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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052665 ID=TCONS_00052665|Name=TCONS_00052665|organism=Clytia hemisphaerica|type=transcript|length=1865bp
TTCAAGACCTCTGGATGGACAAAAGAAATTCCATAGTCAGAGTGTCAATA
ATAAGAGGACACAGAACAAAAGGAAATGTTACGAATTAGGCTCCTTATAA
ATTTCTGGtttgttgaaacttttttccatttCAACATTAGCCATCTAATC
CTAACTTCTAAGTGTATGTTAATCCATGGTTTTTTGTCCCCTGATTTACA
ATGTTATTCATGGatgattttttgtaatttgtgtgttaaaatttGATAGA
GTTGTTATTAACTGATAGGATTATCCCAATTTTTGATGATTAGTCTGTCT
CTGTAAAACGTCAGGGACTTTAACGGTTGCTACAGTAGTGTGCGTGGGAC
GTCTTAATTTGGTGGAACGTTTTGAGttgcaaatttaaaaaaccaGAATA
AGCTTAGAAGATTTAAATTGAGAATTGTTTTGTGCGCAGATGTGTGCaca
attttgattggttatcTTTACTTACATATTTTCTCAAACGAGATGGTTGC
TTATTTGGACAAACAAAAGAGCAATGATGTGGACGGTTCAGATTGCGGAA
ACATTGATCACCGGATACGACGCCAACGAACACATTTCACGGTCACACAG
CTACAGAAACTGGAATCATTTTTCGCGCGCAATCGATATCCTGATATGGC
GATGAGAGAAGATATCGCTCAATGGTGTTCACTAACTGAATCGAGAGTCA
GAATTTGGTTTAAAAATCGTCGTGCAAAATGGAGAAAGAAAGAACGTCAC
TTGGAACAGCGTCCCGATATGTTCCCCGATTTCAGTTCCCCTTATCGCTT
AGAACCGCCCAGTATCTACGATCGTCGCGTTCCTATGCCTTCGTACACAC
CCACTTATCCAACACATACTCCGCCTTTGATTGGGGCGTCATCATCAAGA
TCTCCGCCCCTACCACACAATTATCAACAATCAAGTCACTCTTGGTATAA
TTCTCCTGATCACTCGGCCAATCATAATTTGTCGGGTCCAGGCCTCTCGC
AACGACACAGTCCACCTTACAACCCGACTGGCGGACTCTATAATTATCAA
GATCCGATTCGGAACAATTATTTATCGACTTGCCCACAACAAACTGTATC
AACACCACAAATCGGGAATAGGGATAATGATTTAGTTTCCCCGATTTCAC
TATCACCTCGCACTCCAACGCACACATTTTCACCTCAAGGAGGTAATTTC
CATATGTGAGATATAAAGATTCgggaattttcaattatttaaacaaaaaa
cgaactaaatttagaattttgacaatttttgatatatttttcagattttt
ttattatattaaacgtaaaaattatatattttcctgTATCATATGTAAAT
GTAATTATACTTAAATATTTTACTTGCATGTTACGCCAAAACAACATACA
CACCTCATATATGTTTATAGTTAGAAAATGATTGGCTTCGTGTTGTTAAG
GAGGGGTTGGGTTGAAATACCAACCCTCTTAGGTATTGTCATCACTGTTT
TTATGGAACAAATCAATCGAATGCAATTTCAAACAACATATGCGAAGTAT
AAGAAGAAGTTTATTAGTATGTGTTGCCTCTTTTGACCTCTTTTTTAACT
TGACTCTTGActtgtgaaaaatatttgagaaattttaaattttacaaaaa
aagctttcCAATTTAAACCCAAAGCAATGAACATCAGGCTAAATTAGATT
AAGGTCTCGAaatgattttatatttttttattctaattaTATATGTAAAA
TGACAACTGCTAATTATTTTAGTTAAACAAATATAAATTGCTACATTCAA
TTGGTTTTTTTCTCCAGTCTGCAAAATTGTCCTATTAAATTTACCTCACA
GTTGCGGAAAGGATA Run BLAST on NCBI transcript from alignment at scaffold_218:311488..314643- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052665 ID=TCONS_00052665|Name=TCONS_00052665|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at scaffold_218:311488..314643- (Clytia hemisphaerica)
TTCAAGACCTCTGGATGGACAAAAGAAATTCCATAGTCAGAGTGTCAATA
ATAAGAGGACACAGAACAAAAGGAAATGTTACGAATTAGGCTCCTTATAA
ATTTCTGGTTTGTTGAAACTTTTTTCCATTTCAACATTAGCCATCTAATC
CTAACTTCTAAGTGTATGTTAATCCATGGTTTTTTGTCCCCTGATTTACA
ATGTTATTCATGGATGATTTTTTGTAATTTGTGTGTTAAAATTTGATAGA
GTTGTTATTAACTGATAGGATTATCCCAATTTTTGATGATTAGTCTGTCT
CTGTAAAACGTCAGGGACTTTAACGGTTGCTACAGTAGTGTGCGTGGGAC
GTCTTAATTTGGTGGAACGTTTTGAGTTGCAAATTTAAAAAACCAGAATA
AGCTTAGAAGATTTAAATTGAGAATTGTTTTGTGCGCAGATGTGTGCACA
ATTTTGATTGGTTATCTTTACTTACATATTTTCTCAAACGAGATGGTTGC
TTATTTGGGTAATTCATATATAATTTCTTTGATACGGGACTATTATTAGG
ACATTATTTTTTAACCAAACTATCGATATTCTTATTTTGAATTTATCATG
ACAGATCAAGTCTTGCCTCAAGGAAACTGTAAAACTGAAAAAAAAATTAT
TCTCCTAAAAAATATTTGCCAAATTTTAAAATTTCCTACAAATATTAAAT
GGGAGTTATAGTTTTTAAGAGTATTATCTTTTCATATCATCTCAAAATTT
GTTTCCTTCAGACAAACAAAAGAGCAATGATGTGGACGGTTCAGATTGCG
GAAACATTGATCACCGGATACGACGCCAACGAACACATTTCACGGTCACA
CAGCTACAGAAACTGGAATCATTTTTCGCGCGCAATCGATATCCTGATAT
GGCGATGAGAGAAGATATCGCTCAATGGTGTTCACTAACTGAATCGAGAG
TCAGAGTAAGTCGATTTTATCGATGTCAAGTCTTGACAGGATAGGTTATG
TAGCTAGTTAATCAAAGTTAGATGCTTGTCCAGCGTTAAATAGAAGTTTG
ATGTTCGTCATAGACCGACGTTCATAATTCATAAAAGACCTTGAAATAGG
TACTCATCTAACGGTATATAGGTGTTAGAATGTTATCGCACGTCACACGG
ACGGTAGATCAGATTAAAGGACACTTTCATCTCCACTAATAACCTTTACA
CGTCTTTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATGTTAC
TTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAACT
TTTTGACATAATTAGTCTTGATTGGAAGGTTCTTATAAAAAACCGAATTA
AAAAATGTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTC
TTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTA
AAAAAAAAAGACGTGTATAGCATTGAGTTGACTTTATATGCTATATTTAT
AGTGCAGTTGTTCTATATTAGAAACTTTTGACAGCAAGTAAAGTCAAAAT
TTGAACACCAAAATAGCTCAAACCAATATAACTGTTACTATTTGACATCT
TAAAAACCACAAAATACTTTATGAGAAAAATAAACTTTTTGACTGAGACT
AAACTCTGTTTGCTCCTTGATTTAGTATGAGTGATACTTCAACATTTTTC
CTTCCGCTAATTTTGGTTTCATTCAACAGGTTATATAAGGTGGGATGGGA
AAGGACGAATAAAAGTAGCCGTGAGATAAAACATTGAAGGTGAAAAAGGG
CAAGTGCTTTCTCAAGACAGTCTAAACAACAGAGAAATTGCCTCAAAACA
CCTAAGACCATTTTTCCATCCTTTGACTCATAATAGTTCTACCAAATGTC
AAGAACTGAAAGACTTTTTGGCGGTAGCACCATCCTTTTTGTATTGATGT
GTAATTACTATTGTCAAATCTTTTTATCATTTTCCAATCTTAGATTTGGT
TTAAAAATCGTCGTGCAAAATGGAGAAAGAAAGAACGTCACTTGGAACAG
CGTCCCGATATGTTCCCCGATTTCAGTTCCCCTTATCGCTTAGAACCGCC
CAGTATCTACGATCGTCGCGTTCCTATGCCTTCGTACACACCCACTTATC
CAACACATACTCCGCCTTTGATTGGGGCGTCATCATCAAGATCTCCGCCC
CTACCACACAATTATCAACAATCAAGTCACTCTTGGTATAATTCTCCTGA
TCACTCGGCCAATCATAATTTGTCGGGTCCAGGCCTCTCGCAACGACACA
GTCCACCTTACAACCCGACTGGCGGACTCTATAATTATCAAGATCCGATT
CGGAACAATTATTTATCGACTTGCCCACAACAAACTGTATCAACACCACA
AATCGGGAATAGGGATAATGATTTAGTTTCCCCGATTTCACTATCACCTC
GCACTCCAACGCACACATTTTCACCTCAAGGAGGTAATTTCCATATGTGA
GATATAAAGATTCGGGAATTTTCAATTATTTAAACAAAAAACGAACTAAA
TTTAGAATTTTGACAATTTTTGATATATTTTTCAGATTTTTTTATTATAT
TAAACGTAAAAATTATATATTTTCCTGTATCATATGTAAATGTAATTATA
CTTAAATATTTTACTTGCATGTTACGCCAAAACAACATACACACCTCATA
TATGTTTATAGTTAGAAAATGATTGGCTTCGTGTTGTTAAGGAGGGGTTG
GGTTGAAATACCAACCCTCTTAGGTATTGTCATCACTGTTTTTATGGAAC
AAATCAATCGAATGCAATTTCAAACAACATATGCGAAGTATAAGAAGAAG
TTTATTAGTATGTGTTGCCTCTTTTGACCTCTTTTTTAACTTGACTCTTG
ACTTGTGAAAAATATTTGAGAAATTTTAAATTTTACAAAAAAAGCTTTCC
AATTTAAACCCAAAGCAATGAACATCAGGCTAAATTAGATTAAGGTCTCG
AAATGATTTTATATTTTTTTATTCTAATTATATATGTAAAATGACAACTG
CTAATTATTTTAGTTAAACAAATATAAATTGCTACATTCAATTGGTTTTT
TTCTCCAGTCTGCAAAATTGTCCTATTAAATTTACCTCACAGTTGCGGAA
AGGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052665-exon-scaffold_218-1575043694:314136..314643 | TCONS_00052665-exon-scaffold_218-1575043694:314136..314643 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1575043694:313689..313882 | TCONS_00052665-exon-scaffold_218-1575043694:313689..313882 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1575043694:311488..312650 | TCONS_00052665-exon-scaffold_218-1575043694:311488..312650 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1510915933:314136..314643 | TCONS_00052665-exon-scaffold_218-1510915933:314136..314643 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1510915933:313689..313882 | TCONS_00052665-exon-scaffold_218-1510915933:313689..313882 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1510915933:311488..312650 | TCONS_00052665-exon-scaffold_218-1510915933:311488..312650 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1491911889:314136..314643 | TCONS_00052665-exon-scaffold_218-1491911889:314136..314643 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1491911889:313689..313882 | TCONS_00052665-exon-scaffold_218-1491911889:313689..313882 | Clytia hemisphaerica | exon |
| TCONS_00052665-exon-scaffold_218-1491911889:311488..312650 | TCONS_00052665-exon-scaffold_218-1491911889:311488..312650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:311488..314643 - |
Blast
BLAST of TCONS_00052665 vs. Swiss-Prot (Human)
Match: PITX3 (Pituitary homeobox 3 OS=Homo sapiens GN=PITX3 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.174e-25 Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1
Query: 547 GNIDHRIRRQRTHFTVTQLQKLESFFARNRYPDMAMREDIAQWCSLTESRVRIWFKNRRAKWRKKER 747
G++ + RRQRTHFT QLQ+LE+ F RNRYPDM+ RE+IA W +LTE+RVR+WFKNRRAKWRK+ER
Sbjct: 56 GSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRER 122
The following BLAST results are available for this feature:
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