TCONS_00052676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052676
Unique NameTCONS_00052676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052676 ID=TCONS_00052676|Name=TCONS_00052676|organism=Clytia hemisphaerica|type=transcript|length=1111bp
aacttaGAGCATCAAAACAAGAAAGGACGATGGAGGTGAAACCAGAATTG
GTGGCTACTGAAGATGAAATACGTTattacaaatgtcaaaaattacGCGG
AAAGTTTGACGAGAAACTTCAGGAGAAAGTATTTGATGAAATGAAGACTG
AAGATCCTCAGGAAATCTACAAATTCTTTCAAACCAAGATAAAGCAAATC
CTAAAAAGTAGGAAGAAAGGAGCCATCAATGTTAACCAGTTTAACCTTCT
CCTACCATCGAACGGCGAGACAAATATTAAACTGTTCGATACAAGCTTGC
TGATTTTTGTACTGACAGAGTTCTTCAATAGCGAACATCACGTTCTGCAG
AAAATCCGAAACTGGTTGCAACATAAAACACCACCTGAACTCGACGAGCA
ACAATTTAGCGATATCTTTGATGCAGTCGAGAAACCTTTGATGGATTTAG
GAGTACCAAAGGAGGATTTGGAAAGAATCAAGAAAATGAGAGTGATGGAT
GCTGAAGCGAAAAGATTGCTGAAAATCAAATCCTTCAATTACAACTGTCA
ACCTCCTATTGCCAATCATCACCATCGTGAAGCAGTTATTGATAACATCC
ATGCAGCTATGCTTCTACAACATGCAGATGACAAAAAGTTTGGAGTTGTT
GTCAGTGGATTACCAGGTTGCGGAAAATCTGAAGCAGCTAAAGTCTACTG
GAAGACCTTCCAAAAGAAGTATTATGAGGACGCAGTCTGTTGGGTAAATT
GTAATGACTATATGTCTATGCTGAAATCCTTTGGCGATATTGCTGACCGA
TGCGGAATTAACACCAAAAAACCTGACGGATCGTACAAAAAGTTAGAGGA
GATTGCGGACCTTGTGTACAGGTTCTTTAGTACGGAACAAGAAGAAAACA
TTCCAAGGAAAGTTCTATTCATCTTCGATAACGCTGATGACCAAAATGAC
GTTGGTAAATTCATTCCAACGGCAAACTATGATGCAATACACATGCTAAT
CACATCACAGTGTCAAGTATGGGATCTACGTTTCCGGGTTATCAAGCTTG
ATGTTTTCACAGTTGAAGAATCTCAAATCTTTCTTCAACAAAATATCAAA
CGGGATGAAAC
Run BLAST on NCBI

protein sequence of TCONS_00052676-protein

>TCONS_00052676-protein ID=TCONS_00052676-protein|Name=TCONS_00052676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
LRASKQERTMEVKPELVATEDEIRYYKCQKLRGKFDEKLQEKVFDEMKTE
DPQEIYKFFQTKIKQILKSRKKGAINVNQFNLLLPSNGETNIKLFDTSLL
IFVLTEFFNSEHHVLQKIRNWLQHKTPPELDEQQFSDIFDAVEKPLMDLG
VPKEDLERIKKMRVMDAEAKRLLKIKSFNYNCQPPIANHHHREAVIDNIH
AAMLLQHADDKKFGVVVSGLPGCGKSEAAKVYWKTFQKKYYEDAVCWVNC
NDYMSMLKSFGDIADRCGINTKKPDGSYKKLEEIADLVYRFFSTEQEENI
PRKVLFIFDNADDQNDVGKFIPTANYDAIHMLITSQCQVWDLRFRVIKLD
VFTVEESQIFLQQNIKRDE
Run BLAST on NCBI

transcript from alignment at scaffold_218:475649..478022-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052676 ID=TCONS_00052676|Name=TCONS_00052676|organism=Clytia hemisphaerica|type=transcript|length=2374bp|location=Sequence derived from alignment at scaffold_218:475649..478022- (Clytia hemisphaerica)
AACTTAGAGCATCAAAACAAGAAAGGTAACGATATTATTCATTACATTCT
TCTTAGCCTTATCATGTTTATAATTTTTAACGAATCTACATTCAAATTTA
TGATCAGCAAAAAATAAAGTAGTTCTTGGATTCCCAAGTCAATTTGATGA
TGTCAAAAAGTACTTTTTCACGATGCTTTATAAACCCTGACCGCAGTATT
GCCATCACGTTCATCTGCTAAGACCATTTTCAGACGTTATGGTTTCGTAT
CGCCCCGAAATGAAACAGTTCCAAGACACTTACATTTGAAACGTCAAAAA
AAAGATCGAAACGGTTTTTCTCTTCTATTTAAATTGGAGGTATTGCTCCA
TATCATTGCTCTGAAAAGATCAAAAATCAGTATGAACACTTCCTTTCCTT
GCTTAACACCATACAGGAGCGATACAAAAGCGTAACATCCAAACATGGTC
AAATAGAATAATTTCTACACTGTTATACTCAGTGCCTCATCAACTTCTTT
TAGTTCGTTGGTCTGCGCAGTGAATGTAATTTTATGAAATACATGAAACA
AAAATAAATACATTAGTCTGAATCACATACCTCTACAAAACTGCAGGTAG
CTAGAACATGAATCCGTAACTGGATGCTAGCAGCCTAGAAAGAGGGATGA
AATTCAATACTAATGAATACACGTAGCTATTTAAAATTGTTTATTTTCAG
CATGATGGAGGAGAAACCAGAATTGGTGGCTACTGAAGAAGAAGTACGTT
ATTACAAATGCCAAAAATTACGCGGGAAGTTTGACGAGAAACTTCAGGAG
AAAGTATTTGATGAAATGCAAACTGAATATCCTCAGGAAATCTACAAATT
CTTTGAAACAAAGAAAAAGCAAATCCTAAAATGTAGGAAGAAAGGAGTCA
TCAATGTTAACCAGTTTAACCTTCTCTTACCATCGAACGGCGAAACAAAT
GTTAAACTGTTCGATACAAGCTTGCTGATTTTTGTACTGACAGAGTTTTT
CAATAGCGAGCATCATATTCTGCAGAAAATCCGAAACTGGTTGCAACATA
AAANCTAATCAACCTATTTTAGTTCGTTGGTCTGCGCAGTGAATGTAATT
TCATGAAATACATGAAACAAAAATAAATACATTAGTCTGAATCACATACC
TCTACAAAAATGCAGGTAGCCAGGTAGTAAGGAGTATGAATTCGTCAGTG
GATGCCAGCAGCCTAGAAAGACATGAGAAAAGGGATGAAATTCAATACTA
ATGAATATACGTAGCCATTTAAAATTGTTTATTTTCAGGACGATGGAGGT
GAAACCAGAATTGGTGGCTACTGAAGATGAAATACGTTATTACAAATGTC
AAAAATTACGCGGAAAGTTTGACGAGAAACTTCAGGAGAAAGTATTTGAT
GAAATGAAGACTGAAGATCCTCAGGAAATCTACAAATTCTTTCAAACCAA
GATAAAGCAAATCCTAAAAAGTAGGAAGAAAGGAGCCATCAATGTTAACC
AGTTTAACCTTCTCCTACCATCGAACGGCGAGACAAATATTAAACTGTTC
GATACAAGCTTGCTGATTTTTGTACTGACAGAGTTCTTCAATAGCGAACA
TCACGTTCTGCAGAAAATCCGAAACTGGTTGCAACATAAAACACCACCTG
AACTCGACGAGCAACAATTTAGCGATATCTTTGATGCAGTCGAGAAACCT
TTGATGGATTTAGGAGTACCAAAGGAGGATTTGGAAAGAATCAAGAAAAT
GAGAGTGATGGATGCTGAAGCGAAAAGATTGCTGAAAATCAAATCCTTCA
ATTACAACTGTCAACCTCCTATTGCCAATCATCACCATCGTGAAGCAGTT
ATTGATAACATCCATGCAGCTATGCTTCTACAACATGCAGATGACAAAAA
GTTTGGAGTTGTTGTCAGTGGATTACCAGGTTGCGGAAAATCTGAAGCAG
CTAAAGTCTACTGGAAGACCTTCCAAAAGAAGTATTATGAGGACGCAGTC
TGTTGGGTAAATTGTAATGACTATATGTCTATGCTGAAATCCTTTGGCGA
TATTGCTGACCGATGCGGAATTAACACCAAAAAACCTGACGGATCGTACA
AAAAGTTAGAGGAGATTGCGGACCTTGTGTACAGGTTCTTTAGTACGGAA
CAAGAAGAAAACATTCCAAGGAAAGTTCTATTCATCTTCGATAACGCTGA
TGACCAAAATGACGTTGGTAAATTCATTCCAACGGCAAACTATGATGCAA
TACACATGCTAATCACATCACAGTGTCAAGTATGGGATCTACGTTTCCGG
GTTATCAAGCTTGATGTTTTCACAGTTGAAGAATCTCAAATCTTTCTTCA
ACAAAATATCAAACGGGATGAAAC

Coding sequence (CDS) from alignment at scaffold_218:475649..478022-

>TCONS_00052676 ID=TCONS_00052676|Name=TCONS_00052676|organism=Clytia hemisphaerica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_218:475649..478022- (Clytia hemisphaerica)
GACGATGGAGGTGAAACCAGAATTGGTGGCTACTGAAGATGAAATACGTT
ATTACAAATGTCAAAAATTACGCGGAAAGTTTGACGAGAAACTTCAGGAG
AAAGTATTTGATGAAATGAAGACTGAAGATCCTCAGGAAATCTACAAATT
CTTTCAAACCAAGATAAAGCAAATCCTAAAAAGTAGGAAGAAAGGAGCCA
TCAATGTTAACCAGTTTAACCTTCTCCTACCATCGAACGGCGAGACAAAT
ATTAAACTGTTCGATACAAGCTTGCTGATTTTTGTACTGACAGAGTTCTT
CAATAGCGAACATCACGTTCTGCAGAAAATCCGAAACTGGTTGCAACATA
AAACACCACCTGAACTCGACGAGCAACAATTTAGCGATATCTTTGATGCA
GTCGAGAAACCTTTGATGGATTTAGGAGTACCAAAGGAGGATTTGGAAAG
AATCAAGAAAATGAGAGTGATGGATGCTGAAGCGAAAAGATTGCTGAAAA
TCAAATCCTTCAATTACAACTGTCAACCTCCTATTGCCAATCATCACCAT
CGTGAAGCAGTTATTGATAACATCCATGCAGCTATGCTTCTACAACATGC
AGATGACAAAAAGTTTGGAGTTGTTGTCAGTGGATTACCAGGTTGCGGAA
AATCTGAAGCAGCTAAAGTCTACTGGAAGACCTTCCAAAAGAAGTATTAT
GAGGACGCAGTCTGTTGGGTAAATTGTAATGACTATATGTCTATGCTGAA
ATCCTTTGGCGATATTGCTGACCGATGCGGAATTAACACCAAAAAACCTG
ACGGATCGTACAAAAAGTTAGAGGAGATTGCGGACCTTGTGTACAGGTTC
TTTAGTACGGAACAAGAAGAAAACATTCCAAGGAAAGTTCTATTCATCTT
CGATAACGCTGATGACCAAAATGACGTTGGTAAATTCATTCCAACGGCAA
ACTATGATGCAATACACATGCTAATCACATCACAGTGTCAAGTATGGGAT
CTACGTTTCCGGGTTATCAAGCTTGATGTTTTCACAGTTGAAGAATCTCA
AATCTTTCTTCAACAAAATATCAAACGGGATGAACTTAGAGCATCAAAAC
AAGAAAGGACGATGGAGGTGAAACCAGAATTGGTGGCTACTGAAGATGAA
ATACGTTATTACAAATGTCAAAAATTACGCGGAAAGTTTGACGAGAAACT
TCAGGAGAAAGTATTTGATGAAATGAAGACTGAAGATCCTCAGGAAATCT
ACAAATTCTTTCAAACCAAGATAAAGCAAATCCTAAAAAGTAGGAAGAAA
GGAGCCATCAATGTTAACCAGTTTAACCTTCTCCTACCATCGAACGGCGA
GACAAATATTAAACTGTTCGATACAAGCTTGCTGATTTTTGTACTGACAG
AGTTCTTCAATAGCGAACATCACGTTCTGCAGAAAATCCGAAACTGGTTG
CAACATAAAACACCACCTGAACTCGACGAGCAACAATTTAGCGATATCTT
TGATGCAGTCGAGAAACCTTTGATGGATTTAGGAGTACCAAAGGAGGATT
TGGAAAGAATCAAGAAAATGAGAGTGATGGATGCTGAAGCGAAAAGATTG
CTGAAAATCAAATCCTTCAATTACAACTGTCAACCTCCTATTGCCAATCA
TCACCATCGTGAAGCAGTTATTGATAACATCCATGCAGCTATGCTTCTAC
AACATGCAGATGACAAAAAGTTTGGAGTTGTTGTCAGTGGATTACCAGGT
TGCGGAAAATCTGAAGCAGCTAAAGTCTACTGGAAGACCTTCCAAAAGAA
GTATTATGAGGACGCAGTCTGTTGGGTAAATTGTAATGACTATATGTCTA
TGCTGAAATCCTTTGGCGATATTGCTGACCGATGCGGAATTAACACCAAA
AAACCTGACGGATCGTACAAAAAGTTAGAGGAGATTGCGGACCTTGTGTA
CAGGTTCTTTAGTACGGAACAAGAAGAAAACATTCCAAGGAAAGTTCTAT
TCATCTTCGATAACGCTGATGACCAAAATGACGTTGGTAAATTCATTCCA
ACGGCAAACTATGATGCAATACACATGCTAATCACATCACAGTGTCAAGT
ATGGGATCTACGTTTCCGGGTTATCAAGCTTGATGTTTTCACAGTTGAAG
AATCTCAAATCTTTCTTCAACAAAATATCAAACGGGATGAACTTAGAGCA
TCAAAACAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033281XLOC_033281Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052676-proteinTCONS_00052676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052676-exon-scaffold_218-1575043694:477998..478022TCONS_00052676-exon-scaffold_218-1575043694:477998..478022Clytia hemisphaericaexon
TCONS_00052676-exon-scaffold_218-1575043694:475649..476734TCONS_00052676-exon-scaffold_218-1575043694:475649..476734Clytia hemisphaericaexon
TCONS_00052676-exon-scaffold_218-1510915933:477998..478022TCONS_00052676-exon-scaffold_218-1510915933:477998..478022Clytia hemisphaericaexon
TCONS_00052676-exon-scaffold_218-1510915933:475649..476734TCONS_00052676-exon-scaffold_218-1510915933:475649..476734Clytia hemisphaericaexon
TCONS_00052676-exon-scaffold_218-1491911889:477998..478022TCONS_00052676-exon-scaffold_218-1491911889:477998..478022Clytia hemisphaericaexon
TCONS_00052676-exon-scaffold_218-1491911889:475649..476734TCONS_00052676-exon-scaffold_218-1491911889:475649..476734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:475649..478022 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.115066	0.0445341	0	0.0915216	0.152559	0.65973	0.738968	0.661991	0.532461	0.521031	0.559543	2.30057	1.89072	1.72328	2.2401	0.673734	0.361334	3.21796	3.6565	0.160383	0	0	0.0411752	0.45	0.56533	0	0	0.439009	0.546707
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top