TCONS_00052652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052652
Unique NameTCONS_00052652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052652 ID=TCONS_00052652|Name=TCONS_00052652|organism=Clytia hemisphaerica|type=transcript|length=696bp
ttNCAACACAACTTCGATGTACGAAAATCAAACTGCTGATTGTTATTATT
TCTGCAGAACGCCAGAAGATTGCACTTTCGATGACGGCTATTGTAGTAAT
TTTACCATGTTTGAAACTCCGAATGACGAACCGCGACGTTGGCTGCTTGA
TACTGATCTAACAAGTACTGCAAACACTGGCCCTGCAGCACCTCAGCAAG
GTACTCATTATGCCTACTTTGAAAGTTCATACGACGTAAATAGTGTGCCG
TATTATGATGATATCAAGAACGACGTAGACAAAACTGAAAGCTTTTCCAT
GAGTAATATTCCAGGGAAATATCTATGCATTGGATTTTACTATTATTCAT
GGGCGGAATCAGCAACTGACAACGTTGGTGGTACCATGGGCTTCcttaaa
gtgactgaaaataaTAATGTAATATTGAACCATAACCGTGTCGATCAAAG
CTGGAAACTTGCGTTATACAATACTACAGCTTCTGCGCCATTTACGctcA
CCTTTGAAGGACAAGCATTGACTCGATATTCTGATCATGCTATTGACGAT
CTTCGATTTTATGAAGTTGACTGTGGAACATATGTAAGTATCATATATTA
CAGCTGATCATCTACAGAATAATTTTATATTCCTACATTGAACCAAACTT
TGCGAAAAACTCAAATATTTCTTACATTTCAAACCATTTTATCGCG
Run BLAST on NCBI

protein sequence of TCONS_00052652-protein

>TCONS_00052652-protein ID=TCONS_00052652-protein|Name=TCONS_00052652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
XNTTSMYENQTADCYYFCRTPEDCTFDDGYCSNFTMFETPNDEPRRWLLD
TDLTSTANTGPAAPQQGTHYAYFESSYDVNSVPYYDDIKNDVDKTESFSM
SNIPGKYLCIGFYYYSWAESATDNVGGTMGFLKVTENNNVILNHNRVDQS
WKLALYNTTASAPFTLTFEGQALTRYSDHAIDDLRFYEVDCGTYVSIIYY
S
Run BLAST on NCBI

transcript from alignment at scaffold_218:34194..35896-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052652 ID=TCONS_00052652|Name=TCONS_00052652|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at scaffold_218:34194..35896- (Clytia hemisphaerica)
TTNCAACACAACTTCGATGTACGAAAATCAAACTGCTGATTGTTATTATT
TCTGCAGAAGTAAGTTTCCCTCATGTTCCACTTTTTTGTTTGTTTATATT
ATAATCAGATCTACAGTGTCCCAAAAAAGTATACTAATAAAGTAAGGTAG
TTGACTGAACCAGTAACTTTAATTTTTAGTTTAGCTGAAAGCATAGCTGC
TCAGCTCTCAATTATTACGATCTACTTCAGAAGGTTTTACTCCAGAGTTA
TCAAGTCTTACACAAGGGTGCAACTTTTTAACATTGAAGATGGAATGAGT
TATTCCAAAATAATCTAACTCAACTAACGTTAATTTGCAAAAGGTAGAAA
TGTCCAAGAAGTTGATTTTATATGCAACAGAAAGAAAAAAATTCATATTC
CTTCCATTGCTGAAAGAATAATATTCAAACAGCTTTTCATTGAGGAGACA
TTGACTTTGATTAACTTTTTGCTTTGAAAGTTTTTCATCTGGACTATTTT
AAATCTCCAACTCTAAAGTTTAAGTTGATTGACCTTAACGTTTTTTCATA
ATTCGATTTTACTTTTTTGCGGAACACACTGTATTAAGAAAGATAATATA
ATCTGCTGATTTTTTATTGTGCAATAAAGAAGTTTATTGAAAAGCAAACA
AAAACAAAAAAAAAACACTCTACTTCCATTGTATTTTCAATTTGATTAAA
ATGGATTTGTCATGTTTCTTTCAGCGCCAGAAGATTGCACTTTCGATGAC
GGCTATTGTAGTAATTTTACCATGTTTGAAACTCCGAATGACGAACCGCG
ACGTTGGCTGCTTGATACTGATCTAACAAGTACTGCAAACACTGGCCCTG
CAGCACCTCAGCAAGGTAAGTTTTCATCTTAGAGACATCACTTACATTAC
AAAAAGTTTTTCTTTTGCGAAAACGAAAATGTTCTTGCATGATTTCTAAT
TTATTTCCTGTCTTTCAGGTACTCATTATGCCTACTTTGAAAGTTCATAC
GACGTAAATAGTGTGCCGTATTATGATGATATCAAGAACGACGTAGACAA
AACTGAAAGCTTTTCCATGAGTAATATTCCAGGGAAATATCTATGCATTG
GATTTTACTATTATTCATGGGCGGAATCAGCAACTGACAACGTTGGTGGT
ACCATGGGCTTCCTTAAAGTGACTGAAAATAATAATGTAATATTGAACCA
TAACCGTGTCGATCAAAGCTGGAAACTTGCGTTATACAATACTACAGCTT
CTGCGCCATTTACGGTAATTTTTTCTCCGTTCATCATTTTATGCTTGTAT
TGGATATAAGTAGATCCGGGTTTGGAAAAAGTTTTCTTTGTGTGTTTTGA
CTTTTGATAACTTTCCAATCCAAATATCGATAATTATAGCTACGATAAGC
CCCGTGTTATCTCAGTGTATGCTTTCTAAAGGGTTGATGTTTTCATAAAA
TTATTAGCAGCGTCTTCGGTTTTAAATGAATTTAAATTTTTTTCATTTTT
CAGCTCACCTTTGAAGGACAAGCATTGACTCGATATTCTGATCATGCTAT
TGACGATCTTCGATTTTATGAAGTTGACTGTGGAACATATGTAAGTATCA
TATATTACAGCTGATCATCTACAGAATAATTTTATATTCCTACATTGAAC
CAAACTTTGCGAAAAACTCAAATATTTCTTACATTTCAAACCATTTTATC
GCG

Coding sequence (CDS) from alignment at scaffold_218:34194..35896-

>TCONS_00052652 ID=TCONS_00052652|Name=TCONS_00052652|organism=Clytia hemisphaerica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_218:34194..35896- (Clytia hemisphaerica)
CTCACCTTTGAAGGACAAGCATTGACTCGATATTCTGATCATGCTATTGA
CGATCTTCGATTTTATGAAGTTGACTGTGGAACATATGTAAGTATCATAT
ATTACAGCTGAGTACTCATTATGCCTACTTTGAAAGTTCATACGACGTAA
ATAGTGTGCCGTATTATGATGATATCAAGAACGACGTAGACAAAACTGAA
AGCTTTTCCATGAGTAATATTCCAGGGAAATATCTATGCATTGGATTTTA
CTATTATTCATGGGCGGAATCAGCAACTGACAACGTTGGTGGTACCATGG
GCTTCCTTAAAGTGACTGAAAATAATAATGTAATATTGAACCATAACCGT
GTCGATCAAAGCTGGAAACTTGCGTTATACAATACTACAGCTTCTGCGCC
ATTTACGCGCCAGAAGATTGCACTTTCGATGACGGCTATTGTAGTAATTT
TACCATGTTTGAAACTCCGAATGACGAACCGCGACGTTGGCTGCTTGATA
CTGATCTAACAAGTACTGCAAACACTGGCCCTGCAGCACCTCAGCAAGTN
CAACACAACTTCGATGTACGAAAATCAAACTGCTGATTGTTATTATTTCT
GCAGAACTCACCTTTGAAGGACAAGCATTGACTCGATATTCTGATCATGC
TATTGACGATCTTCGATTTTATGAAGTTGACTGTGGAACATATGTAAGTA
TCATATATTACAGCTGAGTACTCATTATGCCTACTTTGAAAGTTCATACG
ACGTAAATAGTGTGCCGTATTATGATGATATCAAGAACGACGTAGACAAA
ACTGAAAGCTTTTCCATGAGTAATATTCCAGGGAAATATCTATGCATTGG
ATTTTACTATTATTCATGGGCGGAATCAGCAACTGACAACGTTGGTGGTA
CCATGGGCTTCCTTAAAGTGACTGAAAATAATAATGTAATATTGAACCAT
AACCGTGTCGATCAAAGCTGGAAACTTGCGTTATACAATACTACAGCTTC
TGCGCCATTTACGCGCCAGAAGATTGCACTTTCGATGACGGCTATTGTAG
TAATTTTACCATGTTTGAAACTCCGAATGACGAACCGCGACGTTGGCTGC
TTGATACTGATCTAACAAGTACTGCAAACACTGGCCCTGCAGCACCTCAG
CAAGTNCAACACAACTTCGATGTACGAAAATCAAACTGCTGATTGTTATT
ATTTCTGCAGAACTCACCTTTGAAGGACAAGCATTGACTCGATATTCTGA
TCATGCTATTGACGATCTTCGATTTTATGAAGTTGACTGTGGAACATATG
TAAGTATCATATATTACAGCTGAGTACTCATTATGCCTACTTTGAAAGTT
CATACGACGTAAATAGTGTGCCGTATTATGATGATATCAAGAACGACGTA
GACAAAACTGAAAGCTTTTCCATGAGTAATATTCCAGGGAAATATCTATG
CATTGGATTTTACTATTATTCATGGGCGGAATCAGCAACTGACAACGTTG
GTGGTACCATGGGCTTCCTTAAAGTGACTGAAAATAATAATGTAATATTG
AACCATAACCGTGTCGATCAAAGCTGGAAACTTGCGTTATACAATACTAC
AGCTTCTGCGCCATTTACGCGCCAGAAGATTGCACTTTCGATGACGGCTA
TTGTAGTAATTTTACCATGTTTGAAACTCCGAATGACGAACCGCGACGTT
GGCTGCTTGATACTGATCTAACAAGTACTGCAAACACTGGCCCTGCAGCA
CCTCAGCAAGTNCAACACAACTTCGATGTACGAAAATCAAACTGCTGATT
GTTATTATTTCTGCAGAACTCACCTTTGAAGGACAAGCATTGACTCGATA
TTCTGATCATGCTATTGACGATCTTCGATTTTATGAAGTTGACTGTGGAA
CATATGTAAGTATCATATATTACAGCTGAGTACTCATTATGCCTACTTTG
AAAGTTCATACGACGTAAATAGTGTGCCGTATTATGATGATATCAAGAAC
GACGTAGACAAAACTGAAAGCTTTTCCATGAGTAATATTCCAGGGAAATA
TCTATGCATTGGATTTTACTATTATTCATGGGCGGAATCAGCAACTGACA
ACGTTGGTGGTACCATGGGCTTCCTTAAAGTGACTGAAAATAATAATGTA
ATATTGAACCATAACCGTGTCGATCAAAGCTGGAAACTTGCGTTATACAA
TACTACAGCTTCTGCGCCATTTACGCGCCAGAAGATTGCACTTTCGATGA
CGGCTATTGTAGTAATTTTACCATGTTTGAAACTCCGAATGACGAACCGC
GACGTTGGCTGCTTGATACTGATCTAACAAGTACTGCAAACACTGGCCCT
GCAGCACCTCAGCAAGTNCAACACAACTTCGATGTACGAAAATCAAACTG
CTGATTGTTATTATTTCTGCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033269XLOC_033269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052652-exon-scaffold_218-1575043694:35838..35896TCONS_00052652-exon-scaffold_218-1575043694:35838..35896Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1575043694:35032..35172TCONS_00052652-exon-scaffold_218-1575043694:35032..35172Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1575043694:34633..34928TCONS_00052652-exon-scaffold_218-1575043694:34633..34928Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1575043694:34194..34393TCONS_00052652-exon-scaffold_218-1575043694:34194..34393Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1510915933:35838..35896TCONS_00052652-exon-scaffold_218-1510915933:35838..35896Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1510915933:35032..35172TCONS_00052652-exon-scaffold_218-1510915933:35032..35172Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1510915933:34633..34928TCONS_00052652-exon-scaffold_218-1510915933:34633..34928Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1510915933:34194..34393TCONS_00052652-exon-scaffold_218-1510915933:34194..34393Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1491911889:35838..35896TCONS_00052652-exon-scaffold_218-1491911889:35838..35896Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1491911889:35032..35172TCONS_00052652-exon-scaffold_218-1491911889:35032..35172Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1491911889:34633..34928TCONS_00052652-exon-scaffold_218-1491911889:34633..34928Clytia hemisphaericaexon
TCONS_00052652-exon-scaffold_218-1491911889:34194..34393TCONS_00052652-exon-scaffold_218-1491911889:34194..34393Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052652-proteinTCONS_00052652-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:34194..35896 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43393	1.02597	0.747849	0.525336	2.21002	1.72218	3.65448	4.98526	1.99633	4.10121	1.15907	1.89497	147.576	146.397	1.43967	2.74236	1.38853	1.30732	362.356	652.31	1.75982	1.88588	0.792947	1.06487	1.73052	2.79574	1.83528	0.464999	1.03691	0.849197
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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