TCONS_00052671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052671
Unique NameTCONS_00052671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052671 ID=TCONS_00052671|Name=TCONS_00052671|organism=Clytia hemisphaerica|type=transcript|length=2318bp
TGTCAGCGCAATGTAGTCGAGGTTGAATCGTACTTGTGGTGAATTTTGTA
CAATTCACCAATTGTTGATTTTAATTAGCATTGATTCTGATTCCATTTTA
GGCTGCTAGAAATTGTTTAGTTGGCGAAGGAAACCTTATCAAAGTTGGCG
ATTTTGGTTTGGCCAGATACGTTTTAGACGATCAATATACTGCATCCGAA
GGCACTAAATTTCCGGTGAAATGGGCTGCACCGGAAGTGATTGATTATAC
AAAGTTTAGCAGTAAATCGGACGTTTGGGCCTTCGGTATTTTATGTTGGG
AGGTGTTTTCAGGTGGTAAACCTCCTTATCCATCCTACACTAACCCGCAA
GTAGCTGAACAGGTTCGAAATGGGTATCGTCTTGAGAGGCCAACGCATTG
TCCTGTAGATATTTATAAACAAATCATGCTCAAGTCATGGGATCATCAAC
CAGAAAAACGTCCATCATTTCGAGATATCCACCAATTACTGAAAGTATTA
ACGGAAGATTATGCTGATGCTTAATGGTCATGGCTTCAACCAACAGGAAA
GTCGGTATTAGGTTATAACATTATATTCTGCTAAAAATTCTGAAGTATTA
GTTTCCTAGGCCAGGACGGCTAAACTTTATCGTTCTCGGGAAAACATTAT
TGGCGCAGTTCAAGGATCTTTCCGCTGGATAaagtggcaaaaaaattttt
tttgcttcttaAAAATTCGTAGAAAACACACAACGACTTTTGGTCTGACC
GCTTCAGTTGACTTGAAGCTACTTTTGTACCTACCCAGAGTGATGGTATT
TTTCATTGTAAAGTGACAATATCAATAGGAAAATTTGTTCAGGAATTAGA
AAGTTTAGCCTTCCTTCGGTACTTGAGAATTCTTACCTTATGTTATCACT
TGTTACAACGTGAACCTTTTTATTGTGGACATTTCACTGTTTTATGCTTG
CACCTCAATGACTCCAATTCAAGGGGAAAAAAGTTTGCAATTctgaaaaa
attattcaaacatTTTACAGGTTTCTAGGCGGGCTAACAGAGGCAATTTT
AGAGTTCGAAAATAAACTTTATCCTAATTTTATTATACACAGATCATCGT
CAATGAAATTTTACCTTCCAAAGTACATTTGTCAGCAAAATGATAAGCAA
GATATCTTGCAAGATAAGCTCATTTTTAACAATCGTTCATTTTAATGGAC
CACGCATTTGGACGAAAATCACTTTTATAATTGTCTTAAAAAACGCAATG
AAAAAGCAATCATATCATACCTTAATCAAAGAATTCCATCGAAATCAGGT
TACGATAAaaggaatgattaaaaaatgtaAGTAGCTAAAATGGTCTTTCT
TCTGTTGTCATTACAATAGTATAATGTTCCTTTTTTGGTACAAGTGCATT
GTGCTTCTTACTGACCGAATTCTTTCTTTGGGGGTAGTATTTTGTACTTT
TAGGGGTACATTGTTTTgcgattttgtttaaaaattatcGAGAAATAATA
CATTATTCTGaaccaatttttttcttttgtatattttgatattttgctgc
aattatatatttgaattttattattaaaacgtatattatattttttttga
aaaagcatagtttttcttttcacttcACCACCTTATATTTtaataatttg
ttttgattgttgaactttgaacccagaaaaagCATAGCAATTTTTACGTG
TAGCATATTGAAAACAAAGACGATAtttatttactaaaattttccgtttt
tttgcaaatttattttgtttttaaattaacattttttgttttgttttatt
ttttgttgatcaAAAAAACCTATATAACATCTCTAGTATTTCTTTATCTA
AGTTTACCTTGGCTTGACACAGGGAAGTAATGAACTTGGACTTTTTTCTT
CGAAGTAAGGGGtactttttgtattttcttttgcTATTTGATATTCCAAA
TTATAGTCTAAAGCTCAAATTGTTTTTTCCGGTCTTCTATTTTAAAAAGG
TATAAATTCTTCACTATCCTGAAAAAACGTCTCAACTAATCACATAACAA
GTAGGATTCACTGTGGAAAACGAAATGTAGCAGCTAGAGTTATAAAATTT
GCACAACTCCTAAGGTAGTCAGATGTTATAAAATTTCTGTTTTGAATCTG
GAAAATATTACTATATTACTGTATTGTAAATTTAGTCACCTAGAATCTTT
TGAATTATATAATAATAGAAGAAATTTTGTGCCATAAACATATAAAAAGG
GTAGCTAAGCTAAGACCATTTTGTGGATCTTAGACAGCTTATTAAAATCA
GATTTAGTCATTTTACTG
Run BLAST on NCBI

transcript from alignment at scaffold_218:342838..346821-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052671 ID=TCONS_00052671|Name=TCONS_00052671|organism=Clytia hemisphaerica|type=transcript|length=3984bp|location=Sequence derived from alignment at scaffold_218:342838..346821- (Clytia hemisphaerica)
TGTCAGCGCAATGTAGTCGAGGTTGAATCGTACTTGTGGTGAATTTTGTA
CAATTCACCAATTGTTGATTTTAATTAGCATTGATTCTGATTCCATTTTA
GGCTGCTAGAAATTGTTTAGTTGGCGAAGGAAACCTTATCAAAGTTGGCG
ATTTTGGTTTGGCCAGGTAAAATGCTTCAATTTGTAAGAACTGCCTTGAA
ATGTATATGAGAACAACTCACCGAAGAATTTTACTTTGGATTTTACTTCA
ATGTGGTAAACTCCTGAGTAGAACCTATTATTGTATTAAGATTTCATAAA
ATGTATTGTTTAGCCTTGTTCCACAAAGCACGAACAAGGTACTAACGTTG
TAACCGCACAGAAGCTACATGGTATTAGCTATGGACTAAGTAGATCTATC
TACAAGTTTTCCGCCTATTTTTTAATCAATCAATTAATTGTATCTTCTAG
ATACGTTTTAGACGATCAATATACTGCATCCGAAGGCACTAAATTTCCGG
TGAAATGGGCTGCACCGGAAGTGATTGATTATACAAAGTTTAGCAGTAAA
TCGGACGTTTGGGCCTTCGGTAAGAGCATTATTATTACTGGTTATATACA
GCACTTTTTTCATTATTACATTACTGGAATCATTTGAGTAATTAGTTTCA
GTCTCTAGGACTGAATCTTTTCTCATCATTTACGAACATCGTCTTTTTCA
GGTATTTTATGTTGGGAGGTGTTTTCAGGTGGTAAACCTCCTTATCCATC
CTACACTAACCCGCAAGTAGCTGAACAGGTAACAATATTTTAATAAAAGG
AGAGATTTTTGCCAATTTTTTGTCACTGCAAAGTTTTTATAGTTTCAAGA
CTTCTTTGGAATATAGAGGTCTTTCAAGTTTCATCAGTTATAATATGAGT
CTGTCATTATGGAATCAAACGTTCGAATTTAACGCTTAAATGGCGGCAGT
TACGTACTGCAACTTAGTCAAACTGAAAAGCTCTTTTGATTCAATAGTTA
ATATAAATTTGCTAGTTAATATTTACTGCTTCTAAAATTTACTTTTATAC
CGGGTGACCCACGAAAAAGTTCAGACGTTTCCCGACATCTTGAGGCCGAA
CAAATGTCCCAAAGTACTTGGAGTTTTGATATTTAGAAAGTAGATATCCT
AACTTAAAATTTGAGCTATCACTTTTTAAATTTGACCAACTTGTTCTCTA
CTTATGAGCTTTTAAAGTCAAAATTCACTTTTCGGAAAGTGTAAAAAACA
CGTAGAAAAGAGGTATTAAATTTATGCAATCAATTAGAAAATCACTTACA
AATTGACTTATTTAACGAGTTTTATGACATTAATAATTAATAACAACACC
TTTAAAAGTAATTTTTGTCTAAAACAAGACTAGTTTTTATAAAAATTGGC
GCTTTTGTAGATTTTTTAGATTTTCTTCAAAAACTGTATATTAAAAACGT
CTAAAAATACCTAATTTGATACCCCTTTTTTACGTGTTTTTTACACTTTC
CGAAAAGTGAATTTTCACTTTAAAAGCTCATAAGTAGAGAACAAATTTGT
CAAATTTAAAAAGTGATAGTTCAAATTTTAAGTTAGGATATCTACTTTCT
AAATATCTAAACTCCAAGCACTTTGGGACATTTGTTCGGCCTCAAGACGT
CAAGAAACGTCTGAACTTTTTCGTGGGTCACCCGGTATTTTCTTTTTTCT
TCTGATAGGTTCGAAATGGGTATCGTCTTGAGAGGCCAACGCATTGTCCT
GTAGATATTTATAAACAAATCATGCTCAAGTCATGGGATCATGTAAGCCA
TTCTACAATTAAATTAATCTAGAATAATATCAAAGTACCAATTAATTTTG
TGATGGTGTCGACATGGCGTTTAGGTCAATAGTAGCTTTTCAAGTTTTAC
CAAAGTTATATAATGAAGAGAAAAACCGCAATCGAATTTTAAGTGGTGAC
TGCTCATGGAACTCGAATGTTTGCTTCCGTAATTAGGAAACTTATGTAAG
TTAGACGAGCTAAGAAACTTCTATTGAAAATTAAATTTCATGGTCAAAGA
AAGGCTACCTCGCCATTAAAAAGAGCGTTCTGTATTAAAATTTATTGGAT
TCTACTTTTCAGCAACCAGAAAAACGTCCATCATTTCGAGATATCCACCA
ATTACTGAAAGTATTAACGGAAGATTATGCTGATGCTTAATGGTCATGGC
TTCAACCAACAGGAAAGTCGGTATTAGGTTATAACATTATATTCTGCTAA
AAATTCTGAAGTATTAGTTTCCTAGGCCAGGACGGCTAAACTTTATCGTT
CTCGGGAAAACATTATTGGCGCAGTTCAAGGATCTTTCCGCTGGATAAAG
TGGCAAAAAAATTTTTTTTGCTTCTTAAAAATTCGTAGAAAACACACAAC
GACTTTTGGTCTGACCGCTTCAGTTGACTTGAAGCTACTTTTGTACCTAC
CCAGAGTGATGGTATTTTTCATTGTAAAGTGACAATATCAATAGGAAAAT
TTGTTCAGGAATTAGAAAGTTTAGCCTTCCTTCGGTACTTGAGAATTCTT
ACCTTATGTTATCACTTGTTACAACGTGAACCTTTTTATTGTGGACATTT
CACTGTTTTATGCTTGCACCTCAATGACTCCAATTCAAGGGGAAAAAAGT
TTGCAATTCTGAAAAAATTATTCAAACATTTTACAGGTTTCTAGGCGGGC
TAACAGAGGCAATTTTAGAGTTCGAAAATAAACTTTATCCTAATTTTATT
ATACACAGATCATCGTCAATGAAATTTTACCTTCCAAAGTACATTTGTCA
GCAAAATGATAAGCAAGATATCTTGCAAGATAAGCTCATTTTTAACAATC
GTTCATTTTAATGGACCACGCATTTGGACGAAAATCACTTTTATAATTGT
CTTAAAAAACGCAATGAAAAAGCAATCATATCATACCTTAATCAAAGAAT
TCCATCGAAATCAGGTTACGATAAAAGGAATGATTAAAAAATGTAAGTAG
CTAAAATGGTCTTTCTTCTGTTGTCATTACAATAGTATAATGTTCCTTTT
TTGGTACAAGTGCATTGTGCTTCTTACTGACCGAATTCTTTCTTTGGGGG
TAGTATTTTGTACTTTTAGGGGTACATTGTTTTGCGATTTTGTTTAAAAA
TTATCGAGAAATAATACATTATTCTGAACCAATTTTTTTCTTTTGTATAT
TTTGATATTTTGCTGCAATTATATATTTGAATTTTATTATTAAAACGTAT
ATTATATTTTTTTTGAAAAAGCATAGTTTTTCTTTTCACTTCACCACCTT
ATATTTTAATAATTTGTTTTGATTGTTGAACTTTGAACCCAGAAAAAGCA
TAGCAATTTTTACGTGTAGCATATTGAAAACAAAGACGATATTTATTTAC
TAAAATTTTCCGTTTTTTTGCAAATTTATTTTGTTTTTAAATTAACATTT
TTTGTTTTGTTTTATTTTTTGTTGATCAAAAAAACCTATATAACATCTCT
AGTATTTCTTTATCTAAGTTTACCTTGGCTTGACACAGGGAAGTAATGAA
CTTGGACTTTTTTCTTCGAAGTAAGGGGTACTTTTTGTATTTTCTTTTGC
TATTTGATATTCCAAATTATAGTCTAAAGCTCAAATTGTTTTTTCCGGTC
TTCTATTTTAAAAAGGTATAAATTCTTCACTATCCTGAAAAAACGTCTCA
ACTAATCACATAACAAGTAGGATTCACTGTGGAAAACGAAATGTAGCAGC
TAGAGTTATAAAATTTGCACAACTCCTAAGGTAGTCAGATGTTATAAAAT
TTCTGTTTTGAATCTGGAAAATATTACTATATTACTGTATTGTAAATTTA
GTCACCTAGAATCTTTTGAATTATATAATAATAGAAGAAATTTTGTGCCA
TAAACATATAAAAAGGGTAGCTAAGCTAAGACCATTTTGTGGATCTTAGA
CAGCTTATTAAAATCAGATTTAGTCATTTTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033276XLOC_033276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052671-exon-scaffold_218-1575043694:346656..346821TCONS_00052671-exon-scaffold_218-1575043694:346656..346821Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1575043694:346253..346371TCONS_00052671-exon-scaffold_218-1575043694:346253..346371Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1575043694:346044..346120TCONS_00052671-exon-scaffold_218-1575043694:346044..346120Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1575043694:345030..345113TCONS_00052671-exon-scaffold_218-1575043694:345030..345113Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1575043694:342838..344709TCONS_00052671-exon-scaffold_218-1575043694:342838..344709Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1510915933:346656..346821TCONS_00052671-exon-scaffold_218-1510915933:346656..346821Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1510915933:346253..346371TCONS_00052671-exon-scaffold_218-1510915933:346253..346371Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1510915933:346044..346120TCONS_00052671-exon-scaffold_218-1510915933:346044..346120Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1510915933:345030..345113TCONS_00052671-exon-scaffold_218-1510915933:345030..345113Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1510915933:342838..344709TCONS_00052671-exon-scaffold_218-1510915933:342838..344709Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1491911889:346656..346821TCONS_00052671-exon-scaffold_218-1491911889:346656..346821Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1491911889:346253..346371TCONS_00052671-exon-scaffold_218-1491911889:346253..346371Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1491911889:346044..346120TCONS_00052671-exon-scaffold_218-1491911889:346044..346120Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1491911889:345030..345113TCONS_00052671-exon-scaffold_218-1491911889:345030..345113Clytia hemisphaericaexon
TCONS_00052671-exon-scaffold_218-1491911889:342838..344709TCONS_00052671-exon-scaffold_218-1491911889:342838..344709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:342838..346821 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86725	1.73884	0.590451	0.223612	10.6849	7.86968	12.0681	12.0674	10.3624	11.3606	11.6404	7.2374	8.23424	7.78451	5.56889	6.51957	6.84452	7.02835	6.09784	7.61597	7.56301	6.59255	4.18546	5.71656	6.80904	9.88101	11.6716	7.40974	12.0242	10.5007
Blast
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BLAST of TCONS_00052671 vs. Swiss-Prot (Human)
Match: TEC (Tyrosine-protein kinase Tec OS=Homo sapiens GN=TEC PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 6.503e-41
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 3 
Query:  108 RNCLVGEGNLIKVGDFGLARYVLDDQYTASEGTKFPVKWAAPEVIDYTKFSSKSDVWAFGILCWEVFSGGKPPYPSYTNPQVAEQVRNGYRLERPTHCPVDIYKQIMLKSWDHQPEKRPSFRDIHQLLKVLTE 506
            RNCLV E  ++KV DFG+ARYVLDDQYT+S G KFPVKW  PEV +Y++FSSKSDVW+FG+L WEVF+ G+ P+  YTN +V   V  G+RL +P      +Y ++ML+ W  +PE RPSF D+ + +  L E
Sbjct:  493 RNCLVSEAGVVKVSDFGMARYVLDDQYTSSSGAKFPVKWCPPEVFNYSRFSSKSDVWSFGVLMWEVFTEGRMPFEKYTNYEVVTMVTRGHRLYQPKLASNYVY-EVMLRCWQEKPEGRPSFEDLLRTIDELVE 624
The following BLAST results are available for this feature:
BLAST of TCONS_00052671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEC6.503e-4154.14Tyrosine-protein kinase Tec OS=Homo sapiens GN=TEC... [more]
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