TCONS_00052591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052591
Unique NameTCONS_00052591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052591 ID=TCONS_00052591|Name=TCONS_00052591|organism=Clytia hemisphaerica|type=transcript|length=283bp
ACTAGGCTCATCAGGATTGGAAGTTGAAATGATCTCAGCATATTCAAAAT
CAGATGGGGCAGTAAAACAGGGTTCATGGAAATCTTTTGGTGCAGTTTTT
GAACTCTCCTTTGAGAGATAGCAGTCGTATGATTCTCTTTGGTAATCAAC
AGATTTGCATTCTGATTCAGCTTCACATTttacttggcaatccttcaaaT
TGAATTGGTTCTCCAAAACGCGCATGTTTTGATGTCCTGACATGCACGCC
ATCTTTTTTGGTCCCCAGTCTTTTTTCAATACT
Run BLAST on NCBI

transcript from alignment at scaffold_218:536869..537203+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052591 ID=TCONS_00052591|Name=TCONS_00052591|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at scaffold_218:536869..537203+ (Clytia hemisphaerica)
ACTAGGCTCATCAGGATTGGAAGTTGAAATGATCTCAGCATATTCAAAAT
CAGATGGGGCAGTAAAACAGGGTTCATGGAAATCTTTTGGTGCAGTTTTT
GAACTCTCCTTTGAGAGATAGCAGTCGTATGATTCTCTTTGGTAATCAAC
AGATTTGCATTCTGATTCAGCTTCACATTTTGCTTGGCAATCCTTCAAAT
TGAATTGGTTCTCCAAAANCAGCTTCACATTttacttggcaatccttcaa
aTTGAATTGGTTCTCCAAAACGCGCATGTTTTGATGTCCTGACATGCACG
CCATCTTTTTTGGTCCCCAGTCTTTTTTCAATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033249XLOC_033249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052591-exon-scaffold_218-1491911889:536869..537044TCONS_00052591-exon-scaffold_218-1491911889:536869..537044Clytia hemisphaericaexon
TCONS_00052591-exon-scaffold_218-1510915933:536869..537044TCONS_00052591-exon-scaffold_218-1510915933:536869..537044Clytia hemisphaericaexon
TCONS_00052591-exon-scaffold_218-1575043694:536869..537044TCONS_00052591-exon-scaffold_218-1575043694:536869..537044Clytia hemisphaericaexon
TCONS_00052591-exon-scaffold_218-1491911889:537097..537203TCONS_00052591-exon-scaffold_218-1491911889:537097..537203Clytia hemisphaericaexon
TCONS_00052591-exon-scaffold_218-1510915933:537097..537203TCONS_00052591-exon-scaffold_218-1510915933:537097..537203Clytia hemisphaericaexon
TCONS_00052591-exon-scaffold_218-1575043694:537097..537203TCONS_00052591-exon-scaffold_218-1575043694:537097..537203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:536869..537203 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0675429	4.79438	0	0	0	0	0.58802	0	0	0	0	0	9.33319	6.30417	0	0	0	0	39.0277	59.3433	0	0	1.99572	0.976999	0	0	2.63206	1.3067	0	1.09863
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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