TCONS_00052625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052625
Unique NameTCONS_00052625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052625 ID=TCONS_00052625|Name=TCONS_00052625|organism=Clytia hemisphaerica|type=transcript|length=1731bp
TTCAGCATAACTAATACATAATACGAAAGATATACAATGAATGAAATGGG
AGGTTACGATGTGGAGTTTCTCCACGAACAATTTGATGACATGAAATGTT
CAATTTGTCTTTTGGTTTTACGAGAACCCATGCAAGCTGATGAGTGTGGT
CATCGATTTTGCAAGTCTTGCCTTGTTAACATTAGGAAGAGtGGCGAGAA
AAAATATACGTGTCCTCAGGATCGGACCAAAATACGGGTCTTCAGGGACA
AGGGTCGTGAACGAGAAATTTTGAATCGTTTTGTAAAATGTATTCACCAC
AAAGAAGGATGTTGTTGGGCTAAAGCATTGAGAGAACTTGAGAATCACAA
GAAGGTATGTGATTTCGAGGAAATTGTATGCCCTTTCAACGATTGTGGAG
ATAGATTTCAAAGGAGGTTCTTGGCCAAACACAACAAAGAAGATTGTTTA
TACAGAACGATGCTGTGTCCATTTTGCGACGAAGAGTATTCTTTTCACCT
AGAACAggagCATATCGTAGAATGCGTCTATTTGCCAATTTGTTGTGATT
ATTGTCAAGCTCAAGAAATTCCAAGATACAAGaTGGAGACTCACTTAATC
CAGAAATGTGCTAAAGCGCCAAGAGAATGTGATTTTGCAAATTTGGGCTG
CGAAAAACGGATGCTGATGTATGACATTGCTAAGCATAACACAAATTTTT
CTGACCACCACATTAATCTAGCTCTACAGAAAATTTCTGctaaagaaaat
attattatgGAAATGGGCCAAGATCTTGAAAGGGTACAGAGTTATAATAT
AAACCTACGACAAGATATTGAAGAATTACGGAACGATAATGTTAACCTAA
ACAAACAGGTTGCATCCCAAGCAGAAGAGATTCAACGGTTGAAAACTGAC
CTCCAAAAAGCCAAATCCTTGAATTCAGACCAGAATATTTCGAAGATAAC
GGGATCAACCAACAAAAGTTCAGCTTTTAATGCGCAATGGCAAGCATTTA
ATCAAAGAATAGCAAATGGCCAAAGACAAGCTGCAATGACTCAAAGTTCA
GCTTCAATGGCTCAAACAGCTGCCTTTGCTCCAATACCAACTTCATCAGC
TGAATCAACTTCGATGCTTCGAAGACCATTTTCGTTAGCTCAAATACCAA
CACGTTTGAATTTCACAAATTTCTCACGTGCAAATAAACACACTTGGCGC
GTTCACAATTTTTCAGTTGAAGTCTCCAAAGCCATTGGTATGAATTCATT
GATGCCGATAAGCAAATCATTCTATACTTCACTTGGATATCGCATCAAAG
TTGACCTTTATCCAAACTTAAATAAATTCGTCGCAATTTATTCTGCAACC
ATGGTTGGTTGTTACGACTCAAATTTGAAATGGCCAATGGAAAAATCTCA
ATTAGGTCTTCACGTATTGGGTCAGGAAGATGGAAAGCAATATGTGAGCA
GTTTCCATATCGAAACTTCGACTTGTCAGGCATTCCGAAAACCACCACAC
CTGGTTGTCCCCTTCGGTTGCGAAACCTTTCTGTCACATAATGATTTTGG
AAAAGCCATCAATAATGATATACTTACAATCGTTTTCGATATGGTTCAAC
AATAACTCATTTCTTGATGGTCTGGATTCTGTTAGTTTGATTCCTGTTTA
TTTGAAAGTATCGTATGAGAAATTCCGTCCTAGtgaaattataaaattat
agaATATGACtatatgaaaaatgattaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_218:708884..711727+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052625 ID=TCONS_00052625|Name=TCONS_00052625|organism=Clytia hemisphaerica|type=transcript|length=2844bp|location=Sequence derived from alignment at scaffold_218:708884..711727+ (Clytia hemisphaerica)
TTCAGCATAACTAATACATAATACGAAAGATATACAATGAATGAAATGGG
AGGTTACGATGTGGAGTTTCTCCACGAACAATTTGATGACATGAAATGTT
CAATTTGTCTTTTGGTTTTACGAGAACCCATGCAAGCTGATGAGTGTGGT
CATCGATTTTGCAAGTCTTGCCTTGTTAACATTAGGAAGAGGTAACTATT
GATGCAAATTGTGAATAGGATGAATCTAAATAAACAAATCGATggaaatc
ttcatttttatagcGAGATTAACACAGCTACAACAGCGAATAATTTTTAT
GGATATAGTCCTGACAAGACGAGGAATTCATCTTTCTTCTTAATTGTTGC
TGAGGTCCACTTATCAGGAACCCTTATCATATAAGTTACACTAAGTATTG
GACTTTCACAAAGAATTTCGTTCTTTTCCATCTTTGATGCGTGTATTTGA
TCTTTAATggtattttgttatttttcagtGGCGAGAAAAAATATACGTGT
CCTCAGGATCGGACCAAAATACGGGTAAGTGCGAATCACGTGACAATCTa
tttttctgttattttgaaataattgtcCAGTCATATTTTACCGAAGTCGC
TTGTGAGTGATTCCAAAGGAGAACAATCATTTTGTCACTCTTTCAATGTC
TTAGTATATTAAAATTTTACGATACTTGGTTTTCCTTATGCAGGTCTTCA
GGGACAAGGGTCGTGAACGAGAAATTTTGAATCGTTTTGTAAAATGTATT
CACCACAAAGAAGGATGTTGTTGGGCTAAAGCATTGAGAGAACTTGAGGT
GAGACGAACTACCTTACTTACTACCAAATAAATTTATTAGAAAATGCCTG
CCCCCTCCTCCCATTTTTGTCTGTCCAAGTATAACTCTTCTGAGTGACAT
AGCACTATTTTCCAACGAAAAGTCAGGGttttaattttgacatttttctt
tactgtttcttTTGTTATAGAATCACAAGAAGGTATGTGATTTCGAGGAA
ATTGTATGCCCTTTCAACGATTGTGGAGATAGATTTCAAAGGAGGTTCTT
GGCCAAACACAACAAAGAAGATTGTTTATACAGAACGATGCTGTGTCCAT
TTTGCGACGAAGAGTATTCTTTTCACCTAGAACAggtaattttgttgaaa
attgttAAATTTACCTTCCTGTTCTTTGTTTTATGTTTAATTATGTACaa
cttactttttttttcaggagCATATCGTAGAATGCGTCTATTTGCCAATT
TGTTGTGATTATTGTCAAGCTCAAGAAATTCCAAGATACAAGGTTTTATA
acgttattatttttttcctcaaTATATTAGTTAGAGCTTACCGCAATAAC
TGCTGTTCTAAATTTTATGTtcgattaaaatttttttatcatttcagaTG
GAGACTCACTTAATCCAGAAATGTGCTAAAGCGCCAAGAGAATGTGATTT
TGCAAATTTGGGCTGCGAAAAACGGGTTTATTTTACCTCATATTTAATTC
TTATTGAAGACTGGCTTATCCTTACAGAGGATGTCCGGTTCTGTGTAGAG
CGATTTAGAAGTCGCCCCGTTAGAACCGTCTTACGCTGTAGTTTATACTG
TCTGCCAATTTGGCGAGACTGACACACAGTTTTTTGGATCAAGTGAATAA
CAGCACCGAATGAGAATCGAATGAAATTCTAATTAAGTTGTTTGTAAGTC
ACGATGTTGTGTATTGTGTTATACGATGTCTACTCCTCATTCTAAATCTA
TCCTTGTTTTCCTTTGTATTTAGATGCTGATGTATGACATTGCTAAGCAT
AACACAAATTTTTCTGACCACCACATTAATCTAGCTCTACAGAAAATTTC
TGctaaagaaaatattattatgGAAATGGGCCAAGATCTTGAAAGGGTAC
AGAGTTATAATATAAACCTACGACAAGATATTGAAGAATTACGGAACGAT
AATGTTAACCTAAACAAACAGGTTGCATCCCAAGCAGAAGAGATTCAACG
GTTGAAAACTGACCTCCAAAAAGCCAAATCCTTGAATTCAGACCAGAATA
TTTCGAAGATAACGGGATCAACCAACAAAAGTTCAGCTTTTAATGCGCAA
TGGCAAGCATTTAATCAAAGAATAGCAAATGGCCAAAGACAAGCTGCAAT
GACTCAAAGTTCAGCTTCAATGGCTCAAACAGCTGCCTTTGCTCCAATAC
CAACTTCATCAGCTGAATCAACTTCGATGCTTCGAAGACCATTTTCGTTA
GCTCAAATACCAACACGTTTGAATTTCACAAATTTCTCACGTGCAAATAA
ACACACTTGGCGCGTTCACAATTTTTCAGTTGAAGTCTCCAAAGCCATTG
GTATGAATTCATTGATGCCGATAAGCAAATCATTCTATACTTCACTTGGA
TATCGCATCAAAGTTGACCTTTATCCAAACTTAAATAAATTCGTCGCAAT
TTATTCTGCAACCATGGTTGGTTGTTACGACTCAAATTTGAAATGGCCAA
TGGAAAAATCTCAATTAGGTCTTCACGTATTGGGTCAGGAAGATGGAAAG
CAATATGTGAGCAGTTTCCATATCGAAACTTCGACTTGTCAGGCATTCCG
AAAACCACCACACCTGGTTGTCCCCTTCGGTTGCGAAACCTTTCTGTCAC
ATAATGATTTTGGAAAAGCCATCAATAATGATATACTTACAATCGTTTTC
GATATGGTTCAACAATAACTCATTTCTTGATGGTCTGGATTCTGTTAGTT
TGATTCCTGTTTATTTGAAAGTATCGTATGAGAAATTCCGTCCTAGtgaa
attataaaattatagaATATGACtatatgaaaaatgattaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033261XLOC_033261Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052625-exon-scaffold_218-1491911889:708884..709074TCONS_00052625-exon-scaffold_218-1491911889:708884..709074Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1510915933:708884..709074TCONS_00052625-exon-scaffold_218-1510915933:708884..709074Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1575043694:708884..709074TCONS_00052625-exon-scaffold_218-1575043694:708884..709074Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1491911889:709362..709407TCONS_00052625-exon-scaffold_218-1491911889:709362..709407Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1510915933:709362..709407TCONS_00052625-exon-scaffold_218-1510915933:709362..709407Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1575043694:709362..709407TCONS_00052625-exon-scaffold_218-1575043694:709362..709407Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1491911889:709577..709681TCONS_00052625-exon-scaffold_218-1491911889:709577..709681Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1510915933:709577..709681TCONS_00052625-exon-scaffold_218-1510915933:709577..709681Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1575043694:709577..709681TCONS_00052625-exon-scaffold_218-1575043694:709577..709681Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1491911889:709854..710018TCONS_00052625-exon-scaffold_218-1491911889:709854..710018Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1510915933:709854..710018TCONS_00052625-exon-scaffold_218-1510915933:709854..710018Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1575043694:709854..710018TCONS_00052625-exon-scaffold_218-1575043694:709854..710018Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1491911889:710101..710175TCONS_00052625-exon-scaffold_218-1491911889:710101..710175Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1510915933:710101..710175TCONS_00052625-exon-scaffold_218-1510915933:710101..710175Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1575043694:710101..710175TCONS_00052625-exon-scaffold_218-1575043694:710101..710175Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1491911889:710281..710358TCONS_00052625-exon-scaffold_218-1491911889:710281..710358Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1510915933:710281..710358TCONS_00052625-exon-scaffold_218-1510915933:710281..710358Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1575043694:710281..710358TCONS_00052625-exon-scaffold_218-1575043694:710281..710358Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1491911889:710657..711727TCONS_00052625-exon-scaffold_218-1491911889:710657..711727Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1510915933:710657..711727TCONS_00052625-exon-scaffold_218-1510915933:710657..711727Clytia hemisphaericaexon
TCONS_00052625-exon-scaffold_218-1575043694:710657..711727TCONS_00052625-exon-scaffold_218-1575043694:710657..711727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:708884..711727 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.463	12.8017	2.93285	1.71483	0	0.320144	0.575978	1.12204	1.23339	0.397665	0.67559	0.899055	0.59052	0.692767	2.13232	2.46082	1.16907	2.4454	0.2675	0	1.8522	1.25188	27.1337	20.5808	4.43894	4.042	1.85529	2.30649	12.7478	17.173
Blast
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BLAST of TCONS_00052625 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.556e-36
Identity = 128/510 (25.10%), Postives = 220/510 (43.14%), Query Frame = 1 
Query:   43 EMGGYDVEFLHEQFDDMKCSICLLVLREPMQADECGHRFCKSCLVNIRKSGEKKYT-CPQDRTKIRVFRDKGREREILNRFVKCIHHKEGCCWAKALRELENH-KKVCDFEEIVCPFNDCGDRFQRRFLAKHNKEDCLYRTMLCPFCDEEYSFHLEQEH-IVECVYLPICCDY-CQAQEIPRYKMETHLIQKCAKAPRECDFANLGCEKRMLMYDIAKHNTNFSDHHINLALQ-------KISAKENIIMEMGQDLERVQ----SYNINLRQDIEELRNDN---VNLNKQVASQAEEIQRLKTDLQKAKSLNSDQNISKITGSTNKSSAFNAQWQAFNQRIANGQRXXXXXXXXXXXXXXXXFAPIPTSSAESTSMLR-RPFSLAQIPTRLNFTNFSRANK-HTWRVHNFSVEVSKAIGMNSLMPISKSFYTS-LGYRIKVDLYPNLNKF-----VAIYSATMVGCYDSNLKWPMEKSQLGLHVLGQEDGKQYVSSFHIETSTCQAFRKP 1494
            E GGY  +F+    D  KC  C LVL  P Q  ECGHRFC+SC+  +  S   K T C +   K +VF+D   +REIL   + C +   GC     L  L  H K  C FEE+ C   DC ++  R+ L  H ++ C YR   C  C  +      Q+H   +C  + + C + C  Q + R ++  HL  +C  AP  C F   GC  +     I  H  + +  H+NL  +       K+S  +N  +E  + ++ +     S+ I + +  E LRN+    ++L + + SQAE+++ L            D+ I     +  ++ +  +  ++   R+   +         A          + +  +    ML      LA +  R      +  N    W++ ++     +A+   +L   S+ FYT   GY++   +Y N +       ++++   M G YD+ L WP  K ++ L ++ Q   ++++           +F+KP
Sbjct:   35 EQGGYKEKFVKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFKDNCCKREILALQIYCRNESRGCAEQLMLGHLLVHLKNDCHFEELPCVRPDCKEKVLRKDLRDHVEKACKYREATCSHCKSQVPMIALQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHL-SECVNAPSTCSFKRYGCVFQGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLKEL------------DKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNT-----GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPF-KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKP 524
The following BLAST results are available for this feature:
BLAST of TCONS_00052625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF31.556e-3625.10TNF receptor-associated factor 3 OS=Homo sapiens G... [more]
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