TCONS_00052689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052689
Unique NameTCONS_00052689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052689 ID=TCONS_00052689|Name=TCONS_00052689|organism=Clytia hemisphaerica|type=transcript|length=755bp
TCCTGTAAAACAGGGAGGGGTTGTTCTTTCTATGGTTGAGTCCAAATTAT
GGATTTTGGGGATTATATCATAACattgtacatttttttttagttttcgt
CTTTCAATACAAGTTTATAAAACAAAGTTTAGAGAATTAATagtcgaaag
aaaaaaaagcccGCAATGCAGGGTATTATTTTCACTACACAGATTGGCGC
AGCCTTCTTGCTGAACTATGTCTTAATTTTCAGATGCTCAAAATAGTTCA
TTAAATTTTAGACCTTTTTCCTTTTGATCATTTTAGGCGCCAACTTTATT
TAAAACCTACCAAAAATAccgataaaaatgacaaaaaaattgtataaagc
ttttcaaaaagggaCTCAATCGGTGGTGTATTTCTTTTACGaatttattc
aattgtcattttcatatggttttcttctttttcagccGTTCAATTAACAA
ACGAGATAATTGTCTTCTTCGTTTGCTTGCTCTTGCTTCTTCTTGTCTTT
TTGCTTCGTTTGGATGTATCATATCCTCCACAATATATTGTATCCTTTGG
TATAACTTTGCTTCTCTCATGTGAATAGATGACGGAGATAATGAAAACCT
GTTGTTGAGCTCCCTTTTTCCGAGTGTAAAGTGTGCGCTGATGATGAGCG
GACAGGCGATTGTGACCAGAATAATAACTTGTTGACGCAACATTGATTTT
TGTATTACTGtcaataaaaaggaaaattaaacAAGGTGAATTAATATCAG
GAAAG
Run BLAST on NCBI

protein sequence of TCONS_00052689-protein

>TCONS_00052689-protein ID=TCONS_00052689-protein|Name=TCONS_00052689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
FPDINSPCLIFLFIDSNTKINVASTSYYSGHNRLSAHHQRTLYTRKKGAQ
QQVFIISVIYSHERSKVIPKDTIYCGGYDTSKRSKKTRRSKSKQTKKTII
SFVN
Run BLAST on NCBI

transcript from alignment at scaffold_218:153456..154210

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052689 ID=TCONS_00052689|Name=TCONS_00052689|organism=Clytia hemisphaerica|type=transcript|length=755bp|location=Sequence derived from alignment at scaffold_218:153456..154210 (Clytia hemisphaerica)
CTTTCCTGATATTAATTCACCTTgtttaattttcctttttattgaCAGTA
ATACAAAAATCAATGTTGCGTCAACAAGTTATTATTCTGGTCACAATCGC
CTGTCCGCTCATCATCAGCGCACACTTTACACTCGGAAAAAGGGAGCTCA
ACAACAGGTTTTCATTATCTCCGTCATCTATTCACATGAGAGAAGCAAAG
TTATACCAAAGGATACAATATATTGTGGAGGATATGATACATCCAAACGA
AGCAAAAAGACAAGAAGAAGCAAGAGCAAGCAAACGAAGAAGACAATTAT
CTCGTTTGTTAATTGAACggctgaaaaagaagaaaaccatatgaaaatga
caattgaataaattCGTAAAAGAAATACACCACCGATTGAGtcccttttt
gaaaagctttatacaatttttttgtcatttttatcggTATTTTTGGTAGG
TTTTAAATAAAGTTGGCGCCTAAAATGATCAAAAGGAAAAAGGTCTAAAA
TTTAATGAACTATTTTGAGCATCTGAAAATTAAGACATAGTTCAGCAAGA
AGGCTGCGCCAATCTGTGTAGTGAAAATAATACCCTGCATTGCgggcttt
tttttctttcgactATTAATTCTCTAAACTTTGTTTTATAAACTTGTATT
GAAAGacgaaaactaaaaaaaaatgtacaatGTTATGATATAATCCCCAA
AATCCATAATTTGGACTCAACCATAGAAAGAACAACCCCTCCCTGTTTTA
CAGGA

Coding sequence (CDS) from alignment at scaffold_218:153456..154210

>TCONS_00052689 ID=TCONS_00052689|Name=TCONS_00052689|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_218:153456..154210 (Clytia hemisphaerica)
TTTCCTGATATTAATTCACCTTgtttaattttcctttttattgaCAGTAA
TACAAAAATCAATGTTGCGTCAACAAGTTATTATTCTGGTCACAATCGCC
TGTCCGCTCATCATCAGCGCACACTTTACACTCGGAAAAAGGGAGCTCAA
CAACAGGTTTTCATTATCTCCGTCATCTATTCACATGAGAGAAGCAAAGT
TATACCAAAGGATACAATATATTGTGGAGGATATGATACATCCAAACGAA
GCAAAAAGACAAGAAGAAGCAAGAGCAAGCAAACGAAGAAGACAATTATC
TCGTTTGTTAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033293XLOC_033293Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052689-proteinTCONS_00052689-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052689-exon-scaffold_218-1491911889:153456..154210TCONS_00052689-exon-scaffold_218-1491911889:153456..154210Clytia hemisphaericaexon
TCONS_00052689-exon-scaffold_218-1510915933:153456..154210TCONS_00052689-exon-scaffold_218-1510915933:153456..154210Clytia hemisphaericaexon
TCONS_00052689-exon-scaffold_218-1575043694:153456..154210TCONS_00052689-exon-scaffold_218-1575043694:153456..154210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:153456..154210 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0735709	0.215933	0.0876259	0.0692431	4.42756	5.23994	7.44673	5.76498	2.04076	5.27951	0.259287	0.134636	0	0.118786	1.8048	2.84979	0.207218	1.59015	14.261	12.1348	3.27809	6.77331	3.55794	4.66967	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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