TCONS_00052682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052682
Unique NameTCONS_00052682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052682 ID=TCONS_00052682|Name=TCONS_00052682|organism=Clytia hemisphaerica|type=transcript|length=2597bp
AGGACTTATGGGAAGAGAAACAATTAACCTTCAATGCAAACTCTGAGCCA
AGGACGAATAAAAACGAAATTCGAAGTGACAGCGACAGTTCAGAAGAAGA
ACAAAATACTGCAGTCgacgaagatgaagatgaatcATCTGTGGTCACGT
GGTCCTCCTCAACAGCCAATcagaacaaaaaacaacaagatgCTGATGAC
GTCATGGATATCGATAATGATAACAGTAATGATGGAAAAGGTATGTGGAC
GGCAGACTTCAGTCATATGGATGTCCAAGGAACCGACTCTAACGGTTCCT
CAAATTGGGCGGCTGCTAACGCCACATCGACGCCCACCAGTGTCCTCTCA
AGCTCTGGTGACAATTTTGCTGATTTCACGGATATATCTAACTTCGGAAT
CTCTGGTGAAGGTGAAGGTGAAGGGGAGGGTAACGATGCACCTGTTGCCA
TGGAAACAGACGGAACGACCAAACCCTCTATTTACGAAGTGAAAATGGAT
GAGGACACTGCAGACGCGTCTACGGAAACTAAGTCAACATCCCCCTCAGA
GAAGACAAGTAGTCCAATCACAACGCAACAACAAGAAGAGCCCTCTTCTC
AATCATCACCTGAacaagaagaaagtgaaaaaatgaaaacggaCGAGGAA
ACACCCAGCGCAGTCGAAACGCCCGCCGCCCTTGTTTCGGAAGGTGGTAA
TCAGCAAAAAGAAGACTCTGTTACGCCATCTACTTCAACAGACAATATTG
AAACAACTAGCTCGCTACCTCAAGCTAATGCAAGccaatcagacgATCTT
TCACCTAAGGGAGATAACACAGAGAATCGCAGCAGTCCAACTCCTGAAAA
TCCATCTTCATCTTCGTCAAAAAATGATGGagataataaaaaaagtgaag
aaacaaaaattgaaagctCTTCTTCAAACGAAACGACGAAAAAAGACGAA
AATAGTGATCCGATGACATAATGAGTACATAACAAATCAAATGATGGAAT
AAAAGGGACTTCTGTGAAATGATCGATGGATATTTCATCGTTCGCTTGAT
TGCTATGAGGTGGTATATCATAAGTGTTCAAAGATGGAAATAAACGAACT
TTTGAATGCAAATATTTTCCTGGTGAAAGACTGTGAAATAAAGTTGGCTT
TTGGAGAGCGTGGGTTTGTATTTAATGTTTGTATAAGTGAGGAAGAACTC
ATGCACAAGATTACCTGGAGTAAGCGAAGCAATAGTTGATTATGAAGTTT
TCGATCCTAATTATTATAATACCGGGTGTCAGACACTGTCCGGACTTCTG
GTTGTTCGGTCAAGGACTGGAAGATTAACTTGAGTATATGATTCTTTTAT
ATGAAAAGAAAGTCAACATGCCAGAGCAATTGAAAGGAATAGAAAAAAAG
CGCTTCTCTGATTACCCAAAATGTTCTGATCTTTTCTATTGAAAACtcct
ttgttttagctttaattAGGTAGGTGAtgaaagtttagaaaaaaacgGCT
TGTCGTGCGAAGAGGGCTGGTTTCTATATGGCTATGTCTATAAAAGCgga
ttgtttttgtttgtttttggtcCATTACTCTTGAACTTTCAGTATCCAGT
AACAAATTTTAATCTAACTTGTAGTCGGAAAAATTCTCATCACGATGATA
TCAAGTTACTTCGAGAAATTAAAACAGatttaatttcttaatttttggca
cTATAGCTTTTTATCTAATTATGTCGTCGTGATGCCGTTATATCATTAGA
AGCGCTAGAATATTCTGACCAAGAAAATATAGGTATATTTTGGTCTGAGC
GAGCTGTTCCCAAAATATAAGCATAATTagactcaaaacaaaagaatttc
gcgACATCACGCTAactatgcagattttttattatcaacaaaagaaatcc
attaaCCGAAAAAAACTCCTTTATGGGCAAAGGACCTGGTATACATGACG
AGccgtatttccattgttttcaagaagctgtttttctatttcCTTTACAC
TTCTCTGGACACATACACCTTGAAAGatatgaaattattttattctACCA
AAATAATAAACGAGATCTGTATAAACATTTTTCAATGTAGAAGTTATTTT
TTGCCTGTTTTGGtgtctttcctttttttttcaaaattaaaaatataaat
tttccaaatctttttttctccAGTTTTTATGtttgaagattttaaaaatt
ttgctcagttttttttcttcgtaTTTATGTTTCTTGGCAGTCAAATACTG
CACGGTTTTCCAATATCAACCTCTATgatcttcaaattttgatctcGGAG
TAATTGCCCCTAGACGAGCAGTTTAAAGCTTTCAATTCGATCATTCGTTT
TCTCAAATACCTGCCTAACATAAAGTTGGAGGTCCGAACTGTTCACCTAA
CTGGTTTATCGAGGTCTTTCGTAAATTATTATTTGCTATGATAAGTTCCT
TGattgtctgtaaaatatttcgaaaaaaaaacacatggacaggaaacttt
tttgatatattatataatttataattttttcttttatgaaaattttatta
attgaGTAATAACGATAATAAAAACCGTACATCAAACTTACAAATAA
Run BLAST on NCBI

transcript from alignment at scaffold_218:771077..776777-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052682 ID=TCONS_00052682|Name=TCONS_00052682|organism=Clytia hemisphaerica|type=transcript|length=5701bp|location=Sequence derived from alignment at scaffold_218:771077..776777- (Clytia hemisphaerica)
AGGACTTATGGGAAGAGAAACAATTAACCTTCAATGCAAACTCTGAGCCA
AGGACGAAGTAAGCTGCGTATTGTTATTATTTAAAAAAACATATAGATTG
CTCCTGATTANACTGTTTGAATCAGGAGTCAACACTTTTTTATATCCTTT
CCATTACAGGAGAACGAGAAATTATTCGAGAGCATTTGTGAACAGAAAAT
CAAACCTTTTGACGACAGTGACGAAGATGACGAGGAAGAGGTTTGCAAAC
TAGTACCCAGTCTATTTTTTCTTACACATTTTTATGTAAATCTCATTGTA
TCCGTAAGAAAAACAGAAGGTGTTATAGTTTTGAACGTTCAGTGACTTAA
AGATCTGAATAAATACTCATCAGTTTCTGAAACATTGCCAATATTTGATA
TTGAGGTATTTTAACTTCTCCCGCTTTCAGGACTTATGGGAAGAGAAACA
ATTAACCTTCAATGCAAACTCTGAGCCAAGGACGAAGTAAGCTGCGTATT
GTTATTATTTAAAAAAACATATAGATTGCTCCTGATTACACGACTTGATT
ATACAAAGTTTACCAAATGGGTGATTGGTTTACACTGAACCCTGAGAGTG
CATCGAGCATAAAATTTACTTTAGGCTTATTGAACTTTTGTGGTACTTAA
AAAGGTAAAAGAAACGGTGTATTTCTTAGAACTTTTGTGGAATATAGATT
TTAATGAATATAGATATTAACAACTTTTAAGTTGTACATCAAAGGGGGGG
CATCAAACGTCATAGCGATCAAAACCTCTCAAATCATAAAACAAGAAAGT
CACTATGTAGGCCAAGATTTCCATGCCCAATAACACGTAATTTCTTTTAA
TGTTATGCAGGCTTTACCTCGCATTGTATTCTACCTTCTTCTCCTTAGTA
AAAACGAAATTCGAAGTGACAGCGACAGTTCAGAAGAAGAACAAAATACT
GCAGTCGACGAAGATGAAGATGAATCATCTGTGGTCACGTGGTCCTCCTC
AACAGCCAATCAGAACAAAAAACAACAAGATGCTGATGACGTCATGGATA
TCGATAATGATAACAGTAATGATGGAAAAGGTCCGTTAATAGATTCCATT
TTGCTGCAGTTTCTTTTCTCATTAGATGATAATGGCTGACTGTATTTCCC
AGAATGCACTTTCAAATCTGTAGATGTTTAAACGTTTTTCAGTGTTAAAT
ATGATTCACTCTGAGTGTTTGTCTAATTTTTGTATTTTCAGTCGCCTAGT
TTTGCCACTTAATGTAAAATGTCTAACTATACTTATATCTACCTAGCGCC
AAGGCTGAACGTTGGTGTTACGGAATTTTAAGGACTCTCTCTACTCTATT
TTATTAACTCGCTTCTCTACGAGAGGGGGTTAGATCCCAACACTACCAAG
AGACCAACTCGCAAACCTAACGGTGCACCTGCCAATTTAGTCTGTAGTTC
AACTCCTATCATGACTCTAGCTAACTCAGACCACCAACAATTTCCTGAAT
CGATTGAAAAAAATTGTCTAAAATAATTAGATTTCGTTGATGGTTGAGAA
AGATCGAAGTGTATGTTATTAAGACTTTATTATTTTCTTTCTCAGGTATG
TGGACGGCAGACTTCAGTCATATGGATGTCCAAGGAACCGACTCTAACGG
TTCCTCAAATTGGGCGGCTGCTAACGCCACATCGACGCCCACCAGTGTCC
TCTCAAGCTCTGGTGACAATTTTGCTGATTTCACGGATATATCTAACTTC
GGAATGTAAGTTCATCGTATTTTAATTACTCAAACCGGTCATCTTCTGCA
TGAGTATGGTCTGTCTGCAGCACAACCAAATAATCCTTTTAAGAAATTNC
AATTACTCAAACCAGTCATCTTCTGCATGAGTATGGTCTGTCTGCAGCAC
AACCAAATAATCCTTTTAAGAAATTTGTAAGAAAGAAAACTATCGCTCGC
ACATATTCAATTCTCAATCGTAATTTGGTTATGTCCTAAGTACCCAATCT
TCATGATAAGCTTCCGAAATTTGGGCCATGAGAATCTTTTACACCTAAAT
GCGCACTTGAACCTTTTTCTTTTTGCATCGGTGAAACGAACTGTGCATAT
CCTCTCATTATTTCCTAAATTTTTTGACGAGATTTTCTGTTTTTCTTTTG
TCTCCAGCTCTGGTGAAGGTGAAGGTGAAGGGGAGGGTAACGATGCACCT
GTTGCCATGGAAACAGACGGAACGACCAAACCCTCTATTTACGGTATGTT
TGATCTCATCACGTATAAGTCAATCTGAAATCTATTTCGGATCCTCTATC
AAATCCTTAAACTTAGCACACTTATAATTGTTTTCCGTAAAATAAACAAC
AATTGAAACCGATTTGTTCTATATATGGCTCTCTGGTAAAACCTTTGCAG
CAATTATCACCAGTTTATAAAGGGTCTAGAAAATTTTGGCCCATTTTGGA
GGTAAATCAATTGCATCAAGTTTTCAATATTTCTATGTTGATGTTTTTCC
CTCTATTTTGCAACAGAAGTGAAAATGGATGAGGACACTGCAGACGCGTC
TACGGAAACTAAGTAAGCGATTCCCGTTGTTGTTTTCAACGTCTATTCTT
AATATTAGTGATAAATACAACCACTCCTCTTTATTAAGGGCTCTGACCAT
AGTGAATTTTTCATAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGT
AACCAATGTTTTACATTTTCTGTTAGACAAACTATTCCTGAATCTGAAAA
TTCAAAAATTGCATTGAAAAAATTTGATGAAGAAGAAAATGAAGACTTTT
GCGAGNNNNNNNNNNNNNNNNNTGCATTGAAAAAATTTGATGAAGAAGAA
AATGAAGACTTTTGCGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTT
CGGCGAAGAAAAAACATTTAAAAAATTTTTTCGCAGTAGATGGTGTATCT
TTTATCGAACAATAAAAATTTTTGCGGAACATTTTTGTAAATATAGAATT
TGTCTTTTCATCTCGAAGAGATTAGTCTGAAATTTGTCGTTTGAGTACGT
CTGACATTCCAATTTTTTTATTTCCCAAAAGGTCAACATCCCCCTCAGAG
AAGACAAGTAGTCCAATCACAACGCAACAACAAGAAGAGCCCTCTTCTCA
ATCATCACCTGAACAAGAAGAAAGTGAAAAAATGAAAACGGACGAGGAAA
CACCCAGCGCAGTCGAAACGCCCGCCGCCCTTGTTTCGGAAGGTGGTAAC
CAGCAAAAAGAAGACTNAAACGCCCGCCGCCCTTATTTCGGAAGGTGGTA
ATCAGCAAAAAGAAGACTCTGTTACGCCATCTACTTCAACAGACAATATT
GAAACAACTAGCTCGCTACCTCAAGCTAATGCAAGGTATTATGGCTTGCT
CAATTTCTAGACTCCTCTTTAAATTATACTGATTCAAATCCTATTACTTT
GTCAGTCAAGAACTCGAGGAGAAGAAGTAAAGTGATTTAAAAGTGAACTG
GCTTTTTCGAAAAGCTTTAATTTGGAAAGCTAACTTTTTAGTCAGACGAC
TTACAGTCGTTTCAAGATCAAGTATCCCCTTCTCTAATGTCTAGTGTCCA
TGCCTATTCCAGTCTAGCTATTGTTCAAGGTCGCTATTGTCCGCTTCGAC
TTTTAGACATTGGCGTGTGTACATTTTCCATGTTGTTAAATTTTCCTTTT
CTCGTGTTTTTAGCCAATCAGACGATCTTTCACCTAAGGGAGATAACACA
GAGAATCGCAGCAGTCCAACTCCTGAAAATCCATCTTCATCTTCGTCAAA
AAATGATGGAGATAATAAAAAAAGTGAAGAAACAAAAATTGAAAGCTCTT
CTTCAAACGAAACGACGAAAAAAGACGAAAATAGGTAGGAATTGAACTGA
ACGCCTATTTTTCCAAAAATTTCTGGTTTAGTTTCTTACTCGGCTGAAAC
TCTCGCAAGAAACGTCCCCCGTAAAGCGTGAAACAACCATTTTAGAAACA
GGGATTTGGTCCCTTTCCCGCACTATGGTATAATTAGTTACGTTTTTATT
ACATCTCAGTGATCCGATGACATAATGAGTACATAACAAATCAAATGATG
GAATAAAAGGGACTTCTGTGAAATGATCGATGGATATTTCATCGTTCGCT
TGATTGCTATGAGGTGGTATATCATAAGTGTTCAAAGATGGAAATAAACG
AACTTTTGAATGCAAATATTTTCCTGGTGAAAGACTGTGAAATAAAGTTG
GCTTTTGGAGAGCGTGGGTTTGTATTTAATGTTTGTATAAGTGAGGAAGA
ACTCATGCACAAGATTACCTGGAGTAAGCGAAGCAATAGTTGATTATGAA
GTTTTCGATCCTAATTATTATAATACCGGGTGTCAGACACTGTCCGGACT
TCTGGTTGTTCGGTCAAGGACTGGAAGATTAACTTGAGTATATGATTCTT
TTATATGAAAAGAAAGTCAACATGCCAGAGCAATTGAAAGGAATAGAAAA
AAAGCGCTTCTCTGATTACCCAAAATGTTCTGATCTTTTCTATTGAAAAC
TCCTTTGTTTTAGCTTTAATTAGGTAGGTGATGAAAGTTTAGAAAAAAAC
GGCTTGTCGTGCGAAGAGGGCTGGTTTCTATATGGCTATGTCTATAAAAG
CGGATTGTTTTTGTTTGTTTTTGGTCCATTACTCTTGAACTTTCAGTATC
CAGTAACAAATTTTAATCTAACTTGTAGTCGGAAAAATTCTCATCACGAT
GATATCAAGTTACTTCGAGAAATTAAAACAGATTTAATTTCTTAATTTTT
GGCACTATAGCTTTTTATCTAATTATGTCGTCGTGATGCCGTTATATCAT
TAGAAGCGCTAGAATATTCTGACCAAGAAAATATAGGTATATTTTGGTCT
GAGCGAGCTGTTCCCAAAATATAAGCATAATTAGACTCAAAACAAAAGAA
TTTCGCGACATCACGCTAACTATGCAGATTTTTTATTATCAACAAAAGAA
ATCCATTAACCGAAAAAAACTCCTTTATGGGCAAAGGACCTGGTATACAT
GACGAGCCGTATTTCCATTGTTTTCAAGAAGCTGTTTTTCTATTTCCTTT
ACACTTCTCTGGACACATACACCTTGAAAGATATGAAATTATTTTATTCT
ACCAAAATAATAAACGAGATCTGTATAAACATTTTTCAATGTAGAAGTTA
TTTTTTGCCTGTTTTGGTGTCTTTCCTTTTTTTTTCAAAATTAAAAATAT
AAATTTTCCAAATCTTTTTTTCTCCAGTTTTTATGTTTGAAGATTTTAAA
AATTTTGCTCAGTTTTTTTTCTTCGTATTTATGTTTCTTGGCAGTCAAAT
ACTGCACGGTTTTCCAATATCAACCTCTATGATCTTCAAATTTTGATCTC
GGAGTAATTGCCCCTAGACGAGCAGTTTAAAGCTTTCAATTCGATCATTC
GTTTTCTCAAATACCTGCCTAACATAAAGTTGGAGGTCCGAACTGTTCAC
CTAACTGGTTTATCGAGGTCTTTCGTAAATTATTATTTGCTATGATAAGT
TCCTTGATTGTCTGTAAAATATTTCGAAAAAAAAACACATGGACAGGAAA
CTTTTTTGATATATTATATAATTTATAATTTTTTCTTTTATGAAAATTTT
ATTAATTGAGTAATAACGATAATAAAAACCGTACATCAAACTTACAAATA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033287XLOC_033287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052682-exon-scaffold_218-1575043694:776720..776777TCONS_00052682-exon-scaffold_218-1575043694:776720..776777Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:775698..775879TCONS_00052682-exon-scaffold_218-1575043694:775698..775879Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:775023..775182TCONS_00052682-exon-scaffold_218-1575043694:775023..775182Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:774535..774620TCONS_00052682-exon-scaffold_218-1575043694:774535..774620Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:774216..774261TCONS_00052682-exon-scaffold_218-1575043694:774216..774261Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:773536..773696TCONS_00052682-exon-scaffold_218-1575043694:773536..773696Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:773393..773483TCONS_00052682-exon-scaffold_218-1575043694:773393..773483Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:772894..773064TCONS_00052682-exon-scaffold_218-1575043694:772894..773064Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1575043694:771077..772718TCONS_00052682-exon-scaffold_218-1575043694:771077..772718Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:776720..776777TCONS_00052682-exon-scaffold_218-1510915933:776720..776777Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:775698..775879TCONS_00052682-exon-scaffold_218-1510915933:775698..775879Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:775023..775182TCONS_00052682-exon-scaffold_218-1510915933:775023..775182Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:774535..774620TCONS_00052682-exon-scaffold_218-1510915933:774535..774620Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:774216..774261TCONS_00052682-exon-scaffold_218-1510915933:774216..774261Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:773536..773696TCONS_00052682-exon-scaffold_218-1510915933:773536..773696Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:773393..773483TCONS_00052682-exon-scaffold_218-1510915933:773393..773483Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:772894..773064TCONS_00052682-exon-scaffold_218-1510915933:772894..773064Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1510915933:771077..772718TCONS_00052682-exon-scaffold_218-1510915933:771077..772718Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:776720..776777TCONS_00052682-exon-scaffold_218-1491911889:776720..776777Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:775698..775879TCONS_00052682-exon-scaffold_218-1491911889:775698..775879Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:775023..775182TCONS_00052682-exon-scaffold_218-1491911889:775023..775182Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:774535..774620TCONS_00052682-exon-scaffold_218-1491911889:774535..774620Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:774216..774261TCONS_00052682-exon-scaffold_218-1491911889:774216..774261Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:773536..773696TCONS_00052682-exon-scaffold_218-1491911889:773536..773696Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:773393..773483TCONS_00052682-exon-scaffold_218-1491911889:773393..773483Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:772894..773064TCONS_00052682-exon-scaffold_218-1491911889:772894..773064Clytia hemisphaericaexon
TCONS_00052682-exon-scaffold_218-1491911889:771077..772718TCONS_00052682-exon-scaffold_218-1491911889:771077..772718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:771077..776777 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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