TCONS_00052687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052687
Unique NameTCONS_00052687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length837

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052687 ID=TCONS_00052687|Name=TCONS_00052687|organism=Clytia hemisphaerica|type=transcript|length=837bp
aaacagctcacaagatttttgcttggttaatatctttttaacgtagttgc
tcaaAACTAAAACTAGATTTAGttgagggacattgtttgctactgaatga
ataactattaaactactgatattggatcaaaccttatacgatTGTCGTCA
GAAATGGATGACATCTTCAATTGGTTCAATCAAATGTACAATGAATGACA
GTGTGTTTTACACACACAGTCTGACAGTGTCTGGACAGTTTTATACGCTG
CTCTACCGAAACCCTACTGAACCCAGTACCCTATATATGGATATTGCATG
cgccgaaagtaatttttcaaagagtaatCCTTGCGCCGCCGCCAAAACGT
GCTAAAAACTGATGataccaacattgagtttcttaCAGAAGATTTAGTGA
GTGAGACATGCCAATGAGAATATACTATGACTAACATGGAACTGATTAat
tctcgtggacatttgaagcacaatgttacagcaaaaaaatggtTGAGCAT
GGGGAGCAGCGAagcagcgagcagaaaaatgtaaacagaagcggaacaAA
CAGTCGAGTACTGAGCGATCTTTTCAAGTCATCtctatacaaaaaagaaa
agcaaaaagaccTATCGAATGAGAACATCATAATGTTCCACCGCAGAGTA
ACTTGTGTTTTGAATCTATCAAAGCAATTAAAACACTAGAAATCTTCAAA
TCCCACGATATCCAAAAACTCGAGAGCACGCAAGCAAATTGATTTTGCAA
CGGTataaattgaaacttgaaaatgttattaacaCTTAGTTAATTGGCAT
AATTAGTGAGATTAGAtataatttgatcatttttccg
Run BLAST on NCBI

transcript from alignment at scaffold_218:31419..32255

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052687 ID=TCONS_00052687|Name=TCONS_00052687|organism=Clytia hemisphaerica|type=transcript|length=837bp|location=Sequence derived from alignment at scaffold_218:31419..32255 (Clytia hemisphaerica)
cggaaaaatgatcaaattataTCTAATCTCACTAATTATGCCAATTAACT
AAGtgttaataacattttcaagtttcaatttatACCGTTGCAAAATCAAT
TTGCTTGCGTGCTCTCGAGTTTTTGGATATCGTGGGATTTGAAGATTTCT
AGTGTTTTAATTGCTTTGATAGATTCAAAACACAAGTTACTCTGCGGTGG
AACATTATGATGTTCTCATTCGATAggtctttttgcttttcttttttgta
tagaGATGACTTGAAAAGATCGCTCAGTACTCGACTGTTtgttccgcttc
tgtttacatttttctgctcgctgctTCGCTGCTCCCCATGCTCAaccatt
tttttgctgtaacattgtgcttcaaatgtccacgagaatTAATCAGTTCC
ATGTTAGTCATAGTATATTCTCATTGGCATGTCTCACTCACTAAATCTTC
TGtaagaaactcaatgttggtatCATCAGTTTTTAGCACGTTTTGGCGGC
GGCGCAAGGattactctttgaaaaattactttcggcgCATGCAATATCCA
TATATAGGGTACTGGGTTCAGTAGGGTTTCGGTAGAGCAGCGTATAAAAC
TGTCCAGACACTGTCAGACTGTGTGTGTAAAACACACTGTCATTCATTGT
ACATTTGATTGAACCAATTGAAGATGTCATCCATTTCTGACGACAatcgt
ataaggtttgatccaatatcagtagtttaatagttattcattcagtagca
aacaatgtccctcaaCTAAATCTAGTTTTAGTTttgagcaactacgttaa
aaagatattaaccaagcaaaaatcttgtgagctgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033291XLOC_033291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052687-exon-scaffold_218-1491911889:31419..32255TCONS_00052687-exon-scaffold_218-1491911889:31419..32255Clytia hemisphaericaexon
TCONS_00052687-exon-scaffold_218-1510915933:31419..32255TCONS_00052687-exon-scaffold_218-1510915933:31419..32255Clytia hemisphaericaexon
TCONS_00052687-exon-scaffold_218-1575043694:31419..32255TCONS_00052687-exon-scaffold_218-1575043694:31419..32255Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:31419..32255 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81225	4.11984	6.31892	5.45316	19.7481	13.1331	9.62162	9.20633	3.85472	5.9302	5.51172	5.50568	8.39979	6.34584	4.73679	6.10029	6.12871	5.16092	10.1008	11.7995	5.54761	6.32588	3.53114	4.3141	5.32308	7.15713	5.84289	5.98934	6.25798	5.46334
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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