TCONS_00052657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052657
Unique NameTCONS_00052657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052657 ID=TCONS_00052657|Name=TCONS_00052657|organism=Clytia hemisphaerica|type=transcript|length=218bp
ttttgtttctttcaccACTTTTGTAAGAAAGaaCCAAACATGGAACCTGC
CCGTAATGAAACATTTTCTGTGAAATGGAGCGGAGTGGGAAAATTGCTTG
CAACCTCCCAACCTTCTGAAAGTAATAAAGgtgGCATCCAGTATCTTCAA
GAGTTGAACTTGAAAAATGACTGGCACTCTCCTGTcatgagaaaactttt
gaatgaaGCACACAGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_218:168769..169667-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052657 ID=TCONS_00052657|Name=TCONS_00052657|organism=Clytia hemisphaerica|type=transcript|length=899bp|location=Sequence derived from alignment at scaffold_218:168769..169667- (Clytia hemisphaerica)
TTTTGTTTCTTTCACCACTTTTGTAAGAAAGGTAAGAAAAGGAGTTATTT
TGAAAGCAAATAGAATCAAAACTGCCACTTTACCATCTGTTGGAAAGGAA
AGAAGATCTTGCATTGCTAAAATCTACCATAAGCAAAAGTATTGTGTAAA
ACTATTCTCATGCTTGGAGTATATTAGCCATTGTGTGTAGACAGATAATA
AGTTTTCAATTTCAAAACGCTCTTATTAAAAATGTTCAAAAAAAGATGAA
AGAAAGGCAAAAGATTGACTGATTGAAGATCAATGCAGAAAAGGGGCGAA
AAAGATTTGCTGGGTGCTTAAAAATTGCTAGCAAAAATGCTTGATGCGAG
AATGGGAGAGTTCGGATTTAACAGGATAAGCGTATTATAATATAGAGTAT
AGATTGAATTTCTCAATTTTTCAAAATATCAATTAAAGGACAATGTAAAT
GACAAAATATTTTTCTTTATTTAGAACCAAACATGGAACCTGCCCGTAAT
GAAACATTTTCTGTGAAATGGAGCGGAGTGGGAAAATTGCTTGCAACCTC
CCAACCTTCTGAAAGTAATAAAGGTATAAGATATGTTTCTACTATATTGT
ATTGAAAGCTTTTCAGTGTTAAAAGCTCAATTTCTGCTTTTATTAACTTC
ATTTTAAGTAATTTTTAGATGAATTCATGAATTTGTTTAAGTTTTTATCG
GAAATGAAATCTTTGTCCAACAATACTTCTTTTTCCGTCTTATTAACAAT
ATATTTAAACTCTTTTGATATCTTTATTAAGCTCTATTCTTCTTGCAAAT
TTTTATTTCAGGTGGCATCCAGTATCTTCAAGAGTTGAACTTGAAAAATG
ACTGGCACTCTCCTGTCATGAGAAAACTTTTGAATGAAGCACACAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033272XLOC_033272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052657-exon-scaffold_218-1575043694:169637..169667TCONS_00052657-exon-scaffold_218-1575043694:169637..169667Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1575043694:169095..169193TCONS_00052657-exon-scaffold_218-1575043694:169095..169193Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1575043694:168769..168856TCONS_00052657-exon-scaffold_218-1575043694:168769..168856Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1510915933:169637..169667TCONS_00052657-exon-scaffold_218-1510915933:169637..169667Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1510915933:169095..169193TCONS_00052657-exon-scaffold_218-1510915933:169095..169193Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1510915933:168769..168856TCONS_00052657-exon-scaffold_218-1510915933:168769..168856Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1491911889:169637..169667TCONS_00052657-exon-scaffold_218-1491911889:169637..169667Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1491911889:169095..169193TCONS_00052657-exon-scaffold_218-1491911889:169095..169193Clytia hemisphaericaexon
TCONS_00052657-exon-scaffold_218-1491911889:168769..168856TCONS_00052657-exon-scaffold_218-1491911889:168769..168856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:168769..169667 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.70873	0	4.31795	2.5681	14.8296	0	2.5885	8.68303	17.9064	7.47757	11.8933	13.0834	6.82971	0	9.19315	22.4846	17.8564	17.0813	5.66763	1.63524	3.29054	0	2.2783	4.84759	3.11743	7.36484	0	0	0	1.60991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top