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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052680 ID=TCONS_00052680|Name=TCONS_00052680|organism=Clytia hemisphaerica|type=transcript|length=671bp
aaaaaagaaattatgacGGTGGAGTGTGGAGGTATGTTGTAATCTTTATT
GTTCTTGACCGGTTCTAGCACACGTGGGATTTCTCTTGAGACATGCGATG
CGCATATAAAAGCAACTAAATACTCGTTAAATTCAATTAGTCAGTTCAGT
GCATCGATTACGAGCGGTCATAAAATTCCCATTCAATCTATTACTACGTT
TTAATTTGATACATACTCCAGGGAATAAAAATGGAATCGACATCAGTGAT
GAAATTTATGATTCAAACTGCATTATTATTGGCTGTTTGCGACGTCGTCT
ACGGTGACGGAAATATGATTATAACGGCGGCAGGCAACGTCCAGACGAAT
GAAATCAAAACAGGACGCACGTTTAGTTTATGTGGAGATACGTTTGTGAT
GGCTTGGAAATACATGTGCAAATATAAACAACATCAGCGAAATCGTGTGG
AGAATTTTAAAAGAAGAAGCAAGCGTGCTATCGAAGATTTCACGAAACcg
aacaacaacaaaaacttGGTATCAAAAACTGGAGCACTGTCCTTCTTGAA
AGCACGGCACCGTCGACAAGCAGTGTTCAGGGGTACGGATAACGCAAATG
AAGAATGTTGCTACGAATCATGTTCATATGGTGAAATCGCTGAATACGAT
TGTTAAAAGTGTATAGTGACA Run BLAST on NCBI protein sequence of TCONS_00052680-protein >TCONS_00052680-protein ID=TCONS_00052680-protein|Name=TCONS_00052680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MESTSVMKFMIQTALLLAVCDVVYGDGNMIITAAGNVQTNEIKTGRTFSL
CGDTFVMAWKYMCKYKQHQRNRVENFKRRSKRAIEDFTKPNNNKNLVSKT
GALSFLKARHRRQAVFRGTDNANEECCYESCSYGEIAEYDC Run BLAST on NCBI transcript from alignment at scaffold_218:546059..546968- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052680 ID=TCONS_00052680|Name=TCONS_00052680|organism=Clytia hemisphaerica|type=transcript|length=910bp|location=Sequence derived from alignment at scaffold_218:546059..546968- (Clytia hemisphaerica)
AAAAAAGAAATTATGACGGTGGAGTGTGGAGGTATGTTGTAATCTTTATT
GTTCTTGACCGGTTCTAGCACACGTGGGATTTCTCTTGAGACATGCGATG
CGCATATAAAAGCAACTAAATACTCGTTAAATTCAATTAGTCAGTTCAGT
GCATCGATTACGAGCGGTCATAAAATTCCCATTCAATCTATTACTACGTT
TTAATTTGATACATACTCCAGGGAATAAAAATGGAATCGACATCAGTGAT
GAAATTTATGATTCAAACTGCATTATTATTGGCTGTTTGCGACGTCGTCT
ACGGTGACGGAAATATGATTATAACGGCGGCAGGCAACGTCCAGACGAAT
GAAATCAAAACAGGACGCACGTTTAGTTTATGTGGAGATACGTTTGTGAT
GGCTTGGAAATACATGTGCAAATATAAACAACATCAGCGAAATCGTGTGG
AGAATTTTAAAAGAAGAAGCAAGCGTGCTATCGAAGGTAATTTTCATTGC
GAATTTTCATTGTTAAATTTTAAAGCGATGCTTTTTTTTCGACGGTTTGC
TTAACTTTATTAGGCGAGTTTAGCGCCTTGGTAATTTGTTCCTATTTATT
AAAACGAGCGCTAAGGCTAGAAGGACAATGCTTGCATGCTTTATCCACTG
TTATCAATCACTGACAAAGTTTAAAGATCTGTAAGATTTTCTTCCATCAA
TTAAAGGTTTTATTTCCATTTTCAGATTTCACGAAACCGAACAACAACAA
AAACTTGGTATCAAAAACTGGAGCACTGTCCTTCTTGAAAGCACGGCACC
GTCGACAAGCAGTGTTCAGGGGTACGGATAACGCAAATGAAGAATGTTGC
TACGAATCATGTTCATATGGTGAAATCGCTGAATACGATTGTTAAAAGTG
TATAGTGACA Coding sequence (CDS) from alignment at scaffold_218:546059..546968- >TCONS_00052680 ID=TCONS_00052680|Name=TCONS_00052680|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_218:546059..546968- (Clytia hemisphaerica)
ATTTCACGAAACCGAACAACAACAAAAACTTGGTATCAAAAACTGGAGCA
CTGTCCTTCTTGAAAGCACGGCACCGTCGACAAGCAGTGTTCAGGGGTAC
GGATAACGCAAATGAAGAATGTTGCTACGAATCATGTTCATATGGTGAAA
TCGCTGAATACGATTGTTAAATGGAATCGACATCAGTGATGAAATTTATG
ATTCAAACTGCATTATTATTGGCTGTTTGCGACGTCGTCTACGGTGACGG
AAATATGATTATAACGGCGGCAGGCAACGTCCAGACGAATGAAATCAAAA
CAGGACGCACGTTTAGTTTATGTGGAGATACGTTTGTGATGGCTTGGAAA
TACATGTGCAAATATAAACAACATCAGCGAAATCGTGTGGAGAATTTTAA
AAGAAGAAGCAAGCGTGCTATCGAAGATTTCACGAAACCGAACAACAACA
AAAACTTGGTATCAAAAACTGGAGCACTGTCCTTCTTGAAAGCACGGCAC
CGTCGACAAGCAGTGTTCAGGGGTACGGATAACGCAAATGAAGAATGTTG
CTACGAATCATGTTCATATGGTGAAATCGCTGAATACGATTGTTAAATGG
AATCGACATCAGTGATGAAATTTATGATTCAAACTGCATTATTATTGGCT
GTTTGCGACGTCGTCTACGGTGACGGAAATATGATTATAACGGCGGCAGG
CAACGTCCAGACGAATGAAATCAAAACAGGACGCACGTTTAGTTTATGTG
GAGATACGTTTGTGATGGCTTGGAAATACATGTGCAAATATAAACAACAT
CAGCGAAATCGTGTGGAGAATTTTAAAAGAAGAAGCAAGCGTGCTATCGA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052680-exon-scaffold_218-1575043694:546483..546968 | TCONS_00052680-exon-scaffold_218-1575043694:546483..546968 | Clytia hemisphaerica | exon |
| TCONS_00052680-exon-scaffold_218-1575043694:546059..546243 | TCONS_00052680-exon-scaffold_218-1575043694:546059..546243 | Clytia hemisphaerica | exon |
| TCONS_00052680-exon-scaffold_218-1510915933:546483..546968 | TCONS_00052680-exon-scaffold_218-1510915933:546483..546968 | Clytia hemisphaerica | exon |
| TCONS_00052680-exon-scaffold_218-1510915933:546059..546243 | TCONS_00052680-exon-scaffold_218-1510915933:546059..546243 | Clytia hemisphaerica | exon |
| TCONS_00052680-exon-scaffold_218-1491911889:546483..546968 | TCONS_00052680-exon-scaffold_218-1491911889:546483..546968 | Clytia hemisphaerica | exon |
| TCONS_00052680-exon-scaffold_218-1491911889:546059..546243 | TCONS_00052680-exon-scaffold_218-1491911889:546059..546243 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:546059..546968 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016179 | Insulin-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005179 | hormone activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005179 |
hormone activity |
Blast
The following BLAST results are available for this feature:
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