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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052509 ID=TCONS_00052509|Name=TCONS_00052509|organism=Clytia hemisphaerica|type=transcript|length=3118bpRun BLAST on NCBI protein sequence of TCONS_00052509-protein >TCONS_00052509-protein ID=TCONS_00052509-protein|Name=TCONS_00052509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp MLNSKVITLMVFPTCVTYGMSIKDSHRPDEFSPSTTSDGAAGHWEPFWLGRun BLAST on NCBI transcript from alignment at scaffold_217:42790..53904+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052509 ID=TCONS_00052509|Name=TCONS_00052509|organism=Clytia hemisphaerica|type=transcript|length=11115bp|location=Sequence derived from alignment at scaffold_217:42790..53904+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_217:42790..53904+ >TCONS_00052509 ID=TCONS_00052509|Name=TCONS_00052509|organism=Clytia hemisphaerica|type=CDS|length=12276bp|location=Sequence derived from alignment at scaffold_217:42790..53904+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052509 vs. Swiss-Prot (Human)
Match: OXDD (D-aspartate oxidase OS=Homo sapiens GN=DDO PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.515e-59 Identity = 125/343 (36.44%), Postives = 181/343 (52.77%), Query Frame = 2
Query: 617 VVMLNSKVITLMVFPTCVTYGMSIKDSHRPDEFSPSTTSDGAAGHWEPFWLGDTPVDVIKSYAKETFAYVMENIKNNPDSPDIGFFTCHGF-LLSKDETFKKPFWYDIPSDSRVLSKDDLKMFPSEARSGMSFTTVYTEGRRLVPYYIKRFQEMGGKVFQKLISSLDELPGDFDVVINCTGLGSRKLFNDKSMFPVRGQVLKIKAPWIKQFVTYDVENQDPMYILPNQEFVVVGGTTQKGDYNAKISLTDRKEILDKATKFIPSLKNAKVVGEWVGLRPAREKGPRIEIENFTLSNNRNLKVIHNYGHGGCGMTIHWGCANHVAKLFDQVCSQQNTRLQTSKL 1642
VV L++ V + P C +S D+F+P TTSD AAG P DTP+ K + +ETF ++ I N+ ++ D G G+ + T + PFW D+ R +++ +LK FP G +FTT+ E +P+ KR + GG + I L EL FD+V+NC+GLGSR+L D +FPVRGQVL+++APW++ F+ + YI P V +GGT QKGD+N + +EIL + PSL A + E VGLRP R G R++ E R L V+H+YGHG G+++HWG A A+L + T + S L
Sbjct: 13 VVGLSTAVCISKLVPRCSVTIIS-------DKFTPDTTSDVAAGMLIPHTYPDTPIHTQKQWFRETFNHLFA-IANSAEAGDAGVHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYV-FGQAFTTLKCECPAYLPWLEKRIKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPWVEHFIR---DGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEPSLHGACNIREKVGLRPYR-PGVRLQTELLARDGQR-LPVVHHYGHGSGGISVHWGTALEAARLVSECVHALRTPIPKSNL 341 The following BLAST results are available for this feature:
BLAST of TCONS_00052509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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