TCONS_00052559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052559
Unique NameTCONS_00052559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length142

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052559 ID=TCONS_00052559|Name=TCONS_00052559|organism=Clytia hemisphaerica|type=transcript|length=142bp
CGTTTCGAGAGAGGGCTTTTCATGTTCAGAAGTCTCCTGTAAGTTGATGA
ATATACTGTGTGCttcattcaaaagttttctcatgACAGGAGAGTGCCAG
TCATTTTTCAAGTTCAACTCTTGAAGATACTGGATGCcacct
Run BLAST on NCBI

transcript from alignment at scaffold_218:168565..168858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052559 ID=TCONS_00052559|Name=TCONS_00052559|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at scaffold_218:168565..168858+ (Clytia hemisphaerica)
CGTTTCGAGAGAGGGCTTTTCATGTTCAGAAGTCTCCTGTAAGTTGATGA
ATATACCTAAAAAAGGTAGGATGGTGTTGTATCATAATTATTTTGGAATT
AATTTATCAGTACTTAATTTATCTACTTAAAAAATTAACTTCATTGAAGA
TTGAGATTAAGAAATCTTTTAATCAAAATGCATAATTCTAAAATTCTGAA
ATACATACTGTGTGCttcattcaaaagttttctcatgACAGGAGAGTGCC
AGTCATTTTTCAAGTTCAACTCTTGAAGATACTGGATGCcacct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033239XLOC_033239Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052559-exon-scaffold_218-1491911889:168565..168616TCONS_00052559-exon-scaffold_218-1491911889:168565..168616Clytia hemisphaericaexon
TCONS_00052559-exon-scaffold_218-1510915933:168565..168616TCONS_00052559-exon-scaffold_218-1510915933:168565..168616Clytia hemisphaericaexon
TCONS_00052559-exon-scaffold_218-1575043694:168565..168616TCONS_00052559-exon-scaffold_218-1575043694:168565..168616Clytia hemisphaericaexon
TCONS_00052559-exon-scaffold_218-1491911889:168769..168858TCONS_00052559-exon-scaffold_218-1491911889:168769..168858Clytia hemisphaericaexon
TCONS_00052559-exon-scaffold_218-1510915933:168769..168858TCONS_00052559-exon-scaffold_218-1510915933:168769..168858Clytia hemisphaericaexon
TCONS_00052559-exon-scaffold_218-1575043694:168769..168858TCONS_00052559-exon-scaffold_218-1575043694:168769..168858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:168565..168858 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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