACAGCACCTTCATGCAAAAGGAGATCATGGAACAACCAGAATCAATC
TACAATACCATGAGAGGACGTGTCAACTTTGAAGAAAACAGAGTTATCCT
TGGTGGTTTGGTGTCACACATGGATTACATTAAACGTTGTAGAAGATTGA
TCTTCATTGCTTGTGGAACTTCTTACCACAGTGCAGTCGCAACACGACAA
TTATTAGAGGAATTGACAGAGCTACCGGTAATGGTCGAACTTGCCAGCGA
CTTCTTGGACAGGCAAACACCTATTTTCAGAGATGACGTTTGCTTCTTCA
TCAGTCAGTCTGGCGAGACAGCTGATACATTGATGGCATTACGTTATTGC
AAATCACGTGGTGCTTTATTAGTGGGAATCACCAACACTGTTGGCAGTAG
TATCTCCCGTGAAACTATGTGTGGTGTACATATCAATGCTGGTCCTGAAA
TTGGTGTTGCCAGTACAAAAGCATACACCAGTCAGTTCTTATCGTTGGTC
ATGTTTGGTGTTATGATGGCTGAAGATCGAATCTCTAAACAAGATCGTGT
TAACGAGAT

Run BLAST on NCBI

transcript from alignment at scaffold_216:4537..7556+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052499 ID=TCONS_00052499|Name=TCONS_00052499|organism=Clytia hemisphaerica|type=transcript|length=3020bp|location=Sequence derived from alignment at scaffold_216:4537..7556+ (Clytia hemisphaerica)
AAATCCCTGTCTTGGTCAGCCAAAAGAGTACAGGTAGGTGTACCTTaagg
aattgattttggtaaaCAGTAAATGATATTTACTGTATGTATGGAATTAT
TTTATCaaccttttttttaattactGCTGCTTTATTTCCTTACAATGACC
TGTTAGAGAATTTTCGTAATAATTTTCtatcaaaattctttttattaGAA
ATGTCCAAAGATGAACGTCCAACATTGGAGTTCGATTCACAAAGTACAAA
TTTCTGCACAGCTGACGGTAATGGAATGGAATATTTCTTTGCTTCAGATG
CTAGGTAAGAAAATATCTTTATCCATAGAGCAGTACTTGgtcataaaaaa
aagatttttcattttcaaaaagattttttcaaaattgacatTGTTNTTAT
CCATAGAGCAGTACTTGgtcataaaaaaaagatttttcattttcaaaaag
attttttcaaaattgacatTGTAGTTTGGTATATTTGTATTCTAAGTTCC
ATTCAAGGACaaaaacatgtacaaactcaaACCAAaccttttatttttct
taaatcgttaaaaaaagaaaaattgaataaaacataaaatttgaaagatg
GAAAATATAATAAGCACAATTTAAGAGAGTGTGACAATAAGAATACAAAT
ATTTCTTGACACTTTACACAATaattcaatttcttttccaGTGCCATCAT
TGAACACACAAAGCGAGTTATCTTCTTGGAAGATGGAGATGTTGCACTTG
TTCGTGATGGAAGTAAGTAGAATCCAAACTGATAGACATCACCTTTTTTG
GCATTCATTAATTAAAGATTTCTAGACGTTAAAAAACATTAGATGGATTT
TGTTTGGTctaaaactaaattaaattttcaatccTCGCAGCATGTAGTTT
TGCAAGATGCAAATTTATCTAACTTTAATGGATTTACTAAAGCCATAGCC
GATAAATATCTTTTAGGGTTAGAAAAGTATATGATAAGGCGtggtaattt
taattttaaatattCATCTTTTTTACAGATTTGCAAATTGCTGGCATGAA
CGATTCAACGCCTTTGACAAGAGATGTACAACATCTTCAACTGGAAATTC
AACAAATTATGAAAGGTTGCTATTATTGGTTTCTTATTACTCAACTGCAA
GCTTTTCATATCCGAAAAAGTAACTTCTAGGGCATAGTTCACTACAAAAA
TAACACAAATAGCTTAAATATTAAACGTAAATGTAAACCATAATTTGCAA
GAGTTCCATCAAATGTTTCCGGATTAAATGAATCCAATCTAGTGTTGATG
ATATGAATGAAATAAAGGCTGCTAAGAGCGTTTGGGTACTTTGGAACAAT
CTCCTTTTTTAAAGCTCGATCGTAAGTATGTTTgcccaatctcaaaatta
gccATGGCGTAAGTCATATCAAAGATTCTTGACAAATAACcaacaatttt
attgttttacttttttaggcAACTACAGCACCTTCATGCAAAAGGAGATC
ATGGAACAACCAGAATCAATCTACAATACCATGAGAGGACGTGTCAACTT
TGAAGAAAACAGAGTTATCCTTGGTGGTTTGGTGTCACACATGGATTACA
TTAAACGTTGTAGAAGATTGATCTTCATTGCTTGTGGAACTTCTTACCAC
AGTGCAGTCGCAGTAAGTTGATCGAGCCTTTACAAGTTAAGACACATAGG
ATAACCATGTAGTATAGTCTTTCTCGTTCTGATAGCCTGATTTTAATGGT
TATGATgacaaattgttttcaaaatagctggagatatatattttttattt
tttttagcaaaagtATCTGTTTCCTGACACTTAGTACCTAAATTTCACTA
TTTTTACATGGTATCTTTTACATCATAAAAAATGGAGCAAATTATGTGCT
TCATTTACCAAATTTGTGATTTAAATATTCAattaacaaatttttaaaaa
atctccaACCTGTAACCCTTTTTCTTCCTAGACACGACAATTATTAGAGG
AATTGACAGAGCTACCGGTAATGGTCGAACTTGCCAGCGACTTCTTGGAC
AGGCAAACACCTATTTTCAGAGATGACGTTTGCTTCTTCATCAGTCAGTC
TGGTAAGTGTAACAATAAGGATTGAGTCTACTCAGATATCATCTTTATAG
CCCGAAAAATTAATCAGCTGTTTCGGCTCAAAAATGAGGcaaattcaaag
attttctGCGATTCGCCTGATTTAAGTTTGAGATAATTGTATAAGTCaac
atttcattgttttttgtcatgaatttttGGAAAACTGGTAGAAAATATTG
TTTCTTTTACTCACAAACTTTACGATAATTGCTCTATTTTTGTCTCCTAT
CTTCTCATTCAATATAAAAGTGACGGGACTTTTATTCTTCTTTCCCCCAG
GCGAGACAGCTGATACATTGATGGCATTACGTTATTGCAAATCACGTGGT
GCTTTATTAGTGGGAATCACCAACACTGTTGGCAGTAGTATCTCCCGTGA
AACTATGTGTGGTGTACATATCAATGCTGGTCCTGAAATTGGTGAGTTTA
TTTGCGTTAATAGTCGAGTAGCTCAATCGGTCGAGCTCTTGTTTGTGATC
CGAAGGGTGTTGAGTCAATCCCTGGTCACCACCAACTCAATTTAGATTGG
GTTAATATGGTCCAGTGAAGAAGTAGGAGTTAAATATTAGTCCCAATTTC
ACAAGGTATTGTACTTGGTATCTGGCCTTTATGGCTCTTGAAAGTTAACC
CTAATTTTATGTCATTGACTCATCACCACTAGTGCGTGGGACCAGTATTC
AGCAAACTGACTGAGTAAAAATCGTCATCTATGGAAGTAAAACCTAGTGC
GATTCTACATTTTGATGTACAACCTCGTCATTGTAATGTCTTTTAATCTC
TTATCCCATCACAGGTGTTGCCAGTACAAAAGCATACACCAGTCAGTTCT
TATCGTTGGTCATGTTTGGTGTTATGATGGCTGAAGATCGAATCTCTAAA
CAAGATCGTGTTAACGAGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033196	XLOC_033196	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_216	supercontig	scaffold_216:4537..7556 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.9806	27.8773	73.3062	67.5533	37.2696	33.2202	43.532	48.1792	71.9167	87.9496	24.576	54.5729	16.3393	16.3334	37.053	34.0452	29.8042	27.4519	6.72755	17.1122	6.18075	6.05603	12.4016	15.8398	60.6996	50.9584	8.79092	6.26894	9.23099	12.1947

Blast

[Close]

BLAST of TCONS_00052499 vs. Swiss-Prot (Human)
Match: GFPT2 (Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3)

HSP 1 Score: 404.06 bits (1037), Expect = 5.298e-136
Identity = 203/289 (70.24%), Postives = 230/289 (79.58%), Query Frame = 3

Query:    3 IPVLVSQKSTEMSKDERPTL--EFDSQSTNFCTADGNGMEYFFASDASAIIEHTKRVIFLEDGDVALVRDGNLQIAGMNDSTP--LTRDVQHLQLEIQQIMKGNYSTFMQKEIMEQPESIYNTMRGRVNFEENRVILGGLVSHMDYIKRCRRLIFIACGTSYHSAVATRQLLEELTELPVMVELASDFLDRQTPIFRDDVCFFISQSGETADTLMALRYCKSRGALLVGITNTVGSSISRETMCGVHINAGPEIGVASTKAYTSQFLSLVMFGVMMAEDRISKQDRVNE 857
            IP+L    + E  K+   T     DS +      D   +E+FFASDASAIIEHT RVIFLED D+A V DG L I  +  S     +R +Q LQ+E+QQIMKGN+S FMQKEI EQPES++NTMRGRVNFE N V+LGGL  H+  I+RCRRLI I CGTSYH+AVATRQ+LEELTELPVMVELASDFLDR TP+FRDDVCFFISQSGETADTL+ALRYCK RGAL VG+TNTVGSSISRET CGVHINAGPEIGVASTKAYTSQF+SLVMFG+MM+EDRIS Q+R  E
Sbjct:  219 IPILYRTCTLENVKNICKTRMKRLDSSACLHAVGD-KAVEFFFASDASAIIEHTNRVIFLEDDDIAAVADGKLSIHRVKRSASDDPSRAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRVNFETNTVLLGGLKDHLKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFISLVMFGLMMSEDRISLQNRRQE 506

The following BLAST results are available for this feature:

BLAST of TCONS_00052499 vs. Swiss-Prot (Human)

BLAST of TCONS_00052499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GFPT2	5.298e-136	70.24	Glutamine--fructose-6-phosphate aminotransferase [...	[more]

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TCONS_00052499 (transcript) - C. hemisphaerica