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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052696 ID=TCONS_00052696|Name=TCONS_00052696|organism=Clytia hemisphaerica|type=transcript|length=1712bp
CAAGTTACGCACCTATTGGAGTAGCGAGCGAAACTGAATGGGAAAATTTC
CTTGACTGTCTTGATTTATGTATATCCAAAAAGAAGCCCCATGACATTCT
TATAATTGGGTCAGATACTAACTCTAGTTTGGGATGTAGTACGCAACTAG
ATGATGGTTACTCCATTGGAAAGTTTGGTTTAAAACACTGTAATGAGTCT
GGTCGTCGATTCTCTTCCTACCTTGCGATAAATAACTTTCTTGCCACCAc
aacttgttttcaaaaaaacaactaTGCTACCTGGATTCATCCCCGCTCGA
AAATGAAGCATCAGATCGACCACTTTATTACCAAGAAAGAGAACTTCAAA
CATGTAATGGATGCAGGTGTTACCTTACCACTTATCGATTCAGACCACAC
TGCGATTAAGTGTATATTACGTTTCATTGTTCGACTAAAGAAGAAATCTT
CACCGAGAGAACGTTTAGTTAAACTCGATTATACCAGACTCAAAATCGTC
TCCGAAAGAAATCGTTTTTGTGCCAAGGTTAAAAACTTATATGATGAGAA
CACTTCTATTGATAATTCCTACAGCAAGGCTGCTGACGCAATCATGAAAG
TATCGCATGAAATGCTACCCAGAGCCAAAAAACCCTCCCCTGGCTGGTTT
CAAGCCGCACAAAATAAACTTTTACCTCTTATCGAACAAAGAAATAAGGC
TTTGATGAGAAAAATCAACCGACCTCTTCGTTCAACTACTCAAAGATTAC
ACACTGCACGCAAAAGCCTCAAAAACGCAGTCTCAAAAGCAAAGAATGAA
TGGATCGTATCTCACTGCAACGAATTGAATAACGTCACTAAAGGAGGTAC
GAAACGTTTTTGGGACACTGTAAATAAACTAAAATCTGGTTTGACTAAAG
TTAAAACTAGTAATGAACGAGCTATGAAAAAACCAAATGGACAGTTATGT
ACAACGCCTGAAGAAAATGCCACTGTTTTCCAAAGTCATTTTCAACAACT
TTATGAACGGCAACCTGATTTTGACGCCTCAGTATTGAGTTCACTTGTTT
CTaaaaaaactgttgaaaatctTGATTATCACCCAGATGGTGATGAGATA
CGAAAAGCTGTCCGTAACCTAAAGGAACGTGCTCCTGGTGATTCTGGTAT
TACTCCTCAAGTGTGGAAAGCACTGGTCGAAAATGAATctacttttaaaa
tattacaaACAATAGTCATTGACTTTTGGGACTCTGAAAAGCCCCCATCT
GAATGGGATACTGGTCTCCTGAAAATCCTTCCAAAAAAAGGAGACCTCAG
CCTACCAGGCAATTACCGTGGCATCATGCTTCTTGAGTCAGCCTATAAAA
TCATTGCGATCATACTTCATAACAGGCTCAGCCCGATTGTCGAGTCACTC
GATCATGAACCCCAATGTGGATTCCGTCCAGGCCGAGGGTGTGTCGATGG
CATCTTTACAGTTAAGATGGCCATGAAGAAAAGAAGGGAACACGGCTTGG
AAACCTGGATCCTCTTTCTCGATCTTGTCAAGGCCTTCGACCGAGTGCCA
CGCGAGCTACTCTGGGAAGTTTTGGACATCTTTGGTGTACCTGCAAAGTT
AATTCGGCTTTTGAAAGCTCTCCATGCCAATGTTGAAGTAAAGTTTGTCG
TTAACGATATTACCAAAAGAATCGATAGTATCATCGGTGTTAAGCAGGGT
GACATATTGGGG Run BLAST on NCBI protein sequence of TCONS_00052696-protein >TCONS_00052696-protein ID=TCONS_00052696-protein|Name=TCONS_00052696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp
SYAPIGVASETEWENFLDCLDLCISKKKPHDILIIGSDTNSSLGCSTQLD
DGYSIGKFGLKHCNESGRRFSSYLAINNFLATTTCFQKNNYATWIHPRSK
MKHQIDHFITKKENFKHVMDAGVTLPLIDSDHTAIKCILRFIVRLKKKSS
PRERLVKLDYTRLKIVSERNRFCAKVKNLYDENTSIDNSYSKAADAIMKV
SHEMLPRAKKPSPGWFQAAQNKLLPLIEQRNKALMRKINRPLRSTTQRLH
TARKSLKNAVSKAKNEWIVSHCNELNNVTKGGTKRFWDTVNKLKSGLTKV
KTSNERAMKKPNGQLCTTPEENATVFQSHFQQLYERQPDFDASVLSSLVS
KKTVENLDYHPDGDEIRKAVRNLKERAPGDSGITPQVWKALVENESTFKI
LQTIVIDFWDSEKPPSEWDTGLLKILPKKGDLSLPGNYRGIMLLESAYKI
IAIILHNRLSPIVESLDHEPQCGFRPGRGCVDGIFTVKMAMKKRREHGLE
TWILFLDLVKAFDRVPRELLWEVLDIFGVPAKLIRLLKALHANVEVKFVV
NDITKRIDSIIGVKQGDILG Run BLAST on NCBI transcript from alignment at scaffold_218:279426..281137 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052696 ID=TCONS_00052696|Name=TCONS_00052696|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at scaffold_218:279426..281137 (Clytia hemisphaerica)
CCCCAATATGTCACCCTGCTTAACACCGATGATACTATCGATTCTTTTGG
TAATATCGTTAACGACAAACTTTACTTCAACATTGGCATGGAGAGCTTTC
AAAAGCCGAATTAACTTTGCAGGTACACCAAAGATGTCCAAAACTTCCCA
GAGTAGCTCGCGTGGCACTCGGTCGAAGGCCTTGACAAGATCGAGAAAGA
GGATCCAGGTTTCCAAGCCGTGTTCCCTTCTTTTCTTCATGGCCATCTTA
ACTGTAAAGATGCCATCGACACACCCTCGGCCTGGACGGAATCCACATTG
GGGTTCATGATCGAGTGACTCGACAATCGGGCTGAGCCTGTTATGAAGTA
TGATCGCAATGATTTTATAGGCTGACTCAAGAAGCATGATGCCACGGTAA
TTGCCTGGTAGGCTGAGGTCTCCTTTTTTTGGAAGGATTTTCAGGAGACC
AGTATCCCATTCAGATGGGGGCTTTTCAGAGTCCCAAAAGTCAATGACTA
TTGTttgtaatattttaaaagtagATTCATTTTCGACCAGTGCTTTCCAC
ACTTGAGGAGTAATACCAGAATCACCAGGAGCACGTTCCTTTAGGTTACG
GACAGCTTTTCGTATCTCATCACCATCTGGGTGATAATCAagattttcaa
cagtttttttAGAAACAAGTGAACTCAATACTGAGGCGTCAAAATCAGGT
TGCCGTTCATAAAGTTGTTGAAAATGACTTTGGAAAACAGTGGCATTTTC
TTCAGGCGTTGTACATAACTGTCCATTTGGTTTTTTCATAGCTCGTTCAT
TACTAGTTTTAACTTTAGTCAAACCAGATTTTAGTTTATTTACAGTGTCC
CAAAAACGTTTCGTACCTCCTTTAGTGACGTTATTCAATTCGTTGCAGTG
AGATACGATCCATTCATTCTTTGCTTTTGAGACTGCGTTTTTGAGGCTTT
TGCGTGCAGTGTGTAATCTTTGAGTAGTTGAACGAAGAGGTCGGTTGATT
TTTCTCATCAAAGCCTTATTTCTTTGTTCGATAAGAGGTAAAAGTTTATT
TTGTGCGGCTTGAAACCAGCCAGGGGAGGGTTTTTTGGCTCTGGGTAGCA
TTTCATGCGATACTTTCATGATTGCGTCAGCAGCCTTGCTGTAGGAATTA
TCAATAGAAGTGTTCTCATCATATAAGTTTTTAACCTTGGCACAAAAACG
ATTTCTTTCGGAGACGATTTTGAGTCTGGTATAATCGAGTTTAACTAAAC
GTTCTCTCGGTGAAGATTTCTTCTTTAGTCGAACAATGAAACGTAATATA
CACTTAATCGCAGTGTGGTCTGAATCGATAAGTGGTAAGGTAACACCTGC
ATCCATTACATGTTTGAAGTTCTCTTTCTTGGTAATAAAGTGGTCGATCT
GATGCTTCATTTTCGAGCGGGGATGAATCCAGGTAGCAtagttgtttttt
tgaaaacaagttgTGGTGGCAAGAAAGTTATTTATCGCAAGGTAGGAAGA
GAATCGACGACCAGACTCATTACAGTGTTTTAAACCAAACTTTCCAATGG
AGTAACCATCATCTAGTTGCGTACTACATCCCAAACTAGAGTTAGTATCT
GACCCAATTATAAGAATGTCATGGGGCTTCTTTTTGGATATACATAAATC
AAGACAGTCAAGGAAATTTTCCCATTCAGTTTCGCTCGCTACTCCAATAG
GTGCGTAACTTG Coding sequence (CDS) from alignment at scaffold_218:279426..281137 >TCONS_00052696 ID=TCONS_00052696|Name=TCONS_00052696|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_218:279426..281137 (Clytia hemisphaerica)
CCCCAATATGTCACCCTGCTTAACACCGATGATACTATCGATTCTTTTGG
TAATATCGTTAACGACAAACTTTACTTCAACATTGGCATGGAGAGCTTTC
AAAAGCCGAATTAACTTTGCAGGTACACCAAAGATGTCCAAAACTTCCCA
GAGTAGCTCGCGTGGCACTCGGTCGAAGGCCTTGACAAGATCGAGAAAGA
GGATCCAGGTTTCCAAGCCGTGTTCCCTTCTTTTCTTCATGGCCATCTTA
ACTGTAAAGATGCCATCGACACACCCTCGGCCTGGACGGAATCCACATTG
GGGTTCATGATCGAGTGACTCGACAATCGGGCTGAGCCTGTTATGAAGTA
TGATCGCAATGATTTTATAGGCTGACTCAAGAAGCATGATGCCACGGTAA
TTGCCTGGTAGGCTGAGGTCTCCTTTTTTTGGAAGGATTTTCAGGAGACC
AGTATCCCATTCAGATGGGGGCTTTTCAGAGTCCCAAAAGTCAATGACTA
TTGTttgtaatattttaaaagtagATTCATTTTCGACCAGTGCTTTCCAC
ACTTGAGGAGTAATACCAGAATCACCAGGAGCACGTTCCTTTAGGTTACG
GACAGCTTTTCGTATCTCATCACCATCTGGGTGATAATCAagattttcaa
cagtttttttAGAAACAAGTGAACTCAATACTGAGGCGTCAAAATCAGGT
TGCCGTTCATAAAGTTGTTGAAAATGACTTTGGAAAACAGTGGCATTTTC
TTCAGGCGTTGTACATAACTGTCCATTTGGTTTTTTCATAGCTCGTTCAT
TACTAGTTTTAACTTTAGTCAAACCAGATTTTAGTTTATTTACAGTGTCC
CAAAAACGTTTCGTACCTCCTTTAGTGACGTTATTCAATTCGTTGCAGTG
AGATACGATCCATTCATTCTTTGCTTTTGAGACTGCGTTTTTGAGGCTTT
TGCGTGCAGTGTGTAATCTTTGAGTAGTTGAACGAAGAGGTCGGTTGATT
TTTCTCATCAAAGCCTTATTTCTTTGTTCGATAAGAGGTAAAAGTTTATT
TTGTGCGGCTTGAAACCAGCCAGGGGAGGGTTTTTTGGCTCTGGGTAGCA
TTTCATGCGATACTTTCATGATTGCGTCAGCAGCCTTGCTGTAGGAATTA
TCAATAGAAGTGTTCTCATCATATAAGTTTTTAACCTTGGCACAAAAACG
ATTTCTTTCGGAGACGATTTTGAGTCTGGTATAATCGAGTTTAACTAAAC
GTTCTCTCGGTGAAGATTTCTTCTTTAGTCGAACAATGAAACGTAATATA
CACTTAATCGCAGTGTGGTCTGAATCGATAAGTGGTAAGGTAACACCTGC
ATCCATTACATGTTTGAAGTTCTCTTTCTTGGTAATAAAGTGGTCGATCT
GATGCTTCATTTTCGAGCGGGGATGAATCCAGGTAGCAtagttgtttttt
tgaaaacaagttgTGGTGGCAAGAAAGTTATTTATCGCAAGGTAGGAAGA
GAATCGACGACCAGACTCATTACAGTGTTTTAAACCAAACTTTCCAATGG
AGTAACCATCATCTAGTTGCGTACTACATCCCAAACTAGAGTTAGTATCT
GACCCAATTATAAGAATGTCATGGGGCTTCTTTTTGGATATACATAAATC
AAGACAGTCAAGGAAATTTTCCCATTCAGTTTCGCTCGCTACTCCAATAG
GTGCGTAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052696-exon-scaffold_218-1491911889:279426..281137 | TCONS_00052696-exon-scaffold_218-1491911889:279426..281137 | Clytia hemisphaerica | exon |
| TCONS_00052696-exon-scaffold_218-1510915933:279426..281137 | TCONS_00052696-exon-scaffold_218-1510915933:279426..281137 | Clytia hemisphaerica | exon |
| TCONS_00052696-exon-scaffold_218-1575043694:279426..281137 | TCONS_00052696-exon-scaffold_218-1575043694:279426..281137 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:279426..281137 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052696 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.502e-16 Identity = 108/480 (22.50%), Postives = 200/480 (41.67%), Query Frame = 3
Query: 312 QIDHFITKKENFKHVMDAGVTLPLIDSDHTAIKCILRFIVRLKKKSSPRERLVKLDYTRLKIVSERNRFCAKVKNLYDENTSIDNSYSKAADAIMKVSHEMLPRAKKPSPGWFQAAQNKLLPLIEQRNKALMRKINRPLRSTTQRLHTARKSLKNAVSKAKNEWIVSHCNELNNVTKGGTKR--------FWDTVNKLKSGLTK-VKTSNER----AMKKPNGQLCTTPEENATVFQSHFQQLY-------ERQPDFDAXXXXXXXXXXTVENLDYHPDGDEIRKAVRNL-KERAPGDSGITPQVWKALVENESTF--KILQTIVIDFWDSEK----PPSEWDTGLLKILPKKG-DLSLPGNYRGIMLLESAYKIIAIILHNRLSPIVESLDHEPQCGFRPGRGCVDGIFTVKMAMKK----RREHGLETWILFLDLVKAFDRVPRELLWEVLDIFGVPAKLIRLLKALHANVEVKFVVN 1655
+IDH + K + + SDH+AIK LR +K + R KL+ L N A++K ++ N + D +Y DA V + K + L + K KI+ + T +L K + ++ + I EL + T + F++ +NK+ L + +K E+ +K G + T P E T + +++ LY E F + ++++ VE+L+ G EI + +L +++PG G T + ++ E F K+ Q+I EK P S ++ ++ ++PK G D + N+R I L+ KI+ IL NR+ ++ L H Q GF PG + G F ++ ++ R I+ +D KAFD++ + + + L+ G+ +++++A++ ++N
Sbjct: 203 KIDHIVGSKALLSKCKRTEIITNYL-SDHSAIKLELR----IKNLTQSRSTTWKLNNLLLNDYWVHNEMKAEIKMFFETNENKDTTYQNLWDAFKAV------------------CRGKFIALNAYKRKQERSKID----TLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSI-------EKEGILPNSFYEASII-LIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPG---MQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILN 644
The following BLAST results are available for this feature:
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