TCONS_00052688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052688
Unique NameTCONS_00052688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052688 ID=TCONS_00052688|Name=TCONS_00052688|organism=Clytia hemisphaerica|type=transcript|length=444bp
aaaatgagaatttttttttcagttaatgCGGCAAGTGTGTAGAGATTGTT
TGATAAACGAAAATTGAAGCCGCTAGACTACAGGTGTTTGTAAACGAAAA
GAACAAACACCTGTTTAAACAAAACGAACGATGTTTGTATATTAGATCAG
AGTTTAATTCTAGATAGACGCTGCTGATCTAATCGCGTGGGTTGCGAAAT
TCGATAGGAATTCGCTCATGCAGTGGCTAATTTTGAGTGTAGTATGCCGA
GTGACGAGATCTGTCGACTAATGGGTCCAGGCACTCTACCTGAAATTAAA
CATATGCGTTCAAgtttttcaagagatttttaaatttgaccttttCTCAG
TATCTTTcaggaatttttttatgaaaaaagaagCAATGACGTACAAGGTA
AATTACGCAAACTCCGTAAGTATTCTAAAAGTACCGCAGGCATC
Run BLAST on NCBI

transcript from alignment at scaffold_218:104744..105187

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052688 ID=TCONS_00052688|Name=TCONS_00052688|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at scaffold_218:104744..105187 (Clytia hemisphaerica)
GATGCCTGCGGTACTTTTAGAATACTTACGGAGTTTGCGTAATTTACCTT
GTACGTCATTGcttcttttttcataaaaaaattcctgAAAGATACTGAGa
aaaggtcaaatttaaaaatctcttgaaaaacTTGAACGCATATGTTTAAT
TTCAGGTAGAGTGCCTGGACCCATTAGTCGACAGATCTCGTCACTCGGCA
TACTACACTCAAAATTAGCCACTGCATGAGCGAATTCCTATCGAATTTCG
CAACCCACGCGATTAGATCAGCAGCGTCTATCTAGAATTAAACTCTGATC
TAATATACAAACATCGTTCGTTTTGTTTAAACAGGTGTTTGTTCTTTTCG
TTTACAAACACCTGTAGTCTAGCGGCTTCAATTTTCGTTTATCAAACAAT
CTCTACACACTTGCCGcattaactgaaaaaaaaattctcatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033292XLOC_033292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052688-exon-scaffold_218-1491911889:104744..105187TCONS_00052688-exon-scaffold_218-1491911889:104744..105187Clytia hemisphaericaexon
TCONS_00052688-exon-scaffold_218-1510915933:104744..105187TCONS_00052688-exon-scaffold_218-1510915933:104744..105187Clytia hemisphaericaexon
TCONS_00052688-exon-scaffold_218-1575043694:104744..105187TCONS_00052688-exon-scaffold_218-1575043694:104744..105187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:104744..105187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.197717	0.0449682	0.167233	0.565246	0.379114	3.12086	2.48732	1.64595	0.978723	2.96553	1.45025	2.88891	3.77618	1.8794	2.01031	3.74768	2.94077	0	0.335869	0.829106	1.12933	0	0.379783	2.78213	3.30018	0.278563	0.376542	2.04738	2.6591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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