TCONS_00052563 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052563
Unique Name	TCONS_00052563
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2072

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_218:208889..212826+
coding sequence from alignment at scaffold_218:208889..212826+

transcript sequence

>TCONS_00052563 ID=TCONS_00052563|Name=TCONS_00052563|organism=Clytia hemisphaerica|type=transcript|length=2072bp
gaaatatttctcTCATTTGATTCTCAGACAATTGAAAGAGAAGACGAAAC
AACTTGGTTTGTTGAAGAAGAATCAAACAGCTGAGCGAGAAAAACAACAT
CAGCTCGTCAACGAgtccaaaaaagttgaacaagAAATACAACAGCTGGA
GGACGAAAAAGATAAGCGAGACAAACGTATCATCATGTTAGAAGATGCAT
TACGTGAAAGCGTCACTATAGCTGTTGAACGTGAAGATCTTCTGGCAAGT
CACAAAGAAATGTACGAAAACGCTGTCAATAAGATGAACTCAACCAATAG
CGAATATGAGAGAGTTGAACTGGAAAAGAAAATCACAAACATCAAGAATG
CGTTTCTTATTTTATCTCTCAGTGAGAAAGACGCACTGATTGCATCGATG
GAAGCGACCAGGAAAAGACAGAACGAAGAACTGTTTAATATCAAACAAGA
AACCTTACTAGCATCTATTAGTGAGAAAGACAATCAAATCGCACACTTGG
AATTACAATCGTCAAAAACCAAGAAACAAGATATCAAAcaattgaaactt
gaaaaagaaaaattcgttGAACAATTAAAAGCACAGAATAACAATCGAAT
GACGATCTTAAGTAACggtgaaaatgagaacaatCTGTTAATCAACGAAC
TTGAAAGTGCTCCGCCAGAACAGGTTTACGAAGCTATCCGTCATCTCCAC
AATAGTACAAGTAAACTAGAGTTCTACATTGAAGAATTTCTATCCTATTC
TAATGAACAATACAAAAAGGTTTTAGATGACCTGCCAACTATACCGAAAA
CCAAATGCAAATCCACAGACTCGTTAAAGAAACTGTCGAAACCAGAGTTA
TTGAAAGAACTGAAAGTCGTGGATGTGGATTGTAACCAATTAAAAGGTTT
CGTTCATTCATTACTTGATAAGCTGGAAGGTGTTGCTTAACATTGGTTCA
CAAAAAGTGATTTGATTAGTTGGCGAAAACGAATCTTTCGTTTGGAGAAA
TCAAGATATAGAGGGATAGTTAGGCATTCCCTCAAGCTTTTAAAAGTGGC
GTTATGTTCTGATCTAGGCTggcaaaaacatcaaaagaatCTTCATATGA
ACGTCATTATAATGTTAGATGGTGTTCCAGCTGGATAAAAGGTTGCTTTG
GTTGGTTTCGACCCCATTGAATATGCAAGTGTCACAATTGATAGAAAATG
GAAAATCTTCATTTCGTGGATTCGACggattttagtttttatcaGTTAGA
ATTGCAATGACAGAAGAAGTATTCATTTTGGATattcatttttaaaggaa
aagtgACATTTTTGACGTTGcgttttgttcaatatttttcagttttgttg
CGTTCACATGtgcagaaaaaaaagaattttatatTAATGTTTTGTCGTGT
TAAAATTGTACAATTTgtataaaaatgattttttctaagttacgaaaata
atttttctttactacTCTCCCTTTTAATGAAGATTACATTCGTCCATATA
AACAATCTATTGtattattcagaaaaaaacacagcAATGACTTTTATCAA
CTTCCTTGATAAAAAAACGAGGTTACAGACATTCATTCTACAGTGACGAA
AGCCCTACCTACATTCcaatttaaaaattattctttaCAGTGGGTACGAA
AAATGAACGGAAACTTTTTGTTGGTATGAAGTAAAAATCATAGCACATAA
TTGTGTAAATTCGTCCTtcttttttccggacacactgTAGTGATCCCGTT
ACCGGGTTGACTTTTAGTTAGATCCTTCCACAAACATTTTATGAAAATGC
ATTattaatgacaaaaatatttttttcaattttcatttatttctatttct
ttgtactttttctttaaatattactttttagaaatatttttttcatgcat
ttttttattatacAAACAAGACTGAAGAAAGATTAACTACGATGGCCCCG
AAGTTTATCCACTTCtaaaaaaagttctgaaattttcaagaagagaagta
aaaatttaaagaagggAAGTAAATATTTCGAGaagggaagtaaaaatttt
aaaaagggaAGTAAAATGTCTT

Run BLAST on NCBI

protein sequence of TCONS_00052563-protein

>TCONS_00052563-protein ID=TCONS_00052563-protein|Name=TCONS_00052563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
KYFSHLILRQLKEKTKQLGLLKKNQTAEREKQHQLVNESKKVEQEIQQLE
DEKDKRDKRIIMLEDALRESVTIAVEREDLLASHKEMYENAVNKMNSTNS
EYERVELEKKITNIKNAFLILSLSEKDALIASMEATRKRQNEELFNIKQE
TLLASISEKDNQIAHLELQSSKTKKQDIKQLKLEKEKFVEQLKAQNNNRM
TILSNGENENNLLINELESAPPEQVYEAIRHLHNSTSKLEFYIEEFLSYS
NEQYKKVLDDLPTIPKTKCKSTDSLKKLSKPELLKELKVVDVDCNQLKGF
VHSLLDKLEGVA

Run BLAST on NCBI

transcript from alignment at scaffold_218:208889..212826+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052563 ID=TCONS_00052563|Name=TCONS_00052563|organism=Clytia hemisphaerica|type=transcript|length=3938bp|location=Sequence derived from alignment at scaffold_218:208889..212826+ (Clytia hemisphaerica)
gaaatatttctcTCATTTGATTCTCAGACAATTGAAAGAGAAGACGAAAC
AACTTGGTTTGTTGAAGAAGAATCAAACAGCTGAGCGAGAAAAACAACAT
CAGCTCGTCAACGAgtccaaaaaagttgaacaagAAATACAACAGCTGGA
GGTATAACTTATTTCTTTTAGAGTACTGCGACGTACAGACAACGCAACAC
GTGAGCCTTGTCAAGCTAAACAAAATCCGTTGAGACTCAATTTGTTACGT
TATGCTTTTATGTAATTGAGTTacaaaataaatgtattttttataatttg
agaTCTATTGAAATTTGATCAACTAAGGCTCAACATGAATGTGTtgtatg
cttttttcaacatttgagCCTGGCTATGGTTCTAAGTTTCATGCTTACTG
CTTGCTGTACCCTTACTAGTTACTTCGCTCAACATGAATGTGTtgtatgc
ttttttcaacatttgagCCTGGTTATGGTTCTAAGTTTCATGCTTACTGC
TTGCTGTACCCTTACTAGTTACTTCGCAATACCAGAAATTATGGCTCGTT
TACAGTAGTTTCGATGCAATCATTTTCAAACTGTTGGTACTAAATTGAAA
TTGTCATATTTTTTGAATCACTTGGTTGACTTGTTTAACCATGCAAATTC
ACTTTTGTATAATCTCCAATAGGACGAAAAAGATAAGCGAGACAAACGTA
TCATCATGTTAGAAGATGCATTACGTGAAAGCGTCACTATAGCTGTTGAA
CGTGAAGATCTTCTGGCAAGTCACAAAGAAATGTACGAAAACGCTGTCAA
TAAGATGAACTCAACCAATAGCGAATATGAGAGAGTTGAACTGGAAAAGA
AAATCACAAACATCAAGAATGCGTTTCTTATTTTATCTCTCAGTGAGAAA
GACGCACTGATTGCATCGATGGAAGCGACCAGGAAAAGACAGAACGAAGA
ACTGTTTAATATCAAGTATGTCTATATTATACACCTTTAAGTCTTACGCC
TCTGCCGGTGATCGGGCTCAAGATTACGTGGGTTGAATAATGTCAAATGT
TTTTATcctcaatgcaatgacttcaatcCTTATCTCTAACCCCCTCTCAT
GCAGCTTTTAGAAGCAAGAATTGATTGATGTATTGTATAAATTCCAGTCT
TTGGTTTAAGGAACGACCCTCTACCAAACCGGGGAAATACAAGGTTATGG
TGTGAAGAATTTATGATTAAAAGTTTTAACTGAAATTCAAGCTCGTTCAT
GCATTCAAACTTTCCACCTGTACTTAACTTATTGCCTTTCTTTCAGACAA
GAAACCTTACTAGCATCTATTAGTGAGAAAGACAATCAAATCGCACACTT
GGAATTACAATCGTCAAAAACCAAGAAACAAGATATCAAAcaattgaaac
ttgaaaaagaaaaattcgttGAACAATTAAAAGCACAGGTAAAGCTTTGA
CCACCATTCAAATATTTGAGCAGTACCTTCCTACTATCACCTATCTTCAC
CTAAATCGCACTAATGAGCCTCACGAAGtaacaaaaaacacaaatcatTA
GAGGATACAAGCAGCCTAACAATCATCATTTATTTACCATTACTTTATGG
AATTGATCATCCGAAATTCCTAGGTTTTAACTGAAATATCTAAGTCTTAA
CCTTAGTAAGCTTATAGACATGACCTCTTTTTCCTCTCTTCTACAGAATA
ACAATCGAATGACGATCTTAAGTAACggtgaaaatgagaacaatCTGTTA
ATCAACGAACTTGAAAGTGCTCCGCCAGAACAGGTACAATATCTTGCAAT
TCTTTTGCTGTTCTTTTTTGACTTCTCATATCAACACATTATACTTATGT
TGTTCAATCAAGCTGaatcttttattttaaaagGGTAAAAAACATCTCCC
AGGGTCGGGTTTTTCTTATCAGTGAGTCAAAAAAAGCCAGCAATGCTAGA
AGGTATTTCAGTCGCTCTAAGGGTCatctttttttagcaaaaaatcgtCT
CCCTAAGGAGACCCAGAATCCCCAAAATCTAGTACCCCGGGGTCTAATCT
TTGAACCActcttttttttgtgttttcatGGACTATAAACCGAACTTATC
TTTTGATAACCAACAGTTTCACTTTACGTTCTTCCATCTTCAGGTTTACG
AAGCTATCCGTCATCTCCACAATAGTACAAGTAAACTAGAGTTCTACATT
GAAGAATTTCTATCCTATTCTAATGAACAATACAAAAAGGTTTTAGATGA
CCTGCCAACTATACCGAAAACCAAATGCAAATCCACAGACTCGTTAAAGA
AACTGTCGAAACCAGAGGTACGATTTGATCCGATTTAGTTTTGGTTTTTT
TAAGTGGTGACACCGATGTTTTCACGGAGGCTTTCCTTGGTCTTACCATG
TTTTCTTTCACTCGTCCAATTGAGGGGAGAAAGGTCAGGCATTCGTATTT
TATCTTCAACCATCTGGTTCTGGAAAACAAGcttcaaactttaaaatatg
AAGATTCTTGAATCAAAtcagttttctttttaaagaaaccGTGACATATC
TAGGGGTTCGTTTAGGTGCTGTTAGACTTAAAATATCCATTAAGTTTATT
TATATCTGACCTCTCAGTTTCATACTCACTAATTTCCATTTTCACTTTTA
GTTATTGAAAGAACTGAAAGTCGTGGATGTGGATTGTAACCAATTAAAAG
GTTTCGTTCATTCATTACTTGATAAGCTGGAAGGTGTTGCTTAACATTGG
TTCACAAAAAGTGATTTGATTAGTTGGCGAAAACGAATCTTTCGTTTGGA
GAAATCAAGATATAGAGGGATAGTTAGGCATTCCCTCAAGCTTTTAAAAG
TGGCGTTATGTTCTGATCTAGGCTggcaaaaacatcaaaagaatCTTCAT
ATGAACGTCATTATAATGTTAGATGGTGTTCCAGCTGGATAAAAGGTTGC
TTTGGTTGGTTTCGACCNAAATTTATAATGTTAGATGGTGTTCCAGCTGG
ATTAAAGGTTGCTTTGGTTGGTTTCGACCCCATTGAATATGCAAGTGTCA
CAATTGATAGAAAATGGAAAATCTTCATTTCGTGGATTCGACggatttta
gtttttatcaGTTAGAATTGCAATGACAGAAGAAGTATTCATTTTGGATa
ttcatttttaaaggaaaagtgACATTTTTGACGTTGcgttttgttcaata
tttttcagttttgttgCGTTCACATGtgcagaaaaaaaagaattttatat
TAATGTTTTGTCGTGTTAAAATTGTACAATTTgtataaaaatgatttttt
ctaagttacgaaaataatttttctttactacTCTCCCTTTTAATGAAGAT
TACATTCGTCCATATAAACAATCTATTGtattattcagaaaaaaacacag
cAATGACTTTTATCAACTTCCTTGATAAAAAAACGAGGTTACAGACATTC
ATTCTACAGTGACGAAAGCCCTACCTACATTCcaatttaaaaattattct
ttaCAGTGGGTACGAAAAATGAACGGAAACTTTTTGTTGGTATGAAGTAA
AAATCATAGCACATAATTGTGTAAATTCGTCCTtcttttttccggacaca
ctgTAGTGATCCCGTTACCGGGTTGACTTTTAGTTAGATCCTTCCACAAA
CATTTTATGAAAATGCATTattaatgacaaaaatatttttttcaattttc
atttatttctatttctttgtactttttctttaaatattactttttagaaa
tatttttttcatgcatttttttattatacAAACAAGACTGAAGAAAGATT
AACTACGATGGCCCCGAAGTTTATCCACTTCtaaaaaaagttctgaaatt
ttcaagaagagaagtaaaaatttaaagaagggAAGTAAATATTTCGAGaa
gggaagtaaaaattttaaaaagggaAGTAAAATGTCTT

Coding sequence (CDS) from alignment at scaffold_218:208889..212826+

>TCONS_00052563 ID=TCONS_00052563|Name=TCONS_00052563|organism=Clytia hemisphaerica|type=CDS|length=5634bp|location=Sequence derived from alignment at scaffold_218:208889..212826+ (Clytia hemisphaerica)
aaatatttctcTCATTTGATTCTCAGACAATTGAAAGAGAAGACGAAACA
ACTTGGTTTGTTGAAGAAGAATCAAACAGCTGAGCGAGAAAAACAACATC
AGCTCGTCAACGAgtccaaaaaagttgaacaagAAATACAACAGCTGGAG
GACGAAAAAGATAAGCGAGACAAACGTATCATCATGTTAGAAGATGCATT
ACGTGAAAGCGTCACTATAGCTGTTGAACGTGAAGATCTTCTGGCAAGTC
ACAAAGAAATGTACGAAAACGCTGTCAATAAGATGAACTCAACCAATAGC
GAATATGAGAGAGTTGAACTGGAAAAGAAAATCACAAACATCAAGAATGC
GTTTCTTATTTTATCTCTCAGTGAGAAAGACGCACTGATTGCATCGATGG
AAGCGACCAGGAAAAGACAGAACGAAGAACTGTTTAATATCAAACAAGAA
ACCTTACTAGCATCTATTAGTGAGAAAGACAATCAAATCGCACACTTGGA
ATTACAATCGTCAAAAACCAAGAAACAAGATATCAAAcaattgaaacttg
aaaaagaaaaattcgttGAACAATTAAAAGCACAGAATAACAATCGAATG
ACGATCTTAAGTAACggtgaaaatgagaacaatCTGTTAATCAACGAACT
TGAAAGTGCTCCGCCAGAACAGGTTTACGAAGCTATCCGTCATCTCCACA
ATAGTACAAGTAAACTAGAGTTCTACATTGAAGAATTTCTATCCTATTCT
AATGAACAATACAAAAAGGTTTTAGATGACCTGCCAACTATACCGAAAAC
CAAATGCAAATCCACAGACTCGTTAAAGAAACTGTCGAAACCAGAGTTAT
TGAAAGAACTGAAAGTCGTGGATGTGGATTGTAACCAATTAAAAGGTTTC
GTTCATTCATTACTTGATAAGCTGGAAGGTGTTGCTTAAaaatatttctc
TCATTTGATTCTCAGACAATTGAAAGAGAAGACGAAACAACTTGGTTTGT
TGAAGAAGAATCAAACAGCTGAGCGAGAAAAACAACATCAGCTCGTCAAC
GAgtccaaaaaagttgaacaagAAATACAACAGCTGGAGGACGAAAAAGA
TAAGCGAGACAAACGTATCATCATGTTAGAAGATGCATTACGTGAAAGCG
TCACTATAGCTGTTGAACGTGAAGATCTTCTGGCAAGTCACAAAGAAATG
TACGAAAACGCTGTCAATAAGATGAACTCAACCAATAGCGAATATGAGAG
AGTTGAACTGGAAAAGAAAATCACAAACATCAAGAATGCGTTTCTTATTT
TATCTCTCAGTGAGAAAGACGCACTGATTGCATCGATGGAAGCGACCAGG
AAAAGACAGAACGAAGAACTGTTTAATATCAAACAAGAAACCTTACTAGC
ATCTATTAGTGAGAAAGACAATCAAATCGCACACTTGGAATTACAATCGT
CAAAAACCAAGAAACAAGATATCAAAcaattgaaacttgaaaaagaaaaa
ttcgttGAACAATTAAAAGCACAGAATAACAATCGAATGACGATCTTAAG
TAACggtgaaaatgagaacaatCTGTTAATCAACGAACTTGAAAGTGCTC
CGCCAGAACAGGTTTACGAAGCTATCCGTCATCTCCACAATAGTACAAGT
AAACTAGAGTTCTACATTGAAGAATTTCTATCCTATTCTAATGAACAATA
CAAAAAGGTTTTAGATGACCTGCCAACTATACCGAAAACCAAATGCAAAT
CCACAGACTCGTTAAAGAAACTGTCGAAACCAGAGTTATTGAAAGAACTG
AAAGTCGTGGATGTGGATTGTAACCAATTAAAAGGTTTCGTTCATTCATT
ACTTGATAAGCTGGAAGGTGTTGCTTAAaaatatttctcTCATTTGATTC
TCAGACAATTGAAAGAGAAGACGAAACAACTTGGTTTGTTGAAGAAGAAT
CAAACAGCTGAGCGAGAAAAACAACATCAGCTCGTCAACGAgtccaaaaa
agttgaacaagAAATACAACAGCTGGAGGACGAAAAAGATAAGCGAGACA
AACGTATCATCATGTTAGAAGATGCATTACGTGAAAGCGTCACTATAGCT
GTTGAACGTGAAGATCTTCTGGCAAGTCACAAAGAAATGTACGAAAACGC
TGTCAATAAGATGAACTCAACCAATAGCGAATATGAGAGAGTTGAACTGG
AAAAGAAAATCACAAACATCAAGAATGCGTTTCTTATTTTATCTCTCAGT
GAGAAAGACGCACTGATTGCATCGATGGAAGCGACCAGGAAAAGACAGAA
CGAAGAACTGTTTAATATCAAACAAGAAACCTTACTAGCATCTATTAGTG
AGAAAGACAATCAAATCGCACACTTGGAATTACAATCGTCAAAAACCAAG
AAACAAGATATCAAAcaattgaaacttgaaaaagaaaaattcgttGAACA
ATTAAAAGCACAGAATAACAATCGAATGACGATCTTAAGTAACggtgaaa
atgagaacaatCTGTTAATCAACGAACTTGAAAGTGCTCCGCCAGAACAG
GTTTACGAAGCTATCCGTCATCTCCACAATAGTACAAGTAAACTAGAGTT
CTACATTGAAGAATTTCTATCCTATTCTAATGAACAATACAAAAAGGTTT
TAGATGACCTGCCAACTATACCGAAAACCAAATGCAAATCCACAGACTCG
TTAAAGAAACTGTCGAAACCAGAGTTATTGAAAGAACTGAAAGTCGTGGA
TGTGGATTGTAACCAATTAAAAGGTTTCGTTCATTCATTACTTGATAAGC
TGGAAGGTGTTGCTTAAaaatatttctcTCATTTGATTCTCAGACAATTG
AAAGAGAAGACGAAACAACTTGGTTTGTTGAAGAAGAATCAAACAGCTGA
GCGAGAAAAACAACATCAGCTCGTCAACGAgtccaaaaaagttgaacaag
AAATACAACAGCTGGAGGACGAAAAAGATAAGCGAGACAAACGTATCATC
ATGTTAGAAGATGCATTACGTGAAAGCGTCACTATAGCTGTTGAACGTGA
AGATCTTCTGGCAAGTCACAAAGAAATGTACGAAAACGCTGTCAATAAGA
TGAACTCAACCAATAGCGAATATGAGAGAGTTGAACTGGAAAAGAAAATC
ACAAACATCAAGAATGCGTTTCTTATTTTATCTCTCAGTGAGAAAGACGC
ACTGATTGCATCGATGGAAGCGACCAGGAAAAGACAGAACGAAGAACTGT
TTAATATCAAACAAGAAACCTTACTAGCATCTATTAGTGAGAAAGACAAT
CAAATCGCACACTTGGAATTACAATCGTCAAAAACCAAGAAACAAGATAT
CAAAcaattgaaacttgaaaaagaaaaattcgttGAACAATTAAAAGCAC
AGAATAACAATCGAATGACGATCTTAAGTAACggtgaaaatgagaacaat
CTGTTAATCAACGAACTTGAAAGTGCTCCGCCAGAACAGGTTTACGAAGC
TATCCGTCATCTCCACAATAGTACAAGTAAACTAGAGTTCTACATTGAAG
AATTTCTATCCTATTCTAATGAACAATACAAAAAGGTTTTAGATGACCTG
CCAACTATACCGAAAACCAAATGCAAATCCACAGACTCGTTAAAGAAACT
GTCGAAACCAGAGTTATTGAAAGAACTGAAAGTCGTGGATGTGGATTGTA
ACCAATTAAAAGGTTTCGTTCATTCATTACTTGATAAGCTGGAAGGTGTT
GCTTAAaaatatttctcTCATTTGATTCTCAGACAATTGAAAGAGAAGAC
GAAACAACTTGGTTTGTTGAAGAAGAATCAAACAGCTGAGCGAGAAAAAC
AACATCAGCTCGTCAACGAgtccaaaaaagttgaacaagAAATACAACAG
CTGGAGGACGAAAAAGATAAGCGAGACAAACGTATCATCATGTTAGAAGA
TGCATTACGTGAAAGCGTCACTATAGCTGTTGAACGTGAAGATCTTCTGG
CAAGTCACAAAGAAATGTACGAAAACGCTGTCAATAAGATGAACTCAACC
AATAGCGAATATGAGAGAGTTGAACTGGAAAAGAAAATCACAAACATCAA
GAATGCGTTTCTTATTTTATCTCTCAGTGAGAAAGACGCACTGATTGCAT
CGATGGAAGCGACCAGGAAAAGACAGAACGAAGAACTGTTTAATATCAAA
CAAGAAACCTTACTAGCATCTATTAGTGAGAAAGACAATCAAATCGCACA
CTTGGAATTACAATCGTCAAAAACCAAGAAACAAGATATCAAAcaattga
aacttgaaaaagaaaaattcgttGAACAATTAAAAGCACAGAATAACAAT
CGAATGACGATCTTAAGTAACggtgaaaatgagaacaatCTGTTAATCAA
CGAACTTGAAAGTGCTCCGCCAGAACAGGTTTACGAAGCTATCCGTCATC
TCCACAATAGTACAAGTAAACTAGAGTTCTACATTGAAGAATTTCTATCC
TATTCTAATGAACAATACAAAAAGGTTTTAGATGACCTGCCAACTATACC
GAAAACCAAATGCAAATCCACAGACTCGTTAAAGAAACTGTCGAAACCAG
AGTTATTGAAAGAACTGAAAGTCGTGGATGTGGATTGTAACCAATTAAAA
GGTTTCGTTCATTCATTACTTGATAAGCTGGAAGGTGTTGCTTAAaaata
tttctcTCATTTGATTCTCAGACAATTGAAAGAGAAGACGAAACAACTTG
GTTTGTTGAAGAAGAATCAAACAGCTGAGCGAGAAAAACAACATCAGCTC
GTCAACGAgtccaaaaaagttgaacaagAAATACAACAGCTGGAGGACGA
AAAAGATAAGCGAGACAAACGTATCATCATGTTAGAAGATGCATTACGTG
AAAGCGTCACTATAGCTGTTGAACGTGAAGATCTTCTGGCAAGTCACAAA
GAAATGTACGAAAACGCTGTCAATAAGATGAACTCAACCAATAGCGAATA
TGAGAGAGTTGAACTGGAAAAGAAAATCACAAACATCAAGAATGCGTTTC
TTATTTTATCTCTCAGTGAGAAAGACGCACTGATTGCATCGATGGAAGCG
ACCAGGAAAAGACAGAACGAAGAACTGTTTAATATCAAACAAGAAACCTT
ACTAGCATCTATTAGTGAGAAAGACAATCAAATCGCACACTTGGAATTAC
AATCGTCAAAAACCAAGAAACAAGATATCAAAcaattgaaacttgaaaaa
gaaaaattcgttGAACAATTAAAAGCACAGAATAACAATCGAATGACGAT
CTTAAGTAACggtgaaaatgagaacaatCTGTTAATCAACGAACTTGAAA
GTGCTCCGCCAGAACAGGTTTACGAAGCTATCCGTCATCTCCACAATAGT
ACAAGTAAACTAGAGTTCTACATTGAAGAATTTCTATCCTATTCTAATGA
ACAATACAAAAAGGTTTTAGATGACCTGCCAACTATACCGAAAACCAAAT
GCAAATCCACAGACTCGTTAAAGAAACTGTCGAAACCAGAGTTATTGAAA
GAACTGAAAGTCGTGGATGTGGATTGTAACCAATTAAAAGGTTTCGTTCA
TTCATTACTTGATAAGCTGGAAGGTGTTGCTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033242	XLOC_033242	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00052563-protein	TCONS_00052563-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_218	supercontig	scaffold_218:208889..212826 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.4446	12.4763	10.5972	9.72475	16.2463	11.9722	10.4005	9.76115	5.55242	7.27024	7.11929	6.2526	15.5654	14.2445	12.6085	9.92183	20.4572	18.2866	18.2394	19.9735	24.9564	24.5074	17.0124	20.806	14.5575	16.7148	38.5155	30.4471	23.231	29.3931

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019323	ELKS/CAST

Vocabulary: **Cellular Component**
Term	Definition
GO:0048786	presynaptic active zone

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0048786	presynaptic active zone

Blast

[Close]

BLAST of TCONS_00052563 vs. Swiss-Prot (Human)
Match: RB6I2 (ELKS/Rab6-interacting/CAST family member 1 OS=Homo sapiens GN=ERC1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.623e-25
Identity = 92/268 (34.33%), Postives = 151/268 (56.34%), Query Frame = 2

Query:   26 RQLKEKTKQLGLLKKNQTAEREKQHQLVNESKKVEQEI----QQLEDEKDKRDKRIIMLEDALRESVTIAVEREDLLASHKEMYENAVNKMNSTNSEYERVELEKKITNIKNAFLILSLSEKDALIASMEATRKRQNEELFNIKQETLLASISEKDNQIAHLELQSSKTKKQ-DIKQLKLEKEKFVEQLKAQNNNRMTXXXXXXX----XXXXXXXXXXXAPPEQVYEAIRHLHNSTSKLEFYIEEFLSYSNEQYKKVLDDLPTIPKT 802
            RQ+K++ K++  LK  +  E++K  Q++ E+++ E  +    QQL+D   K+D RI  LE+ALRESV I  ERE +LA  +    NA  ++       E+V+ E +    K +    SL+EK+  + ++ A R++  EE+  +KQE LLA+ISEKD  IA LEL SSK K Q ++  LK EK++ V+QLK Q  NRM ++++       +++          P+Q+ + +  L  + SKL+ YI    +  +++   +L  L T P +
Sbjct:  784 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTNHKPSPDQIIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLILRGL-TPPAS 1050

The following BLAST results are available for this feature:

BLAST of TCONS_00052563 vs. Swiss-Prot (Human)

BLAST of TCONS_00052563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RB6I2	3.623e-25	34.33	ELKS/Rab6-interacting/CAST family member 1 OS=Homo...	[more]

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TCONS_00052563 (transcript) - C. hemisphaerica