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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052595 ID=TCONS_00052595|Name=TCONS_00052595|organism=Clytia hemisphaerica|type=transcript|length=1235bp
CCCAAACCTTTGGTAGTTTCTACTTGTCATCGACGATACCGCTTGTGTTT
AATTTGCAGACCAAGATTCTAGGAATTTTCGGTTTGAGATTCATAATTTC
GAAGTGGATTGGCGTCATTGATGCAAATAATCACCAGGTCCGTGAAATAG
AAACAACCGGATCATCAATGACAACTAAAATTCGCAAAATAACTTGAGTC
TTTTTAACTTTAAAGTTCGAGAGTACTGACTGGGTAGCTCATCGACTGTC
ACAAATCCCCTTGCACCTCAAGCATCATGGCTAATAACAGATTGGTACTC
CGCCGCCGGCTTTCATACAACACCAGATCCAATAGCCGAAGAGTGTAAGT
ATTTTGACTCATTTTTCAAGGTACTCATCTTCTTAATGGAATAAGAATTT
TCACTAACCATGCATCTAGGATTTCATCTTAGAAAGCCAGTAATTTCATA
TGAAGAATGGATACTTTCAGACAaatttgaacatatttttacGGGGGACA
GTGCATGTCGTGTctcttgttgaaaagataactttATGAATTGAAATTGC
TGGTAATTGAGAAATAACTATTTCAATGACATGGCAACATAGTTACGGCA
TGTGAACATAGTTATACCATATGCCATGTGGAAAATATGATGATAATAAT
CACAACAGAACATTGCATTGGGTGTACGTACACAGAGGCCTGTTGACTAC
AGTCAATAAAGTACTATTACTGATATTTTTTGATTGGATATGATCAATCG
TTTAACAGCTGTCAGCATGGTTGATTGATGTTGAAGTAGCATaactttca
aaatcaaatatAGATGGAATTCTTCAAATTATGGCACATAAATCGACAAG
ATGAAATTTGTTTAGAAAAACAATCGTTAACTTAAGACTATGATCACCAA
GGAGGTTCTTTTTTAAACTTCTATCGTTCAATGGCAGTTTTTTAAGATTT
GGATTTTGTTGTTGTGGATGGAATCGGATATTTTTGTAAATCATCACAAG
TGATTTGATATTGTTGAttacaccttatcggaaattccacaaaaacaatT
GCGCTAAAATGGATCCATTGAAATTAggaggtaaacataaatggGACCAA
TGGCAGCGCGAGTAGCGCTCAAAGTTCCCGCGTAAAACAAGCAAAACTCA
TTTGCTTATATCTGGCTTGTTTAtatgttcctaaaaatacactgaatttg
aaaaaaacaaacaaaacaaagctttcaagatgcta Run BLAST on NCBI transcript from alignment at scaffold_218:605183..606520+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052595 ID=TCONS_00052595|Name=TCONS_00052595|organism=Clytia hemisphaerica|type=transcript|length=1338bp|location=Sequence derived from alignment at scaffold_218:605183..606520+ (Clytia hemisphaerica)
CCCAAACCTTTGGTAGTTTCTACTTGTCATCGACGATACCGCTTGTGTTT
AATTTGCAGACCAAGATTCTAGGAATTTTCGGTTTGAGATTCATAATTTC
GAAGTGGATTGGCGTCATTGATGCAAATAATCACCAGGTCCGTGAAATAG
AAACAACCGGATCATCAATGACAACTAAAATTCGCAAAATAACTTGAGTC
TTTTTAACTTTAAAGTTCGAGAGTACTGACTGGGTAGCTCATCGACTGTC
ACAAATCCCCTTGCACCTCAAGCATCGTACGTCCTTTCGTTTATACTGTT
ACTGTAAATTGTTCTCTGATGTTTTATTTTGCCTTTGGTTGCATTAGTTT
TGCTAAATCTGTCTTTTCTACACTTTTAGATGGCTAATAACAGATTGGTA
CTCCGCCGCCGGCTTTCATACAACACCAGATCCAATAGCCGAAGAGTGTA
AGTATTTTGACTCATTTTTCAAGGTACTCATCTTCTTAATGGAATAAGAA
TTTTCACTAACCATGCATCTAGGATTTCATCTTAGAAAGCCAGTAATTTC
ATATGAAGAATGGATACTTTCAGACAaatttgaacatatttttacGGGGG
ACAGTGCATGTCGTGTctcttgttgaaaagataactttATGAATTGAAAT
TGCTGGTAATTGAGAAATAACTATTTCAATGACATGGCAACATAGTTACG
GCATGTGAACATAGTTATACCATATGCCATGTGGAAAATATGATGATAAT
AATCACAACAGAACATTGCATTGGGTGTACGTACACAGAGGCCTGTTGAC
TACAGTCAATAAAGTACTATTACTGATATTTTTTGATTGGATATGATCAA
TCGTTTAACAGCTGTCAGCATGGTTGATTGATGTTGAAGTAGCATaactt
tcaaaatcaaatatAGATGGAATTCTTCAAATTATGGCACATAAATCGAC
AAGATGAAATTTGTTTAGAAAAACAATCGTTAACTTAAGACTATGATCAC
CAAGGAGGTTCTTTTTTAAACTTCTATCGTTCAATGGCAGTTTTTTAAGA
TTTGGATTTTGTTGTTGTGGATGGAATCGGATATTTTTGTAAATCATCAC
AAGTGATTTGATATTGTTGAttacaccttatcggaaattccacaaaaaca
atTGCGCTAAAATGGATCCATTGAAATTAggaggtaaacataaatggGAC
CAATGGCAGCGCGAGTAGCGCTCAAAGTTCCCGCGTAAAACAAGCAAAAC
TCATTTGCTTATATCTGGCTTGTTTAtatgttcctaaaaatacactgaat
ttgaaaaaaacaaacaaaacaaagctttcaagatgcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052595-exon-scaffold_218-1491911889:605183..605458 | TCONS_00052595-exon-scaffold_218-1491911889:605183..605458 | Clytia hemisphaerica | exon |
| TCONS_00052595-exon-scaffold_218-1510915933:605183..605458 | TCONS_00052595-exon-scaffold_218-1510915933:605183..605458 | Clytia hemisphaerica | exon |
| TCONS_00052595-exon-scaffold_218-1575043694:605183..605458 | TCONS_00052595-exon-scaffold_218-1575043694:605183..605458 | Clytia hemisphaerica | exon |
| TCONS_00052595-exon-scaffold_218-1491911889:605562..606520 | TCONS_00052595-exon-scaffold_218-1491911889:605562..606520 | Clytia hemisphaerica | exon |
| TCONS_00052595-exon-scaffold_218-1510915933:605562..606520 | TCONS_00052595-exon-scaffold_218-1510915933:605562..606520 | Clytia hemisphaerica | exon |
| TCONS_00052595-exon-scaffold_218-1575043694:605562..606520 | TCONS_00052595-exon-scaffold_218-1575043694:605562..606520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:605183..606520 + |
Blast
The following BLAST results are available for this feature:
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