Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052500 ID=TCONS_00052500|Name=TCONS_00052500|organism=Clytia hemisphaerica|type=transcript|length=2341bpRun BLAST on NCBI protein sequence of TCONS_00052500-protein >TCONS_00052500-protein ID=TCONS_00052500-protein|Name=TCONS_00052500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp THKHNTNIHNKFLHTYNNTTTTKMDCVDLETRLKEFDQEHLMRFYNTLDDRun BLAST on NCBI transcript from alignment at scaffold_216:30748..36158+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052500 ID=TCONS_00052500|Name=TCONS_00052500|organism=Clytia hemisphaerica|type=transcript|length=5411bp|location=Sequence derived from alignment at scaffold_216:30748..36158+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_216:30748..36158+ >TCONS_00052500 ID=TCONS_00052500|Name=TCONS_00052500|organism=Clytia hemisphaerica|type=CDS|length=10536bp|location=Sequence derived from alignment at scaffold_216:30748..36158+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052500 vs. Swiss-Prot (Human)
Match: UAP1 (UDP-N-acetylhexosamine pyrophosphorylase OS=Homo sapiens GN=UAP1 PE=1 SV=3) HSP 1 Score: 437.187 bits (1123), Expect = 8.271e-144 Identity = 207/410 (50.49%), Postives = 290/410 (70.73%), Query Frame = 3 Query: 72 MDCVDLETRLKEFDQEHLMRFYNTLDDDQQIKLTNELKGVDYKLITKLYGRAKVDLEKTDVKK--DDLMELISPELRVEKSTSPKEIVQEWENRGLQEMGDNTVGVILLAGGQGTRLGFNHPKGMYNVGLPSNKTLYQLQAERIFKLQKLAEAKTGNKSVIRWYIMTSESTLKDTKDYFESNSFFGLEPSAVVFFEQHQLPCLTFEGKLILKTPGSLAKAPDGNGGLYTALRSAKVVDDMEQNGVKHVFVYCVDNILVKIADPSFIGYCAMKDLDASNKVIEKKEPNESVGVVCKCEGKFQVVEYSEISQTTAEKRSEDGRLLFNDSNICMHYFNTRFLRQIITEHLEEMPHHIAKKKIPYVDDKGVEIKPTKPNGMKLEKFVFDVFQYTSNFGIFVCERDEEFSPLKNG 1295 M+ DL+ L + QEHL+RF+N L++ QQ++L EL+ ++++ + + +A ++ +K D ME + E+ + +T ++ +Q WE+ GL ++ N V V+LLAGGQGTRLG +PKGMY+VGLPS KTL+Q+QAERI KLQ++AE GNK +I WYIMTS T++ TK++F + +FGL+ V+FF+Q LP ++F+GK+IL+ ++ APDGNGGLY AL + +V+DMEQ G+ + VYCVDNILVK+ADP FIG+C K D KV+EK P E VGVVC+ +G +QVVEYSEIS TA+KRS DGRLLFN NI H+F FLR ++ + ++ HH+A+KKIPYVD +G IKP KPNG+K+EKFVFD+FQ+ F ++ R++EFSPLKN Sbjct: 1 MNINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREV-LGSATRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNA 409 The following BLAST results are available for this feature:
BLAST of TCONS_00052500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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