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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052528 ID=TCONS_00052528|Name=TCONS_00052528|organism=Clytia hemisphaerica|type=transcript|length=2204bp
TTAATCACATCTACAGGAGTATCACCCAACCAAAACGGCTCCCAATGTCC
GGCTGCCCCATCANATTTACAGGAGTATTACCCAGCCAAAACGGCTCCCA
ATGTCCGGCTGCTCCATCGCTCGTGGTTGAAGGTGAAAATTCATCTGATA
TcaaagtgacgtcacaaaagGAAAATTGTTGAATAATTTTATAGGCTGTT
GATGAGCCAATAATCCCTGCTCCAAGAACTGCTACTTTCATTTCAAGGAT
GATAGCCTTTCGATTATATAACAGTGTAATAAATAGCCACGGTATCGGAG
TAGTACCAGACCGGATGAACAACCGAGGCCTGATTtcaaataattatgac
gttatCAAGCAGGTTTTCcttcaatttctcaaaaaagacaAACAATTCTA
CATTTACTGTTTCTTTAGACGTATAAATTACCATGGGACCCCgtcccact
gaaaaaattggcgAAAAcattgtccccggtggaaaatttaacctacaatt
tttgtccccaccgaaaagaatcaaataaaccaatcctcactgtaaaatat
tatgctttttttccatccccactgaattttttgacttgaaaacaaaataa
ttgaaatccccagtcataaaaaatatgggaacaTCAATCCCCAATCCTCT
GTTATTTATACCCACTTGctaaaaaatcctaccgggtctatgAGAGTCCT
TTATAGACATGCCATAAGTTACACAAGTTGGAAATACCATTAATGTTATC
ACTTTTGAATTTAACATAACAACTCTTTTCTATTATATACTGACATAGTG
AGAAAGTCAGATTATATTaccctgataacagctgttcataatttttctta
cgcgcacggtaaacctctgaagttgcttgaaaattatacatctgacgaaa
atcttgttgtgcgccagaaagtcaaaaaactgatacggcaccctattcat
aaacacaatgcacgcaactttgttgtcattcctagtccttttagacgaac
gcggtccttacgattttgagattgcatattcgtcagattgttatgttttc
acacattcctttagagcttcagcgtggtatgcacaatctgatctcaggtt
acatcCACAGGACACTTGAACTCGGAAAGAACTTTGGAAGAGACTTTTTA
GTACAAAATGAAAGACGAAGCAGCCACAAATAACAAATGTCAAGCTTGGA
CGAAACTTATTTTCAACCTGATCATTTTTATTCTTCTCATCATTTCAATG
ACAACAAAACCATGGGGTGTTTTAAAGATCGAATCAAGTGATAAAGAAAT
CGGTAATTTCGGATTATGGCGAGCATGTAAAATGGGGAAATCGGATACGG
GAAAAGTATGTGACGATATATCAGATGGTAATTTCACAGTATTTGCTTAC
AAGTCCAACCCGTCTGACATCGACGTTAAATTCGGCAACACAATCGAAAA
ATTGTGCATTGAATTCCGAAATGAAACCGTTTTGAAAAATGGTACAAACA
CGACAGAGTTACAACCTTACAATAAATGTATTACTGAAAGATTCTATCAA
AAGGTTGAAGTGGAGAGACTTCGTGTATTCATTATTCTTGCCACCGTCGT
CTCATTTCTTGTAACCTTTGGCCACATCTTTGGTATGTACAAAGGTCAAT
CAAATGATTTTGTACCTGCGGTGGCATCATTGTTGATTCCATTATGGCTC
ATTATCGGGCTTTCCGTATTCCTTGGATTTTACGGTGGTGACCATTTCCA
GCTTGTAATGCTTGAATATGGATGGTCCATGATTTTAGCCTGGATCTGTG
CTGTTTTGAGCTTATTAAACACGTTATATATGATGTACACAGCTTTTACG
TCCGAGATATAAAGGAAGATCAATCTTATTCTTATAATCATTACAGGCTA
TAACTATAGCTTTCGGTATTATTTTCTGTTACATAAATTGCAACTTTATG
TTGGTAAATATTGGTGACAGGAGGTGGAAtgtgaaaaacgttttttagca
tttaaaggacaacaatcaatcaatataaaattgaattttttaacaTATCA
TTTGTAGAAATAGCAAAGCTGTACTTATTCTtagatttcaatgaatgtaa
taccTTTCCTCTACAATAAAAGtcataatattaatatttttttcaaatat
gctttgctaaattttaaaaaccacaTGATTTTAAGTGCTCTAAATTACTT
CTGG Run BLAST on NCBI protein sequence of TCONS_00052528-protein >TCONS_00052528-protein ID=TCONS_00052528-protein|Name=TCONS_00052528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MKDEAATNNKCQAWTKLIFNLIIFILLIISMTTKPWGVLKIESSDKEIGN
FGLWRACKMGKSDTGKVCDDISDGNFTVFAYKSNPSDIDVKFGNTIEKLC
IEFRNETVLKNGTNTTELQPYNKCITERFYQKVEVERLRVFIILATVVSF
LVTFGHIFGMYKGQSNDFVPAVASLLIPLWLIIGLSVFLGFYGGDHFQLV
MLEYGWSMILAWICAVLSLLNTLYMMYTAFTSEI Run BLAST on NCBI transcript from alignment at scaffold_217:37851..44178- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052528 ID=TCONS_00052528|Name=TCONS_00052528|organism=Clytia hemisphaerica|type=transcript|length=6328bp|location=Sequence derived from alignment at scaffold_217:37851..44178- (Clytia hemisphaerica)
TTAATCACATCTACAGGAGTATCACCCAACCAAAACGGCTCCCAATGTCC
GGCTGCCCCATCANATTTACAGGAGTATTACCCAGCCAAAACGGCTCCCA
ATGTCCGGCTGCTCCATCGCTCGTGGTTGAAGGTGAAAATTCATCTGATA
TCAAAGTGACGTCACAAAAGGAAAATTGTTGAATAATTTTATAGGCTGTT
GATGAGCCAATAATCCCTGCTCCAAGAACTGCTACTTTCATTTCAAGGAT
GATAGCCTTTCGATTATATAACAGTGTAATAAATAGCCACGGTATCGGAG
TAGTACCAGACCGGATGAACAACCGAGGCCTGATTTCAAATAATTATGAC
GTTATCAAGCAGGTTTTCCTTCAATTTCTCAAAAAAGACAAACAATTCTA
CATTTACTGTTTCTTTAGACGTATAAATTACCATGGGACCCCGTCCCACT
GAAAAAATTGGCGAAAACATTGTCCCCGGTGGAAAATTTAACCTACAATT
TTTGTCCCCACCGAAAAGAATCAAATAAACCAATCCTCACTGTAAAATAT
TATGCTTTTTTTCCATCCCCACTGAATTTTTTGACTTGAAAACAAAATAA
TTGAAATCCCCAGTCATAAAAAATATGGGAACATCAATCCCCAATCCTCT
GTTATTTATACCCACTTGCTAAAAAATCCTACCGGGTCTATGAGAGTCCT
TTATAGACATGCCATAAGTTACACAAGTTGGAAATACCATTAATGTTATC
ACTTTTGAATTTAACATAACAACTCTTTTCTATTATATACTGACATAGTG
AGAAAGTCAGATTATATTACCCTGATAACAGCTGTTCATAATTTTTCTTA
CGCGCACGGTAAACCTCTGAAGTTGCTTGAAAATTATACATCTGACGAAA
ATCTTGTTGTGCGCCAGAAAGTCAAAAAACTGATACGGCACCCTATTCAT
AAACACAATGCACGCAACTTTGTTGTCATTCCTAGTCCTTTTAGACGAAC
GCGGTCCTTACGATTTTGAGATTGCATATTCGTCAGATTGTTATGTTTTC
ACACATTCCTTTAGAGCTTCAGCGTGGTATGCACAATCTGATCTCAGGTT
ACATCCACAGGACACTTGAACTCGGAAAGAACTTTGGAAGAGGTGAGGAA
AAAAGGGAGAGCAATCTTTGTTATTGATAAAGTTTGTTATTATTAAAGCT
TACAAAATCTCTCTAAGATTCTCAAGTCACTGTAGTTGCAAAACGCATCC
AGGTAGCCGATGTAAACGATATCTCTATTCGAATACGAGCACCGTGAATT
ACACACCCCTGTCACCCCAACATCTCTGTCTCACAGTCATGTTGACACCT
TTTGCCAAAGCGGGGATAAAAATTTCTATTGAGATCTCAATGGGGATAAA
AATTATAATATTCCAAGGTTGAAAAATCCAGTGGGAATGGTTTTGGAGTC
CAATTTTTTAACACTCAATTTCGAATGGGGATGAAATCAAAGTCAATCTC
TCAGTGGGGCTGAGATTCTAGGGTATTTTTCCAACCGGGACGAAATTTTG
CCAAACTCTTCAGTGGGGCGGGTGTCCCAGCAGGTCTTTGACACAGGGGT
GTTATTATCAACGAAGATGGATACATAAGTTAAGTCTTGGCTGGAATAGA
TACGATGAACACCGTAGCTAAGCTTTCTCTAAAATTAAGCTGTGGAGACA
ATCACATCAATATCCTAAGAATAGAAGATGAGAGAGCACATATCCCCATT
TTAAGCTCAAGTAGATTTATAATTCTATATTTCCAGTCATTTATAACTCT
TCTGAAATGCCGATAGGCGTAGCGAGATACACTGCATAATTTATGGTTGA
GAGCGGTTTTTACGACACTGTAATTATTATCTTTGTTTTATCAAAAGGTA
ATCAATATGTCATAAACATCTGCACTCCCTCATAAATTTTGCAGGGTATC
TCGCTACGTTTATGCCTCTGAAAGATTTTACACTTATCCATCTAAACTTA
CTCTACACAAATCACAAAGATAAAATACATATTATTGCAGCTACACATTG
TCCATTCATGGATAGTATTAGATGATAATATCAAGTCGAAAACCTACAAA
AAGAAAGTAGACCTCCGTTTCAGATATCAAAATAAACAATCTAAAAAGGA
AATATGATTCCATTATTTTCGTTATTTTGATTTTTTTATCGCTCCTCGTC
AGACACGGGCAATTTTCACCACTTAGGAGCAAAGAGAGCTTTTTGAATCC
CTGCTGAATATTTGAGAAACAGCTGAGTCTCTAGGCTGATTGCATTCTCT
AACGAAATTGTGCTTCTTTTCAATACTACCTTGCAGAGGTCTGCGATTCA
GAATACCGAGTCTCCAGAAGTCGAACCTCTATTACTCAAATGTCTCCTTA
ATTCGAACAAGTTTTCTAATCCCTTCAGTTAACAATGCCTTATAAGCCAA
TCTCTATAACTTGATATTTCCTTAACTCGAACAAATTTAAGTTCACCGTG
CGTGTTCAATTTACAGAGACTCCACTTTACTCCTGTACACACAATGGAAT
TTGGAATCCCCATCAATAGATTACATTTTTCATTCCGATATCCCGAGTTA
TCATTCCGTCTATACCATGAACATAGAAGCTGTTATCACTTTGACCTAAC
AACAAAATTTTATGGCTTCGGGAAATGGGCTTTAGATTTGAATTCCATTG
TTTTTCGAACCAGAAAATTCAGTAGGGATCGACAAAATAGCAAAATATTT
TGCAGTGAGGATTTGCTTATCTGATTATTTTCAGTGGGGAAAAAAATTGA
GTAAAATTTTCCATTTGGGGCGATATTTTGGGTCACATGGGTCTGTTTCT
TACAGAGCTGGGGAGGGGATGTGGGTAGCTAAAGCCTCACTTTATTGCAA
AGTAAAAGATCCGTCAGTAACACAAAATCGTGGTAAAAATGGCTCTGGGT
ACAAGATTACGTTTTTTATGGCATCCCTGTCTCGCATCCCCGATGGAACT
TCTTCCAACAGTAAATTGGAATGTTTATATCGAAATCCCGAGGGGATAGA
AAACTTATTGTTCCCAGGTCGACAAGTTTTATGGAGAACAATTTTTTCAT
ATAATTTTAAATGGGGATGAACACAAAGCCAATTTCCCAGTGGGGCTGAA
AGTAGAGTTATTTCTAATTTGGGCCGAAATCTTGGCCAAATTTCCCAGTG
GGGAGGGGGTAACACCGGGTCTGTGACACAGGGGTGTTATTTGGAAATAA
TTTTTACTCCAATACGTTACATGTTGAACGGTGAAAAATAATACAGCTTT
TACAATGACTTTTTATACGTTATAAACATCGCAGAACCAACAAGAAAGAA
AAGAATTTCTCAACCAGGAAAATTGGATATTTGTGGTTGCATTTTATGAC
AATTGATGTTTAATTTCGTCAAAAGTATATAGCTTTCATCAAGTAGGAAG
TTAAATCCAAAAAACTTTCAGTACAATTTCTTTGTAACGTGGCTCTTTCT
TGTACTGTAGTGTTGCTTCTCGACAATCGCAAATTTGATGTTTAAAAAGC
GGTTGTCGTCGCTTTTCCATTTATTTGGCCACTAAAAACTAAACTGCTCC
AAATTTGTTTTGCAGGATAGTCGCTTCATTTCCCATCCAAAATATCTCTT
TTGTGTTTCGGGTTTTAAACTCAATGGTAGGAGCATCAGTAGTATCAGCT
AGCTCACCATTCTCATAACAGATCATCCATTCTGTGCATACCACGCTCTA
CTCTAAAGAGATATGGCGAATGTTGTGATTGACGCTTGTTTTGCTTATTG
GCCAATCACCGCGTTCCAATTTAATATTCATCCCAAATCTGAATGAAAAG
GTTGGGTAGATTCTCTTATGAAGCCATGGCCATTAGAGCTGGATACGTAT
TATGCGCAGAGTAACAGAATCTGCTAGCTAGAGATTACTAGCTAANAGCC
ATGGCCATTAGAGCTGAATACGTGTTATGCGCAGAGTAACAGAATCTGCT
AGCTAGAGATTACTAGCTAATTTGCTAGTGTGTACAGAGCCTATTATTAT
CAACATTTTTTCATCTTGTCTACATAGACCCATATCATGATTAATACCTT
TTTGTGTAAATGAGCTATTAATTTTTGTAGAAAAAATTGCTTTCTGCTGA
AGCAATACAGTTTTTGACAAAGAAATGCTGTTTAAGTGATAATTCGGTTT
TAGAGAAAGAGAGAAGCTTTTTTGATGCTATGGTTGGCATTTTTATTTGA
TTTTGTATTTTTATTTGTGAGCTTACTACTTTAACATGCCTTTCTCTTTT
GACTTAAATTCTCTTGTCAACTTTGTATTAAATATTTACTTCGTGACTCT
AGTTCAAATGGATACAGTAACATTGCTTTGTTTTTTGTTGTCCTTCGATG
ACACATCGCATAATTTAATACGCATGACTTTGCAACTATGCATTGCCATT
AGTTTAGTTTTGTGACGTTCTTTGATTCAAACCCAGAAGATGGAGAATGT
GGTCTTTGTAAGTTCGATGAACAGAGCTACAATAACCAACCCTGGCTTGA
GGGCCTATAAACATCTTAGAAGACCAAGTCATATTGTAAATCGAAAGCCT
CAAAGCAAAAATTATACTTATTCAGTGACTAGGAAATCCCACCAGGTCAG
GAAAACAGGGTTTGTTATAGCATCATCTCGTCCAAAAAAATACACCACTG
CCTCACAGCCCGGTGGAACTTTTTTTCCTCAGTGGGGATACAAATTTCTA
TTGAAACCCCAATAGGGATAGAAATTCTACCGTGAAGTCGGGTAACTTTC
ATCAGTGGAGGCTAACATGCATAGCCCTCAAATGACTGACCAATCAAAGC
AGCAAAATTTCAAAACAAATGAACTACGCAGCTTCGCTCGCAGCTCTACT
CTACCATTTTTGTTTTGATTTAACTTTGTATTTTAGGGACCAGACAGGTC
ATTCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCGA
CTTCACGGTATAGTTTCAAGGTTAAAAGATCCAGCGGGCATGGTTTTAGA
GTGCAATTTTTAAACATGGAAGTTCGAATTGAGACGAAATCAAAATAAAT
TTCCCAGTGGGGCTGAAATTACAGGTTTTTTTTCCCACCGGGGACGACAT
TTTTGCCAAATTTTCTAGTAGGGCTGGGGTCCCAGTGGGTCTGTGACACA
GGGGTGTAAAAACGGTGAGCTCACTTGGTATTTTAATTCGTTATTCCAGA
TGATCTTACATTTCAGACTTTTTAGTACAAAATGAAAGACGAAGCAGCCA
CAAATAACAAATGTCAAGCTTGGACGAAACTTATTTTCAACCTGATCATT
TTTATTCTTCTCATCATTTCAATGACAACAAAACCATGGGGTGTTTTAAA
GATCGAATCAAGTGATAAAGAAATCGGTAATTTCGGATTATGGCGAGCAT
GTAAAATGGGGAAATCGGATACGGGAAAAGTATGTGACGATATATCAGAT
GGTAATTTCACAGTATTTGCTTACAAGTCCAACCCGTCTGACATCGACGT
TAAATTCGGCAACACAATCGAAAAATTGTGCATTGAATTCCGAAATGAAA
CCGTTTTGAAAAATGGTACAAACACGACAGAGTTACAACCTTACAATAAA
TGTATTACTGAAAGATTCTATCAAAAGGTTGAAGTGGAGAGACTTCGTGT
ATTCATTATTCTTGCCACCGTCGTCTCATTTCTTGTAACCTTTGGCCACA
TCTTTGGTATGTACAAAGGTCAATCAAATGATTTTGTACCTGCGGTGGCA
TCATTGTTGATTCCATTATGGCTCATTATCGGGCTTTCCGTATTCCTTGG
ATTTTACGGTGGTGACCATTTCCAGCTTGTAATGCTTGAATATGGATGGT
CCATGATTTTAGCCTGGATCTGTGCTGTTTTGAGCTTATTAAACACGTTA
TATATGATGTACACAGCTTTTACGTCCGAGATATAAAGGAAGATCAATCT
TATTCTTATAATCATTACAGGCTATAACTATAGCTTTCGGTATTATTTTC
TGTTACATAAATTGCAACTTTATGTTGGTAAATATTGGTGACAGGAGGTG
GAATGTGAAAAACGTTTTTTAGCATTTAAAGGACAACAATCAATCAATAT
AAAATTGAATTTTTTAACATATCATTTGTAGAAATAGCAAAGCTGTACTT
ATTCTTAGATTTCAATGAATGTAATACCTTTCCTCTACAATAAAAGTCAT
AATATTAATATTTTTTTCAAATATGCTTTGCTAAATTTTAAAAACCACAT
GATTTTAAGTGCTCTAAATTACTTCTGG Coding sequence (CDS) from alignment at scaffold_217:37851..44178- >TCONS_00052528 ID=TCONS_00052528|Name=TCONS_00052528|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_217:37851..44178- (Clytia hemisphaerica)
ATGAAAGACGAAGCAGCCACAAATAACAAATGTCAAGCTTGGACGAAACT
TATTTTCAACCTGATCATTTTTATTCTTCTCATCATTTCAATGACAACAA
AACCATGGGGTGTTTTAAAGATCGAATCAAGTGATAAAGAAATCGGTAAT
TTCGGATTATGGCGAGCATGTAAAATGGGGAAATCGGATACGGGAAAAGT
ATGTGACGATATATCAGATGGTAATTTCACAGTATTTGCTTACAAGTCCA
ACCCGTCTGACATCGACGTTAAATTCGGCAACACAATCGAAAAATTGTGC
ATTGAATTCCGAAATGAAACCGTTTTGAAAAATGGTACAAACACGACAGA
GTTACAACCTTACAATAAATGTATTACTGAAAGATTCTATCAAAAGGTTG
AAGTGGAGAGACTTCGTGTATTCATTATTCTTGCCACCGTCGTCTCATTT
CTTGTAACCTTTGGCCACATCTTTGGTATGTACAAAGGTCAATCAAATGA
TTTTGTACCTGCGGTGGCATCATTGTTGATTCCATTATGGCTCATTATCG
GGCTTTCCGTATTCCTTGGATTTTACGGTGGTGACCATTTCCAGCTTGTA
ATGCTTGAATATGGATGGTCCATGATTTTAGCCTGGATCTGTGCTGTTTT
GAGCTTATTAAACACGTTATATATGATGTACACAGCTTTTACGTCCGAGA
TATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052528-exon-scaffold_217-1575043694:43037..44178 | TCONS_00052528-exon-scaffold_217-1575043694:43037..44178 | Clytia hemisphaerica | exon |
| TCONS_00052528-exon-scaffold_217-1575043694:37851..38912 | TCONS_00052528-exon-scaffold_217-1575043694:37851..38912 | Clytia hemisphaerica | exon |
| TCONS_00052528-exon-scaffold_217-1510915933:43037..44178 | TCONS_00052528-exon-scaffold_217-1510915933:43037..44178 | Clytia hemisphaerica | exon |
| TCONS_00052528-exon-scaffold_217-1510915933:37851..38912 | TCONS_00052528-exon-scaffold_217-1510915933:37851..38912 | Clytia hemisphaerica | exon |
| TCONS_00052528-exon-scaffold_217-1491911889:43037..44178 | TCONS_00052528-exon-scaffold_217-1491911889:43037..44178 | Clytia hemisphaerica | exon |
| TCONS_00052528-exon-scaffold_217-1491911889:37851..38912 | TCONS_00052528-exon-scaffold_217-1491911889:37851..38912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:37851..44178 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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