|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052560 ID=TCONS_00052560|Name=TCONS_00052560|organism=Clytia hemisphaerica|type=transcript|length=1513bp
TGTGGTTTTGAGGTATGATTAAGTTGCTGTAGGAAAGCATGGCAGTcaat
tttctccttattgccaaAATATATTTCTAAGAAACTATAATTAAGTTGAC
TCATAAATTGTGTCGATGCCTATTATCATTCAAAATAATCATAAGTTTCA
TTTTATGGCATAAAATTTACATCATAAGCCCAAAACTGCACAGCTGCTGG
CAACTTTCAAAATAACTTTCATTGCATTTGCTTTCAGTCAcgtgatgtaa
acaaaaaaatcaaaacatccaagtactttcgttttcacccTGTCATCTCC
AATCTCGATCGATCGCACCACATTTTTACAACTTTCAAAAGATCATATTT
CATTTTAAGTTGACCTGTCCTTTTGGACACTAACTAAGGGTTTTCTCTTT
TTACTGAAGATTAATAAGAGTCCTTATAATGCTACATAAGAAAGTTTGGA
TATTTTTCTTCTTGGAAGTTTGTGCTGTTAGAGCTGGAATCATCAGCAGC
ATCAAGAATGACCCGGAAACAGCAATGCCAGTGCCTGACATCATAAGATT
CAATGGATATCCAGCTGAAGTCCATGAAGTAACTACAAAAGATGGTTACA
TCCTTGAGATCCATCGTATACCACATGGAAAAGAAAAACCACATTCAGCC
AATAGACCTGTCTTTTTCCTCCAACATGGTCTATTATGTTCAAGTGCTGA
TTGGGTTGTTAATCCTGTCAATTCTAGTCTAGCATTCCTGTTAGCGGATG
CTGGATTTGATGTATGGCTCGGTAACAGTAGAGGAAATACATATGCCAAG
AAACATGCAACATTCCCTGTCGATTCTGATGAGTTCTGGAAATTCAGttg
GGATGATATGGCTGCAAAAGATATCCCAGCAGTCATCGAATACATCAAAC
AACAAACAGGAGTAGAGCAATTACATTATGCTGGTCACTCACAAGGAACC
ATGATTGCATTTGCTGGTTTTTCACAAAGCCAAGAACTTGccaaatcaat
caaaaagttTTATGGCTTAGCACCTGTTGCTTACCTTGGGAATATGGAAA
GTCCGTTGAAGTATTTAGCAAGTGTCACACCAGAACTTGAGTTCATTTTC
GATGTATTTGGAGTTCGAGATTTCATGCCACAAAATTGGATTATCACATG
GCTTGCATCACATCTTTGCACCAAATCAGTACTAAAAGACATCTGTGCCa
atgttgtttttgttatttgtgGATATGACAAACCGCAGATGAACGAGACT
CGTTTGGACGTTTATATGACGCATTCACCTGCTGGCACATCAGTACAAAA
TGTTGTTCATTATGCTCAGgcctACAAATCAGCTGCTTTCCAAATGTATG
ATTGGGGAAGGGAAGAAAACTTGAAAAGATACAATCAGGTAAAAGTTACT
GTATGAACCTTGTACCAATTCGCATCGCTatttgttaaatttcatattAT
AGAAGGTAAACATGACAAGGACAAATCGCTCATATCTGTAGATAGGTTTA
GGGTCACTTATTA Run BLAST on NCBI protein sequence of TCONS_00052560-protein >TCONS_00052560-protein ID=TCONS_00052560-protein|Name=TCONS_00052560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MLHKKVWIFFFLEVCAVRAGIISSIKNDPETAMPVPDIIRFNGYPAEVHE
VTTKDGYILEIHRIPHGKEKPHSANRPVFFLQHGLLCSSADWVVNPVNSS
LAFLLADAGFDVWLGNSRGNTYAKKHATFPVDSDEFWKFSWDDMAAKDIP
AVIEYIKQQTGVEQLHYAGHSQGTMIAFAGFSQSQELAKSIKKFYGLAPV
AYLGNMESPLKYLASVTPELEFIFDVFGVRDFMPQNWIITWLASHLCTKS
VLKDICANVVFVICGYDKPQMNETRLDVYMTHSPAGTSVQNVVHYAQAYK
SAAFQMYDWGREENLKRYNQVKVTV Run BLAST on NCBI transcript from alignment at scaffold_218:174015..182759+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052560 ID=TCONS_00052560|Name=TCONS_00052560|organism=Clytia hemisphaerica|type=transcript|length=8745bp|location=Sequence derived from alignment at scaffold_218:174015..182759+ (Clytia hemisphaerica)
TGTGGTTTTGAGGTATGATTAAGTTGCTGTAGGAAAGCATGGCAGTcaat
tttctccttattgccaaAATATATTTCTAAGAAACTATAATTAAGTTGAC
TCATAAATTGTGTCGATGCCTATTATCATTCAAAATAATCATAAGTTTCA
TTTTATGGCATAAAATTTACATCATAAGCCCAAAACTGCACAGCTGCTGG
CAACTTTCAAAATAACTTTCATTGCATTTGCTTTCAGTCAcgtgatgtaa
acaaaaaaatcaaaacatccaagtactttcgttttcacccTGTCATCTCC
AATCTCGATCGATCGCACCACATTTTTACAACTTTCAAAAGATCATATTT
CATTTTAAGTTGACCTGTCCTTTTGGACACTAACTAAGGGTTTTCTCTTT
TTACTGAAGATTAATAAGAGTCCTTATAATGCTACATAAGAAAGTTTGGA
TATTTTTCTTCTTGGAAGTTTGTGCTGTTAGAGCTGGAATCATCAGCAGC
ATCAAGAATGACCCGGAAACAGCAATGCCAGTGGTATGTGTTTCAGTATT
TTATATGTATACTGTAGTTTTATTCCTACATAGACTCCTGTCTACTTTCT
AGATTCTTTCCAGTCATACACTGCCCTGTGGCCCTGACAAAAAATAGAAC
TACAGTACAATGCCAGATGCCAgaagaggaccctgccgacgcaccggact
taacgaacacgggacacgcgaaagtccggtgtaagatgagaatttttttt
accaccagaCAATCTCTACACACGACtaaaggaagtcggatgtctggtgt
cggagaaggattttttccaccggacaatcaaaacacataACCAGTCCGGT
gtgtccggtgtttcttaattttttgtttcataaatgtctggCGTCcgaaa
ttccctgtatgcaacaccggactgacaccggactgacaccggacttacaA
CTTACTGCGTCCGGTgcagcgaaaggatactttttgccaccggacaaata
caccggacagtccggtgcgtcggcagggtcctgatgccagatgatctcaa
tcgaacggaatcgacgatcagGCAgtccaaccaaatcaaacgcaatcgag
cGATTGAAGTTCGATTTTCGaacgaacgtcaaaattctgggtaatattcg
attggttcgattgttgtttgactggttcgattgtcgttgttgtcgggaaa
cgtcgcccAGTTCGGAAGCGTATCGTATTGTTGAACGACCCTGCTGGTGC
ACCCAGTCGGGTGCTGTCGGGTGTTTTGTCGGgtgctgaaatttctaaat
ttgcaaaaacaccaGACAATAGCGCACCCAAAAGTACAGTTGGGTGCTAA
AATTCCTAACTTTGATACATGTCGGGTGCTGTTAAAAGCGcccaagataa
aaaaaagtccaaaaaatggcgatttcgatgacgtcagcattattAATGac
agtaaaaaaattaaaacgtcGACCAGCTCATCATGTAGCCCTGATCATAG
GCTTTCAGAAAAGTATATGGTTTAGTAGTAGTTTTTTTTTTTTTTATTTA
TTAAACCAATTtcatttatcttatttttgttAATGCTTTTATATGTAGGG
AGAACAAACATTTATGTTGTTAACTActgaaatatatagatagatagtaG
TATGTTTAAGTAGCACCTGACAAAagtgcacccgactgtcggatgtttaa
atttctaacttcaaacacccgacaacagcacccgactgtcgggtgcactg
GCAGGGTCGTATTGTTGATCATCagaccatactgctttctaaccgtcaaa
acaaagatgacggcaaaaaatagacaatcaactccagacgatctcaatcg
aacgcaatcgaacatcaatcgaacgcaatcgaatatcaatcgaatctgaa
aattgcggtaatattcgattgagattcaattgtgttcgacaatcgaattt
caattggtcgattgcgttcgatttggtttgactggtttgatcatcgattc
cgttcgattgagattgtctggagtcaactttcatattattcctatctcta
aataagggtgtcaaaattagaagacggatgtcaaaattagaccaacttac
ggtatagaAGAGGACGGGTGGTGACATTagacatagtgtcctcccccccc
tttataaaggggggggattctgattttggccctttttttaaagtatgggg
ggaaatgaaaaatttgaaatttgctgggggaaaataaagaggggggaaaa
ccatAANNgaacttcactgatctcaaggtgatcttgttgcaaaacctgtt
taagcaataaaatcagcaaatcttttgggataaaccaacttttcaataca
atttccagcactttcaaggctattttttcaagctttccaaaatttcaaac
ttgacttaaggcatttttatgttaaccatatggggaaccgcaaaatcttc
aaatagctgggggaattcaaaaaagaggggggaaccgaaaaattttgaaa
tatggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNcgaaaaattttgaaatatggtgggggaaataaaaga
ggggggaatggagaaaaattttgatttttagtggggggaaccaacccagg
aggacactatgattagaccaacttacaatAATATTTCGCACAAAAGTGAA
TTTTCCTGAAGGATTTTGAAAATCGCAAGTAGTTTTTAAGTGCCTTAACT
TGTGGTTGGAAAGTAATAAAAGTTGATCTTATGTTGACATctctttctat
caatttcagctgataaaaagggtgttggGGTGTTGACATTATGCCAAGTT
CTggtaatacacctttcccgtaattcaaacttctcagttaaatggcccgg
gaaaatgtgcgcccACCACCGTTGTGTGTAAAATTATTTGGGAAGTAAAC
AAACGCGTTTTttcctgcgaggggttagggaaagtgggttttcagcttct
aacttttgatagcaatcttcttttggcaaaagattttcaggttggtataa
tatcatgaatagattgactgagattgaacatactaaaatttgaggagATT
TTGTTTGACAGAACTTACAACTTACAACTTACTCTACggaaacgcaggca
aaaacgggtttgtttacctccagagactaAATGGTgaagagcatcaaaat
aatgcatgtgcattagttttacgaattacgtaTTACGAATTACGAATTGT
ATTCGGGACAGCCTTCTTAGAGATATCAGAATTAAAAGAAAGATTGactg
attgacagattgaaacaaagACGTATCaatgattctgacctttttattat
tactaggtttaaagaagggtgtctgGATTAGATGAAGATTGTCGTTGTTA
GACCAACTTAGGGTACAGTTTCTAACTCTGATTtttaggagcttaggatc
tgaAGATCCAAAAGTCTGTGAAATGTCTGATTAGGCTGAGATCACAGCCT
GGAAGCCCTTATACCTCcccaaataaaaaatatctgaTTAGATAAAGTAG
AAAGCGGGATAATGTCATTCTTGCTTGAACCTTGAATTAAGCAAAACGGG
AAAAATATACCCAGAGATGCCAACATATTCAGATTATAATTGTAGCAACA
AGCTAAAATTAAGAAGGAAAAGCTTAGATTATATAGGTTAGAATGAATAA
TTCTAAGTAAAGTATATTGAAACCCCAAGcattttttgtacatttgtTCA
GTCTCAGGAAACTTCAAAattattaaaagtttttgtGGGTTACCTTGTAA
AGAAAGTCCACTTTCTCTTTTTACTTAACttgtgcataatttttaaaaat
tgaaattctgagagaatttaatttggcagtttCTAAAGTCATTTCAATTT
TGGGCATGACTGATCTTTTGTTNAATTTGGCAGTTTCTAAAGTCATTTCA
ATTTTGGGCATGACTGATCTTTGTAATCAGtagtttttgacaatttttct
cgaaaatgtCATATATATTGAACACATCTTAAGATATCCAATCCATAAAA
TTGATTAACCTGCTTTTCACACTTTCTGAAAAGTGTATTTCGACTATGAA
ACTTGTTGGTCAAATTAAAATTAAGTAATATTTAAGTTAACAGGGCTCCA
TGAAAGATTCAAAAACCCTAAAAACTGTACAAATCGACTCCAAGTCGTgt
cttttgatgaaaaaaaccATCCAAATTTGTATGAGGCCTCTACCAAGTCA
CTATTCGAACTTTCGTTTAAGCCTGACATCATAAGATTCAATGGATATCC
AGCTGAAGTCCATGAAGTAACTACAAAAGATGGTTACATCCTTGAGATCC
ATCGTATACCACATGGAAAAGAAAAACCACATTCAGCCAATAGACCTGTC
TTTTTCCTCCAACATGGTCTATTATGTTCAAGTGCTGATTGGGTTGTTAA
TCCTGTCAATTCTAGTCTAGCATTCCTGTTAGCGGATGCTGGATTTGATG
TATGGCTCGGTAACAGTAGAGGAAATACATATGCCAAGAAACATGCAACA
TTCCCTGTCGATTCTGATGAGTTCTGGAAATTCAGGTAATAATATTtaga
tttaaagtttttttttaattttctggtCGTTTCTTAAAAGAGAAAATTGA
ACTTAGTGTATAGTGGGAAAATCCATGGAACATGATTATACCCTTTACTG
CCAATGGTCACAGTTCCCTGCTTTGGGAATTAAAAAATCTATAGAATAAT
TTTCATGATTCCAAGATTCCAATGAtagatttaattttaattcatGAAGA
TTTAAAGACATTAAGTTAACAGCTTGATTCGAAATAAAATTCTTCTCATA
CCTATGTAAGACATATTTTTAcaaacttcattttattttagttgGGATGA
TATGGCTGCAAAAGATATCCCAGCAGTCATCGAATACATCAAACAACAAA
CAGGAGTAGAGCAATTACATTATGCTGGTCACTCACAAGGAACCATGATT
GCATTTGCTGGTTTTTCACAAAGCCAAGAACTTGccaaatcaatcaaaaa
gttTTATGGCTTAGCACCTGTTGCTTACCTTGGGAATATGGAAAGTCCGT
TGAAGTATTTAGCAAGTGTCACACCAGAACTTGAGGTTTGAATTACCTGA
ATTATTATAAGTATTTTATGAGTCTTTTAGAGAAATTTCTTACAAAGAAA
TAAGTTTTAGTATAGTTAGGTATAGTCACGTTCCCTCAAGGGAAATTGAA
TTTCCATAGAATAAGACAATGCaaggaaattttattttcatggaATAAGA
GAGCACATGAcgggaatcggattttcatgGAATAAGTTGAGAGTGCATCG
AACGGTAGAGGTTCGTTTAAGATAATTTCTCAGTTTCTTGTTAAAGGTCG
CTTTGTATATTATGGAATAATGAAgtctatcgaatagtagaacattgaat
aaaagagcgtcaactgtatattgaaaacaatttctttttttcccagTTCA
TTTTCGATGTATTTGGAGTTCGAGATTTCATGCCACAAAATTGGATTATC
ACATGGCTTGCATCACATCTTTGCACCAAATCAGTACTAAAAGACATCTG
TGCCaatgttgtttttgttatttgtgGATATGACAAACCGCAGATGAACG
AGGTAACTATTGGTTGGTTTATACGAGACCTAACAAACCTTGAATCTAAG
CCTTCGAACCCTCTCAATTCCAAGGCACCACAAGATGGTCCTTTCCTAAC
TTTGATTGgttataacttttaaaaatatgaaCTTTTTAAGActtaaaaat
atacaatttaaCAGAGTAACGTTTTTTACTATCTTTGCAAAGAATATTAA
GTCTTAATGAAGTTTAATGGAAAAAATAGTGCTTCTCGAAAGCAAATTGT
CGATAtgtaaataagttttttttaaagctgCATCAAGAGATAGAGGTatt
gattttgagatttttaagTTAACAACTTCTTTCGATAGTTATTGAACTGT
ACCCttcaaaagcaaaaatgaaTCTTCTATGTCCAAAATTACATTGAAAA
TCAAATCATGGGCTCACCTTTTTAATGCAGCTACTCACTACTAGGTCTTA
AAACATCAATTGTGGACacggttgatgttttttatccacagtcaataatt
tttatggacagtcaatatccaaacatcgactgtcaatacttttcatcaac
tgtcaatatccagatatcaacagtcaatatccagacatcagcagtcaata
tccaaacatcgactgtcaatacttttcatcaactgttgagattatttaat
tgactgctgatgtctggataatgattgttgatatctggatattgacagtt
gatgaaaagtattgacagttgatgaaaagtattgacagtcgatgtttgca
tattgactgtccataaaaatgattgactgtggataaaaaacatcaaccgt
GTCCACAATTGATGTTGTCAGGCCTAATAGTGACCTTGATGACTAAACCA
AATTTCTTCACTGTACAATAAAAGCTTTCATTCAGCCCTACTTACAACGC
TTGTGTATTTTTCTTTCAGACTCGTTTGGACGTTTATATGACGCATTCAC
CTGCTGGCACATCAGTACAAAATGTTGTTCATTATGCTCAGGTAGGTACT
TATGAcataactttcgcgaattcaagggaaaaaatattttttcgcaagca
taaacttttttgaatcaAGACATAGACATTTTCACAAGAAAAAATTCCTT
AGAaagacaaatacttcttgaattaGATTGACACTTTTACCTGTGAGCCT
TTAACAGGTTAAAAAGTAccataatttttggacctacctggaggtcctat
aaattaacctgtgtccgtccgtccgtctgttaccaacttttctcgggatt
gaatcataggaatcttttgatttttggtacaaaggtgcaaaatggtggtg
ggcaAAATGTGacggagcctgattttcaaaaaaaaatgtttttgggcaaa
tttgggccaaaaaacggctaaaaaaagggttttttggacttagtgtgaaa
aattggatcattaattttttccaattttttttgcatggaagtaAGGTACC
Atgataggtaaaagatggctaaagcagattttttgcaaaaaagatttgtt
ggctcaaaaaacgcatgtttatctataagaatcactattaataagcctac
atcaatgttcttagtcaaattactcaatttttttatgagatagatgtttt
tttgctcacgagggcttactttcgaagaatatgtgtgtttagacttgaaa
ttttggttgattggcgtgtttttctaaaaaaactggccaaattcgatatt
tttttataagcacattatcaattacttaggttttagcttttctcgagatt
ggctctttcattctttatgatttattgcacaaacatgcataactataaac
cctcgaatgtgacggagctcgattttttgaaaaaaattttgggggtaaat
ttcaggtaaaaaacagccaaaaaaagggttttttggactttgtgaaatat
tggatcattgtttttttctgattttttgcatggaagtaggtaaaagatgg
ctcaagcagatttttgtaaaaagagaattttgttggctcaaaaaacgcat
ctttatctataataagaatcactattagtAAGCAAACATCAAtattctta
gccaaattactcaaatttttgatgagatagatgtttgtttttgctcacaa
aggcttgaatatgaaagaatatttcaagagcatgaaattttggtttctaa
acgtgattttataagaaacaaacgactaattttaatagatcgtcacaaTT
TGtgttctgactgattgtttaatggtcacgtcacgtagatatcaattata
tatatgTTAAatacataaccaggtaggtcaataaaagtatcacttgttgc
aCTTGTTTCATTTTATCTTGGAAGTTTTATAGATTTATATacagattttt
ctattttgttaattttgtgaAGCATAaactttcaagaattttcaaagatt
ttcgcAAAAAGGTCACGATTTGGAATTTGAGCTATTTTTACAATCCTTAG
GGACTAGACTGGAATTAGATTATGtgattttacgacccttagtgggattt
TGAAGATCCAAAAAGGGACTCtcaagggcggcacatacccgtacccttct
TTTGCCTAGGTATCCCCCGAAAATATCGTTCCCGATAAGAACAATACCCT
GATAANGTTCTTTTGCCTAGGTATCCCCCGAGAATATCGTTCCCGATAAG
AACAATACCCTGATAAGTCATATAGCTCGTCTAAGTTGAGACTTTTCTTG
AAATAAACCCAACAGCCTTAAAACCTCTCAACGTTCATACCACATCTAGT
GGATGTTTTGtccattttcgatgtttttttgACTTGTGTGCGCTCGAATA
CGTCATTTTAGATTAAGTATTTGTAACAtcgctttttcttttgaaataca
ggcctACAAATCAGCTGCTTTCCAAATGTATGATTGGGGAAGGGAAGAAA
ACTTGAAAAGATACAATCAGGTAAAAGTTACTGTATGAACCTTGTACCAA
TTCGCATCGCTatttgttaaatttcatattATAGAAGGTAAACATGACAA
GGACAAATCGCTCATATCTGTAGATAGGTTTAGGGTCACTTATTA Coding sequence (CDS) from alignment at scaffold_218:174015..182759+ >TCONS_00052560 ID=TCONS_00052560|Name=TCONS_00052560|organism=Clytia hemisphaerica|type=CDS|length=5868bp|location=Sequence derived from alignment at scaffold_218:174015..182759+ (Clytia hemisphaerica)
ATGCTACATAAGAAAGTTTGGATATTTTTCTTCTTGGAAGTTTGTGCTGT
TAGAGCTGGAATCATCAGCAGCATCAAGAATGACCCGGAAACAGCAATGC
CAGTGCCTGACATCATAAGATTCAATGGATATCCAGCTGAAGTCCATGAA
GTAACTACAAAAGATGGTTACATCCTTGAGATCCATCGTATACCACATGG
AAAAGAAAAACCACATTCAGCCAATAGACCTGTCTTTTTCCTCCAACATG
GTCTATTATGTTCAAGTGCTGATTGGGTTGTTAATCCTGTCAATTCTAGT
CTAGCATTCCTGTTAGCGGATGCTGGATTTGATGTATGGCTCGGTAACAG
TAGAGGAAATACATATGCCAAGAAACATGCAACATTCCCTGTCGATTCTG
ATGAGTTCTGGAAATTCAGttgGGATGATATGGCTGCAAAAGATATCCCA
GCAGTCATCGAATACATCAAACAACAAACAGGAGTAGAGCAATTACATTA
TGCTGGTCACTCACAAGGAACCATGATTGCATTTGCTGGTTTTTCACAAA
GCCAAGAACTTGccaaatcaatcaaaaagttTTATGGCTTAGCACCTGTT
GCTTACCTTGGGAATATGGAAAGTCCGTTGAAGTATTTAGCAAGTGTCAC
ACCAGAACTTGAGTTCATTTTCGATGTATTTGGAGTTCGAGATTTCATGC
CACAAAATTGGATTATCACATGGCTTGCATCACATCTTTGCACCAAATCA
GTACTAAAAGACATCTGTGCCaatgttgtttttgttatttgtgGATATGA
CAAACCGCAGATGAACGAGACTCGTTTGGACGTTTATATGACGCATTCAC
CTGCTGGCACATCAGTACAAAATGTTGTTCATTATGCTCAGgcctACAAA
TCAGCTGCTTTCCAAATGTATGATTGGGGAAGGGAAGAAAACTTGAAAAG
ATACAATCAGGTAAAAGTTACTGTATGAATGCTACATAAGAAAGTTTGGA
TATTTTTCTTCTTGGAAGTTTGTGCTGTTAGAGCTGGAATCATCAGCAGC
ATCAAGAATGACCCGGAAACAGCAATGCCAGTGCCTGACATCATAAGATT
CAATGGATATCCAGCTGAAGTCCATGAAGTAACTACAAAAGATGGTTACA
TCCTTGAGATCCATCGTATACCACATGGAAAAGAAAAACCACATTCAGCC
AATAGACCTGTCTTTTTCCTCCAACATGGTCTATTATGTTCAAGTGCTGA
TTGGGTTGTTAATCCTGTCAATTCTAGTCTAGCATTCCTGTTAGCGGATG
CTGGATTTGATGTATGGCTCGGTAACAGTAGAGGAAATACATATGCCAAG
AAACATGCAACATTCCCTGTCGATTCTGATGAGTTCTGGAAATTCAGttg
GGATGATATGGCTGCAAAAGATATCCCAGCAGTCATCGAATACATCAAAC
AACAAACAGGAGTAGAGCAATTACATTATGCTGGTCACTCACAAGGAACC
ATGATTGCATTTGCTGGTTTTTCACAAAGCCAAGAACTTGccaaatcaat
caaaaagttTTATGGCTTAGCACCTGTTGCTTACCTTGGGAATATGGAAA
GTCCGTTGAAGTATTTAGCAAGTGTCACACCAGAACTTGAGTTCATTTTC
GATGTATTTGGAGTTCGAGATTTCATGCCACAAAATTGGATTATCACATG
GCTTGCATCACATCTTTGCACCAAATCAGTACTAAAAGACATCTGTGCCa
atgttgtttttgttatttgtgGATATGACAAACCGCAGATGAACGAGACT
CGTTTGGACGTTTATATGACGCATTCACCTGCTGGCACATCAGTACAAAA
TGTTGTTCATTATGCTCAGgcctACAAATCAGCTGCTTTCCAAATGTATG
ATTGGGGAAGGGAAGAAAACTTGAAAAGATACAATCAGGTAAAAGTTACT
GTATGAATGCTACATAAGAAAGTTTGGATATTTTTCTTCTTGGAAGTTTG
TGCTGTTAGAGCTGGAATCATCAGCAGCATCAAGAATGACCCGGAAACAG
CAATGCCAGTGCCTGACATCATAAGATTCAATGGATATCCAGCTGAAGTC
CATGAAGTAACTACAAAAGATGGTTACATCCTTGAGATCCATCGTATACC
ACATGGAAAAGAAAAACCACATTCAGCCAATAGACCTGTCTTTTTCCTCC
AACATGGTCTATTATGTTCAAGTGCTGATTGGGTTGTTAATCCTGTCAAT
TCTAGTCTAGCATTCCTGTTAGCGGATGCTGGATTTGATGTATGGCTCGG
TAACAGTAGAGGAAATACATATGCCAAGAAACATGCAACATTCCCTGTCG
ATTCTGATGAGTTCTGGAAATTCAGttgGGATGATATGGCTGCAAAAGAT
ATCCCAGCAGTCATCGAATACATCAAACAACAAACAGGAGTAGAGCAATT
ACATTATGCTGGTCACTCACAAGGAACCATGATTGCATTTGCTGGTTTTT
CACAAAGCCAAGAACTTGccaaatcaatcaaaaagttTTATGGCTTAGCA
CCTGTTGCTTACCTTGGGAATATGGAAAGTCCGTTGAAGTATTTAGCAAG
TGTCACACCAGAACTTGAGTTCATTTTCGATGTATTTGGAGTTCGAGATT
TCATGCCACAAAATTGGATTATCACATGGCTTGCATCACATCTTTGCACC
AAATCAGTACTAAAAGACATCTGTGCCaatgttgtttttgttatttgtgG
ATATGACAAACCGCAGATGAACGAGACTCGTTTGGACGTTTATATGACGC
ATTCACCTGCTGGCACATCAGTACAAAATGTTGTTCATTATGCTCAGgcc
tACAAATCAGCTGCTTTCCAAATGTATGATTGGGGAAGGGAAGAAAACTT
GAAAAGATACAATCAGGTAAAAGTTACTGTATGAATGCTACATAAGAAAG
TTTGGATATTTTTCTTCTTGGAAGTTTGTGCTGTTAGAGCTGGAATCATC
AGCAGCATCAAGAATGACCCGGAAACAGCAATGCCAGTGCCTGACATCAT
AAGATTCAATGGATATCCAGCTGAAGTCCATGAAGTAACTACAAAAGATG
GTTACATCCTTGAGATCCATCGTATACCACATGGAAAAGAAAAACCACAT
TCAGCCAATAGACCTGTCTTTTTCCTCCAACATGGTCTATTATGTTCAAG
TGCTGATTGGGTTGTTAATCCTGTCAATTCTAGTCTAGCATTCCTGTTAG
CGGATGCTGGATTTGATGTATGGCTCGGTAACAGTAGAGGAAATACATAT
GCCAAGAAACATGCAACATTCCCTGTCGATTCTGATGAGTTCTGGAAATT
CAGttgGGATGATATGGCTGCAAAAGATATCCCAGCAGTCATCGAATACA
TCAAACAACAAACAGGAGTAGAGCAATTACATTATGCTGGTCACTCACAA
GGAACCATGATTGCATTTGCTGGTTTTTCACAAAGCCAAGAACTTGccaa
atcaatcaaaaagttTTATGGCTTAGCACCTGTTGCTTACCTTGGGAATA
TGGAAAGTCCGTTGAAGTATTTAGCAAGTGTCACACCAGAACTTGAGTTC
ATTTTCGATGTATTTGGAGTTCGAGATTTCATGCCACAAAATTGGATTAT
CACATGGCTTGCATCACATCTTTGCACCAAATCAGTACTAAAAGACATCT
GTGCCaatgttgtttttgttatttgtgGATATGACAAACCGCAGATGAAC
GAGACTCGTTTGGACGTTTATATGACGCATTCACCTGCTGGCACATCAGT
ACAAAATGTTGTTCATTATGCTCAGgcctACAAATCAGCTGCTTTCCAAA
TGTATGATTGGGGAAGGGAAGAAAACTTGAAAAGATACAATCAGGTAAAA
GTTACTGTATGAATGCTACATAAGAAAGTTTGGATATTTTTCTTCTTGGA
AGTTTGTGCTGTTAGAGCTGGAATCATCAGCAGCATCAAGAATGACCCGG
AAACAGCAATGCCAGTGCCTGACATCATAAGATTCAATGGATATCCAGCT
GAAGTCCATGAAGTAACTACAAAAGATGGTTACATCCTTGAGATCCATCG
TATACCACATGGAAAAGAAAAACCACATTCAGCCAATAGACCTGTCTTTT
TCCTCCAACATGGTCTATTATGTTCAAGTGCTGATTGGGTTGTTAATCCT
GTCAATTCTAGTCTAGCATTCCTGTTAGCGGATGCTGGATTTGATGTATG
GCTCGGTAACAGTAGAGGAAATACATATGCCAAGAAACATGCAACATTCC
CTGTCGATTCTGATGAGTTCTGGAAATTCAGttgGGATGATATGGCTGCA
AAAGATATCCCAGCAGTCATCGAATACATCAAACAACAAACAGGAGTAGA
GCAATTACATTATGCTGGTCACTCACAAGGAACCATGATTGCATTTGCTG
GTTTTTCACAAAGCCAAGAACTTGccaaatcaatcaaaaagttTTATGGC
TTAGCACCTGTTGCTTACCTTGGGAATATGGAAAGTCCGTTGAAGTATTT
AGCAAGTGTCACACCAGAACTTGAGTTCATTTTCGATGTATTTGGAGTTC
GAGATTTCATGCCACAAAATTGGATTATCACATGGCTTGCATCACATCTT
TGCACCAAATCAGTACTAAAAGACATCTGTGCCaatgttgtttttgttat
ttgtgGATATGACAAACCGCAGATGAACGAGACTCGTTTGGACGTTTATA
TGACGCATTCACCTGCTGGCACATCAGTACAAAATGTTGTTCATTATGCT
CAGgcctACAAATCAGCTGCTTTCCAAATGTATGATTGGGGAAGGGAAGA
AAACTTGAAAAGATACAATCAGGTAAAAGTTACTGTATGAATGCTACATA
AGAAAGTTTGGATATTTTTCTTCTTGGAAGTTTGTGCTGTTAGAGCTGGA
ATCATCAGCAGCATCAAGAATGACCCGGAAACAGCAATGCCAGTGCCTGA
CATCATAAGATTCAATGGATATCCAGCTGAAGTCCATGAAGTAACTACAA
AAGATGGTTACATCCTTGAGATCCATCGTATACCACATGGAAAAGAAAAA
CCACATTCAGCCAATAGACCTGTCTTTTTCCTCCAACATGGTCTATTATG
TTCAAGTGCTGATTGGGTTGTTAATCCTGTCAATTCTAGTCTAGCATTCC
TGTTAGCGGATGCTGGATTTGATGTATGGCTCGGTAACAGTAGAGGAAAT
ACATATGCCAAGAAACATGCAACATTCCCTGTCGATTCTGATGAGTTCTG
GAAATTCAGttgGGATGATATGGCTGCAAAAGATATCCCAGCAGTCATCG
AATACATCAAACAACAAACAGGAGTAGAGCAATTACATTATGCTGGTCAC
TCACAAGGAACCATGATTGCATTTGCTGGTTTTTCACAAAGCCAAGAACT
TGccaaatcaatcaaaaagttTTATGGCTTAGCACCTGTTGCTTACCTTG
GGAATATGGAAAGTCCGTTGAAGTATTTAGCAAGTGTCACACCAGAACTT
GAGTTCATTTTCGATGTATTTGGAGTTCGAGATTTCATGCCACAAAATTG
GATTATCACATGGCTTGCATCACATCTTTGCACCAAATCAGTACTAAAAG
ACATCTGTGCCaatgttgtttttgttatttgtgGATATGACAAACCGCAG
ATGAACGAGACTCGTTTGGACGTTTATATGACGCATTCACCTGCTGGCAC
ATCAGTACAAAATGTTGTTCATTATGCTCAGgcctACAAATCAGCTGCTT
TCCAAATGTATGATTGGGGAAGGGAAGAAAACTTGAAAAGATACAATCAG
GTAAAAGTTACTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052560-exon-scaffold_218-1491911889:174015..174547 | TCONS_00052560-exon-scaffold_218-1491911889:174015..174547 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1510915933:174015..174547 | TCONS_00052560-exon-scaffold_218-1510915933:174015..174547 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1575043694:174015..174547 | TCONS_00052560-exon-scaffold_218-1575043694:174015..174547 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1491911889:178336..178649 | TCONS_00052560-exon-scaffold_218-1491911889:178336..178649 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1510915933:178336..178649 | TCONS_00052560-exon-scaffold_218-1510915933:178336..178649 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1575043694:178336..178649 | TCONS_00052560-exon-scaffold_218-1575043694:178336..178649 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1491911889:178956..179199 | TCONS_00052560-exon-scaffold_218-1491911889:178956..179199 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1510915933:178956..179199 | TCONS_00052560-exon-scaffold_218-1510915933:178956..179199 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1575043694:178956..179199 | TCONS_00052560-exon-scaffold_218-1575043694:178956..179199 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1491911889:179561..179716 | TCONS_00052560-exon-scaffold_218-1491911889:179561..179716 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1510915933:179561..179716 | TCONS_00052560-exon-scaffold_218-1510915933:179561..179716 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1575043694:179561..179716 | TCONS_00052560-exon-scaffold_218-1575043694:179561..179716 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1491911889:180634..180705 | TCONS_00052560-exon-scaffold_218-1491911889:180634..180705 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1510915933:180634..180705 | TCONS_00052560-exon-scaffold_218-1510915933:180634..180705 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1575043694:180634..180705 | TCONS_00052560-exon-scaffold_218-1575043694:180634..180705 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1491911889:182566..182759 | TCONS_00052560-exon-scaffold_218-1491911889:182566..182759 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1510915933:182566..182759 | TCONS_00052560-exon-scaffold_218-1510915933:182566..182759 | Clytia hemisphaerica | exon |
| TCONS_00052560-exon-scaffold_218-1575043694:182566..182759 | TCONS_00052560-exon-scaffold_218-1575043694:182566..182759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:174015..182759 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
Blast
BLAST of TCONS_00052560 vs. Swiss-Prot (Human)
Match: LICH (Lysosomal acid lipase/cholesteryl ester hydrolase OS=Homo sapiens GN=LIPA PE=1 SV=2) HSP 1 Score: 329.717 bits (844), Expect = 1.998e-107 Identity = 168/349 (48.14%), Postives = 229/349 (65.62%), Query Frame = 3
Query: 453 FFFLEVCAV--------RAGIISSIKNDPETAMPVPDIIRFNGYPAEVHEVTTKDGYILEIHRIPHGKEKPHS--ANRPVFFLQHGLLCSSADWVVNPVNSSLAFLLADAGFDVWLGNSRGNTYAKKHATFPVDSDEFWKFSWDDMAAKDIPAVIEYIKQQTGVEQLHYAGHSQGTMIAFAGFSQSQELAKSIKKFYGLAPVAYLGNMESPLKYLASVTPELEFIFDVFGVRDFMPQNWIITWLASHLCTKSVLKDICANVVFVICGYDKPQMNETRLDVYMTHSPAGTSVQNVVHYAQAYKSAAFQMYDWGRE-ENLKRYNQVKVTV*TLYQFASLFVKFHIIEGKHD 1466
F L VC V G ++++ DPET M V +II + G+P+E + V T+DGYIL ++RIPHG+ K HS +PV FLQHGLL S++WV N NSSL F+LADAGFDVW+GNSRGNT+++KH T V DEFW FS+D+MA D+PA I +I +TG EQ++Y GHSQGT I F FSQ ELAK IK F+ L PVA + SP+ L + L I D+FG ++F+PQ+ + WL +H+CT +LK++C N+ F++CG+++ +N +R+DVY THSPAGTSVQN++H++QA K FQ +DWG +N YNQ + Y + V + G HD
Sbjct: 5 FLGLVVCLVLWTLHSEGSGGKLTAV--DPETNMNVSEIISYWGFPSEEYLVETEDGYILCLNRIPHGR-KNHSDKGPKPVVFLQHGLLADSSNWVTNLANSSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDEFWAFSYDEMAKYDLPASINFILNKTGQEQVYYVGHSQGTTIGFIAFSQIPELAKRIKMFFALGPVASVAFCTSPMAKLGRLPDHL--IKDLFGDKEFLPQSAFLKWLGTHVCTHVILKELCGNLCFLLCGFNERNLNMSRVDVYTTHSPAGTSVQNMLHWSQAVKFQKFQAFDWGSSAKNYFHYNQ---SYPPTYNVKDMLVPTAVWSGGHD 345
The following BLAST results are available for this feature:
|
