TCONS_00052630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052630
Unique NameTCONS_00052630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052630 ID=TCONS_00052630|Name=TCONS_00052630|organism=Clytia hemisphaerica|type=transcript|length=1546bp
atagagaaaaataaaaaaaacaaagtagaaaaaataagaaaagcaaCAAT
AAATAATGGTGGAGAAGATGTTGTCAGGTGGTTACGATGTTGAATTTGCC
ACTGTTTACCCTGAAGACAACGTAACTTGTGCAATATGTTTATTTATCCT
GCGAGAACCGATGCAAGCTATCGAATGTGGGCAcagattttgtaaaagct
gcGTAGCTGATTTGAAGAAAGGTGATAATGGAAAGCACATGTGTCCCGAA
GACAGGAGTGAGATGAATctttttcCCGACAAAGGTAAAGAGCGAGAAAT
TTTAGGAAGAGCAGTGAAGTGCACTAATGTTCGAAATGGTTGTTCTTCTG
TTCAAGAACTGCGCAATCTGGAGGATCACAAAGAACAATGCGACTTTAAA
ATCGTTAAATGTGTCGTTGAATCGTGTGCTGAGGAGTTTCAAAGGCGATA
CGAAGATCAGCACtacaaaaagtgcaaatacagaATGGTTCAATGCCCAT
TTTGCAACGAAGATTATATTTCCGCTTTTGAGGAGGAACACATCGAGGAT
TGTGAAGAATTTTTGGAATGTTGTGATTTTTGTGACACCGTTGGTATACC
AAGATCGAAGATGAACGACCATCTCACGAAAGCTTGTAAAAAGATTCCAC
ATTCATGTAAATTCGCTTCAATTGGTTGCCAAGAAAAGATGATCCTGGAT
AAACTGCGTAGTCATCAATCCATTGCAACTGAACATCACCTTAATTTAGC
TTTGGACAAAATCTGTGAACAGCAAGATGAAATAATATCTTTGCGAAATT
CGCAAACGAAGTTCTCCAATTTATTTAATCAGAGAGTAGGTCTTTCACTA
AAGGAAAATCATGTTTGGACAATATtaggttttgatgaaaaacttaGATT
GGCGAAACAACAATCTGATTATCTTGAATTAACGGAGGACTTTTACACGT
CGCAAGGATACAAGTTAAATTGTTGCCTTGAATCTTCAAGACCTTTCACA
CCTGATAACGATGATTCAAAAAGACGTTGGTTTGCTTTATATTTCTGCAC
CATAGAAGGCAATTTCGATGAGATTTTAAAATGGCCCCTTGTAATGAGTA
TCGAACCTTCAATCGGAAACGATGAGAGAGACCTATTGACTTTAACGACT
GAATTTCCGAAAAGTTTCGCAAAACCTCCGCATGGAGAAGGTGGTTATGG
CTATAAACAGTTTACATCAGAAGCTCAAATTATGAATGTCATAACCGACG
GTACACTTACtataaacattaaaacaaaacaattatagATAAGAAGagga
gaaaataatttttgaaaagtcaaacattttttgatgtttgCTAAATCTTG
GAAGTTATCAAAAGTGGATTCGATATTCATTCCATCAATATAATAGACGA
TAATTTGACGTATGCACTTTGTTAAAATGTGTCCTTCGAGGACCCATGCA
GGCTGTCGAATGTGGTTTTGGAAGAATTGTATATCGCAGTTGAAGAAAGG
AttataattttcaataaatttcgaAGATATTCTTTCAGAGATGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_218:718448..722353+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052630 ID=TCONS_00052630|Name=TCONS_00052630|organism=Clytia hemisphaerica|type=transcript|length=3906bp|location=Sequence derived from alignment at scaffold_218:718448..722353+ (Clytia hemisphaerica)
atagagaaaaataaaaaaaacaaagtagaaaaaataagaaaagcaaCAAT
AAATAATGGTGGAGAAGATGTTGTCAGGTGGTTACGATGTTGAATTTGCC
ACTGTTTACCCTGAAGACAACGTAACTTGTGCAATATGTTTATTTATCCT
GCGAGAACCGATGCAAGCTATCGAATGTGGGCAcagattttgtaaaagct
gcGTAGCTGATTTGAAGAAAGGGTAATAACTGATGTTGTTTTAGTGATTA
ACTTTTGAATTAGGAAAACATACCGGTCATGCTACTTAAACATGGTTTAC
AGGCTTTTTATGCTGGTTGCTTTAGAATGTCTCAGTTTGATAGATTTTCT
AAAAGTTTCTTCTGTATTGCTCTTTAACTTTTAATTTTCATGCGTTTTTC
TTTCAGTGATAATGGAAAGCACATGTGTCCCGAAGACAGGAGTGAGATGA
ATGtaaggtttttttcttttctccaaTTTGAAACCATGGCTGTTCTTTAC
CGGGTGAAGAGATAGCGGAGTGTCGTCCTTTAGATAGACCGATCACGTCc
cttgaatatttttgtcatatttttgtCCGTTTAGCAAAGAAGGAGAACTT
CAGATTCGCGTTAAGGGAACGATCACAAAATTCACATCCAATCCATAAAG
TTTGCAAATTCAATATTTGTCCGTAAAAAGACTGAAATTGGGCAAACATA
CTCTAGTAGTAGTGGTCGCAAATTCTGGACTATTTTTATGATGTTTCTGC
ATAGAAGATTACGGTATACAATTAAAATGATTATAATGAAATCCcacggg
ggtactagggttgcaagctgacggggggtgccgcccgactttcgaacttt
ggacccttaccgggactaaaaaggagaaaacaaaggNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTCCGGAA
TGAAATATAACGTAATGAAACTTCTACTATAGACCCTTTCTACTATAGAA
ATTTTCTCTACTACACAATTATCACTAACGTCtcttttctcaactttttt
ctttagctttttcCCGACAAAGGTAAAGAGCGAGAAATTTTAGGAAGAGC
AGTGAAGTGCACTAATGTTCGAAATGGTTGTTCTTCTGTTCAAGAACTGC
GCAATCTGGAGGTGATATATTTCACTTTTCAACTgtcaacatttgaaaaa
taattgaataaaaaCCGATTATAAAGCTATAGACCCTTTGAAGTTCCGAT
CATGACGTTGATTACATCATTGATTACCTTAATTCAATTTTACATAGGAT
CACAAAGAACAATGCGACTTTAAAATCGTTAAATGTGTCGTTGAATCGTG
TGCTGAGGAGTTTCAAAGGCGATACGAAGATCAGCACtacaaaaagtgca
aatacagaATGGTTCAATGCCCATTTTGCAACGAAGATTATATTTCCGCT
TTTGAGGAGGTTTGTTCGTAATGTTtcttaattttgtttttgtatttttc
cttGGTGCAAAGGATGGatgcaatttttgtgtttcgTTTTTCGAAACTCT
GTTAGCTAGCCATACAGTGACCATAAAGATGAATTGTAAATGGCCCCATA
ACTCAGAAAAGAACGATTAAAAGGAATTCCCTCTCCTTACTTGATTTAAT
TCAGGTTTAATGTTTTTCAGGAACACATCGAGGATTGTGAAGAATTTTTG
GAATGTTGTGATTTTTGTGACACCGTTGGTATACCAAGATCGAAGGTTAA
GTTTTGAAATTGATTCAGCCAATCTATCTAGATTTAGCTAACTGTTAATT
GGGTATTAATTGgcgtttttattattttcatataCATGAAATCAACAGTA
GTTATTCTCAATTGAGTGAGAAGGTGTGTTTGAAATCGCTTATGATCGCC
GTTGCCAAATCTTTTCTGGAACACCTTGCAAAATGTGTGTATGTGTGTTT
CAGCAAATAACAAAGTTATCAAGGAATCTAAGACGCATAAAACCCTTTCT
AGATGAACGACCATCTCACGAAAGCTTGTAAAAAGATTCCACATTCATGT
AAATTCGCTTCAATTGGTTGCCAAGAAAAGGTAACTtattttcttaagaa
agtgATTAAAGAAACTGTATAAGAAGAAACATATCAAGGTCCTTAAATGT
CACATCACTGAATTCTCAAAGCATTTTTACCGTGATTTCATTTATGGTAG
AGAAATTTCCATCGACAATCACATGTGTGTTTCCTAGGGTAAATTCGGAT
CTCTGTGGCACTTTTAGCCGAATAGAAAATATTATAGTGTCAAAAGTTCT
TCTGTCCAGACGTATTTTTCAATAACATGTGCTGATTTTCCGTGTAAAAC
TCAGTTTCCGTCTCagatgaaaaatatattgttgcTGAGATTAAGTTTGT
AAAGATTAATAGTAAATATGTAATTTAACTCTCTAATTCGCTTACTAGAT
GATCCTGGATAAACTGCGTAGTCATCAATCCATTGCAACTGAACATCACC
TTAATTTAGCTTTGGACAAAATCTGTGAACAGCAAGATGAAATAATATCT
TTGCGAAATTCGCAAACGAAGTTCTCCAATTTATTTAATCAGAGAGTAGG
TCTTTCACTAAAGGAAAATCATGTTTGGACAATATtaggttttgatgaaa
aacttaGATTGGCGAAACAACAATCTGATTATCTTGAATTAACGGAGGAC
TTTTACACGTCGCAAGGATACAAGTTAAATTGTTGCCTTGAATCTTCAAG
ACCTTTCACACCTGATAACGATGATTCAAAAAGACGTTGGTTTGCTTTAT
ATTTCTGCACCATAGAAGGCAATTTCGATGAGATTTTAAAATGGCCCCTT
GTAATGAGTATCGAACCTTCAATCGGAAACGATGAGAGAGACCTATTGAC
TTTAACGACTGAATTTCCGAAAAGTTTCGCAAAACCTCCGCATGGAGAAG
GTGGTTATGGCTATAAACAGTTTACATCAGAAGCTCAAATTATGAATGTC
ATAACCGACGGTACACTTACtataaacattaaaacaaaacaattatagAT
AAGAAGaggagaaaataatttttgaaaagtcaaacattttttgatgtttg
CTAAATCTTGGAAGTTATCAAAAGTGGATTCGATATTCATTCCATCAATA
TAATAGACGATAATTTGACGTATGCACTTTGTTAAAATGTGTCCTTCGAG
GACCCATGCAGGCTGTCGAATGTGGTTTTGGAAGAATTGTATATCGCAGT
TGAAGAAAGGAttataattttcaataaatttcgaAGATATTCTTTCAGAG
ATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033263XLOC_033263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052630-exon-scaffold_218-1491911889:718448..718669TCONS_00052630-exon-scaffold_218-1491911889:718448..718669Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1510915933:718448..718669TCONS_00052630-exon-scaffold_218-1510915933:718448..718669Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1575043694:718448..718669TCONS_00052630-exon-scaffold_218-1575043694:718448..718669Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1491911889:718854..718899TCONS_00052630-exon-scaffold_218-1491911889:718854..718899Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1510915933:718854..718899TCONS_00052630-exon-scaffold_218-1510915933:718854..718899Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1575043694:718854..718899TCONS_00052630-exon-scaffold_218-1575043694:718854..718899Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1491911889:720104..720208TCONS_00052630-exon-scaffold_218-1491911889:720104..720208Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1510915933:720104..720208TCONS_00052630-exon-scaffold_218-1510915933:720104..720208Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1575043694:720104..720208TCONS_00052630-exon-scaffold_218-1575043694:720104..720208Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1491911889:720345..720506TCONS_00052630-exon-scaffold_218-1491911889:720345..720506Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1510915933:720345..720506TCONS_00052630-exon-scaffold_218-1510915933:720345..720506Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1575043694:720345..720506TCONS_00052630-exon-scaffold_218-1575043694:720345..720506Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1491911889:720718..720792TCONS_00052630-exon-scaffold_218-1491911889:720718..720792Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1510915933:720718..720792TCONS_00052630-exon-scaffold_218-1510915933:720718..720792Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1575043694:720718..720792TCONS_00052630-exon-scaffold_218-1575043694:720718..720792Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1491911889:721050..721127TCONS_00052630-exon-scaffold_218-1491911889:721050..721127Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1510915933:721050..721127TCONS_00052630-exon-scaffold_218-1510915933:721050..721127Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1575043694:721050..721127TCONS_00052630-exon-scaffold_218-1575043694:721050..721127Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1491911889:721496..722353TCONS_00052630-exon-scaffold_218-1491911889:721496..722353Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1510915933:721496..722353TCONS_00052630-exon-scaffold_218-1510915933:721496..722353Clytia hemisphaericaexon
TCONS_00052630-exon-scaffold_218-1575043694:721496..722353TCONS_00052630-exon-scaffold_218-1575043694:721496..722353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:718448..722353 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.70804	8.33618	4.68048	3.62133	0.168662	0.0565546	0.196064	0.682451	0.358544	0.219353	0.295722	0.357552	0.899096	0.975658	0.914454	1.39757	0.313423	0.71564	0.350371	0.705552	0.531585	0.612256	7.24023	6.93479	0.96056	1.29418	0.61141	0.605975	2.51444	4.90888
Blast
[Close]
BLAST of TCONS_00052630 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.800e-32
Identity = 127/459 (27.67%), Postives = 188/459 (40.96%), Query Frame = 2 
Query:   80 GYDVEFATVYPEDNVTCAICLFILREPMQAIECGHRFCKSCVADLKKGDNGKHMCPEDRS---EMNLFPDKGKEREILGRAVKCTNVRNGCSSVQELRNLEDHKEQCDFKIVKCVVESCAEEFQRRYEDQH-YKKCKYRMVQCPFCNEDYISAFXXXXXXXXXXXXXXXXXXXTVGIPRSKMNDHLTKACKKIPHSCKFASIGCQEKMILDKLRSHQSIATEHHLNLALD-----KICEQQDEIISLRNSQTKFSNLFNQRVGLSLKENH------------------------------------------VWTILGFDEKLRLAKQQSDYLELTEDFYTSQ-GYKLNCCLESSRPFTPDNDDSKRRWFALYFCTIEGNFDEILKWPLVMSI--------EPSIGNDERDLLTLTTEFPKSFAKP--PHGEGGYGYKQFTSEAQI--MNVITDGTLTI 1264
            GYDVEF     E    C ICL  LRE +Q   CGHRFCK+C+  +K   +  H CP D     E  LFPD   +REIL   VKC N   GC    ELR+LEDH+  C+F ++ C    C   FQ+ + + H  K C  R V C  C        +E H ++C      C++C+T+ I R +M +H    C   P  C F++ GC EKM  + L  H    T+ H+ +         +      I  +RN    F    +Q  G  ++++H                                          +W I  F   L+  +++   +  +  FYT + GYKL   L    P           + +L+  T++G +D  L WP   +I        E  +  +  +++    E   +F +P  P    G+GY  F     +     I D TL +
Sbjct:   55 GYDVEFDPPL-ESKYECPICLMALREAVQT-PCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRN----FQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLP----TAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPEL-LAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLV 495
The following BLAST results are available for this feature:
BLAST of TCONS_00052630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF63.800e-3227.67TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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