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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052589 ID=TCONS_00052589|Name=TCONS_00052589|organism=Clytia hemisphaerica|type=transcript|length=322bp
CTTCCACGAGTATCgaaagagcttttcaaaaatatgtcgATGGGACTTTA
GCAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAG
AGTACAATTCCAATACAACGAAAAGGAAggctcaaaacaaacaaaaatta
tttcacagaAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAgat
gattttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGATCGCGTT
TACTCTTTCAACTTCCATTTCATCTTTGGGAACGTAAAGCTTCTATGGAT
GATATATATTAATAATTACTCC Run BLAST on NCBI transcript from alignment at scaffold_218:488841..491380+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052589 ID=TCONS_00052589|Name=TCONS_00052589|organism=Clytia hemisphaerica|type=transcript|length=2540bp|location=Sequence derived from alignment at scaffold_218:488841..491380+ (Clytia hemisphaerica)
CTTCCACGAGTATCgaaagagcttttcaaaaatatgtcgATGGGACTTTA
GCAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAG
AGTACAATTCCAATACAACGAAAAGGAAggctcaaaacaaacaaaaatta
tttcacagaAATTGACCGATTTCAGTTTCGACGTTTCACAATCTCTAgat
gattttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGTATAATCT
TTCTGttgaaattttcgattttcaatgATCTTTATTATTGCAAAAAGCTC
AATAAGAGGATATAAgtcatattttccaaaattaggtGCCCGCTAATCCT
TTAACCAAATATATTCCAGACTAAAAATATACATCATTTTTTTCCTTCAG
GATCGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACGTAAGTCA
ATACAGTTGATGCCCTCTGATTCGGCATTCtgttattcgataagctccca
ttATCAATCAACTAACAGTCATTTGACAAATTTCCTTTTAATTTCTCATA
AAAGATTTTTATCGGGCATTCTATCGCTATCATCTCCCTGGGGTTGTGGT
ATTTTAAGATTCatgatttacgatgcacgattcacGATCCATGTTCCATG
CATAAATTATGCTGATTTATGCGTAATCATGCTAACCATGATATTTTGGC
AATTTACAAAGTTTCATTCGCAGAAACCAACGACAAACTCAATTAgtttt
acttacttactttaggCATCCACTTGGGGTGACATGAATTAGTTTTAATT
AGTTTTATAATTAGTTTTAAAAGCATGATTCATGttagattatacaaatt
atattcaACGAAGCTTTCATCGCATTCTCCCGTCTGTACCATGATCctta
aaagaaaagtaaagcaCGTGCAGACACTTTCTGCGCTCTCTTTGTTCATA
tctgttgtttacttcgtacattagaGTCCGCAAACCATGTTGCTGAATAT
TGCTCATCAGTATGTTGTGTAGTCTACGTAAAAGCCTTGATTAGTTGTAG
CTTTATTGCTTACTTATTAGTTTTTACATAAATTTGCCGTCGTAAACAAA
AACGAGAAAATATTACGCCATTGTTTTGGAAAATGttacataatttaagt
tttatgtaAATACTTCATGCATGGATCGCGAATCGtacatcgtaaatcgt
taggtCGTCCATCTCAAATTGCACCAACCCGTCTCCCTGGAAGAGTTTTG
ATTTCTAGCATATGAAAGGGTTTTTGGAATAGATTGTGAATTTTAGACGA
TCCTATCATCAACACAATGTCACAACAAAaggaataccttatcggccctt
tttacgccgccCCTTATTACGCCATAGCCTAATGTTGGGCTTACGCCATt
tagggccgttaataacgccaaaatttataaaaatggctacttatgcCTCG
AATTAAtaaataatgactaaaatttacatttaaatgtcattttcagtagt
aaactgttgaaaatttcatcgaaaattactgatttttaaatataatattt
cactgaagttttaaatatggagtaaaacaatggataattttcatcTTCGA
ATCAcacctaaaatcttttaaattgagaaataataataaaaaattaacgc
cgtttttaggtaaaaaattcaaaatcttggcccttttacgccggcccttt
taacaccggtcgttattacgccacgagaccaaaaataacgccaataaggg
ccggtgtaaaaagggccgataacgTAATTCGGGAGGCAGATGAATTTGAA
AACGGAGTTTAGTTCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGTTCGCAA
TGGAATGTAATATTCCAATCttcataatttttgtttttgctgttCTGAAA
GGTAAAGCTTCTATGGATGATATATATTAATAATTACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052589-exon-scaffold_218-1491911889:488841..489081 | TCONS_00052589-exon-scaffold_218-1491911889:488841..489081 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1510915933:488841..489081 | TCONS_00052589-exon-scaffold_218-1510915933:488841..489081 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1575043694:488841..489081 | TCONS_00052589-exon-scaffold_218-1575043694:488841..489081 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1491911889:489241..489282 | TCONS_00052589-exon-scaffold_218-1491911889:489241..489282 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1510915933:489241..489282 | TCONS_00052589-exon-scaffold_218-1510915933:489241..489282 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1575043694:489241..489282 | TCONS_00052589-exon-scaffold_218-1575043694:489241..489282 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1491911889:491342..491380 | TCONS_00052589-exon-scaffold_218-1491911889:491342..491380 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1510915933:491342..491380 | TCONS_00052589-exon-scaffold_218-1510915933:491342..491380 | Clytia hemisphaerica | exon |
| TCONS_00052589-exon-scaffold_218-1575043694:491342..491380 | TCONS_00052589-exon-scaffold_218-1575043694:491342..491380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:488841..491380 + |
Blast
The following BLAST results are available for this feature:
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