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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052699 ID=TCONS_00052699|Name=TCONS_00052699|organism=Clytia hemisphaerica|type=transcript|length=3661bp
AATCTGAAGGAGAAACGCGTGGCGTAGCCATGGGTAGTCGATTTTGTTTA
ACCTTTCTACGtaaccttttcttttctttttcagggctctaacaaaaaaa
atactaatCGAAAAATAACACAACAATAATCATTCACCACAATGTTTTTG
ACTATATTTGGGACAATATGCGTTGCAATCTTATCGTATATTTTATTCCA
ATGGCTTCATTTTCAATGGACCGATAAAAGTTGGTTGTACTATGTTCCTC
GCTGCAAACCGTTCTTTGGACATATTCTGTCTTTACATGACCGCAAGTGG
TTTCACCAAGAAAAACCGAATTGGTATCGAAACGGTAACGGAACTTTTGT
TACGCAAATGTTTTCAAAACGTATAATCATTACAATTGATGTGACCATTT
GGGAAGCTCTTTTGTCCAGTCAAAAGTATCTAGATAAAGGACAAGGGTAT
TGGATTTTTAAGAAATTCCTTGGTAATGGCCTTGTAACAAGTTCCGGAGA
TGTTTGGAAGAAACATAGACGAATGATTACCCCtgcttttcattttgaaa
ttttgaacgaGTTTGTTTCCATCATGGAAAATCGGACTTTAGAATTGAtt
gaaatgttgaaaaagtttcaTGAAAAAGATGAATCTTTTAACGCTTTTGA
TATCACTAAACCGTTTTCGTTGAGTATTATTTGTGAAActtcgatgggga
ttgatttaACCATTGACGAGACTAATGCAGGACGCTTTAAAGCTATGTTT
GAGAGTCTAGTTCAAATCCTTTTCAAAAGGTTACTTAATCCTCTTTATAA
AAACGATTGGCTTTATTCGCAAACCAAAAACGGTAAAAGTTACTACTCAA
CACTTACCCAGCTGCGCGGCTTTGTTaaagaaattcttgaaaaaaggaTC
GAAGTTCGAAGGAATCTTGACAAAGCTGAAGAAATGAAACACACTAAACG
AAGGATTTTCATCGATACTTTGTTAGATTCATATGAGAAAGGTGACATTG
ACCTCGATGGGATCCTGGATGAAGTcaatactttcgttttcgctggTTAT
GAGACCACCTCTACTGCTTTAGCCTGGACTTTGTACTGTCTGGGAAGAAA
CCAGAGAATCCAAGACAAGCTTTACAAGGAGATTATAAGCTTTAAGAAAT
CTGGTGATCTTCAAATCGAAGATTTCAAAGAAATGCCTTACCTTGACATG
GTTGTGAAGGAATCATTGCGTCTTCATCCACCAGTTGTACGTTTTGGGCG
CCAAATCAAAAATGGTACCATATTGGCTGGAAGGGAATTTCCTGATTGTG
GTCTGGTTGTTGATATCCCTGGGATGAATCGGAATCCTGAAGTATGGGAA
AATCCACTGACTTTCAATCCTGAACGgtttgaagattttgaattaAAAGG
CAAGCGAAACCCATTTCTTTTCGTTCCTTTTTCAGCTGGTCCTCGTAATT
GCATCGGTCAAAAATTTGCACTCAGTGAGTTGAAAGCAGCGGTCTTTCAT
TTGGTGAAACATTTGGAGTTGATTTCACTTCAAGATGAAAGTGAATTGAT
AGAGACAATGGATCTTACACATGGTTGTGAGAACGGGCCAATGATGAAAG
TGAAACCTCGAAAGTAGATAACCTTACCAAGATTTTAATAGAAGTTATGA
ACCTACTGAGTGATAGATAGGCAGTTTCAATAAATCTCTATTctactcaa
aatttaaaaaaatatttagacaTTTaggaatatttaattttttggaccta
ccccggtggaggtcctataaattaacttgtgttcgtccgtccgtccgtcc
gtccgtccgtccgtccgtccgtccgtccgtccgtccgtccgtccgtccgt
ccgttcgttcgttcgttcgttcgttcgttcgctcgttcgttcgtctgtta
ccaacttttctcaggattgaatcataggaatcttttgatttttggtacaa
aggtgcaaaatggtgttgggcaaaatgtgacggagcccgattttcgaaaa
aaaaaatttttgggcaaatttgggccaaaaaacggctaaaaaacgctTTT
TGGGACTTTGTGAgaaattggatcattgattttttctgattttttgcatg
aaagtagggtaccatcataggtaaaagataacttaggcagatttttgcaa
aaaaattttgttggctcaaaaaacgcatgtttatctataagaatcactat
taattaataagcatacatcaatgttcttagtcaaattactcaattttttt
atgagatggatgttttttttgctcatgagggcttacttttgaagaatatg
tgtgtttagacatgaaattttggttgcttggcgtgttttcatAAAACAAC
TGgctaaattcgatatttttttataagcacattatcaattacttaggtat
tagcttttcttgagattttttgcacaaagatgcgtaactataaaccctcg
aatgtgacggagctcgatttttggaaaaaaaattttgggggtaaatttca
gctaagaAACAGCCAAAAAAAGGGTTCTTTGGacttgtgaaatattggat
cattgtttttttgcatgaaagtaggtaaaagatggctcaagcagattttt
ggaaaaaaagaatttttcagctcaaaaaacgcatgtttatctatataaga
atcactattaataaaagcattcatcaatttttttagtcaaattactcaat
tttttgatgagatagatgtttttttgctcacaaagtcttgaatatgaaag
aatatttcaagagcatgaaaattaggtttctaaacgttttttttataaga
aacaaacgactaatttaaTAGATCTTCACTATtttttgtgttctgaatga
ttgtttaatggtcacgtcacgtagatatcaattataaatgtgttaaatgc
ataatcaggtaggtccataaaagtatcacttgttttaaggatattatctt
ctttttttttatttatttctgggattttattttcaataaagtactttttt
atgaatTCTAGAGACTTCTTGATTTTTTAGCGCATGAGCTATGTTCTTAT
ATGTCAAGttagtgaaggtagagagtctatcaccatttttacctaacacc
ctgcctggaagaGGTTGGGATTCtaacacagtccattgcggtgaaagtct
gtgatcgaaaccttcacactaccaatcggcagaatgttaATGAGATACAG
TGATAGCCTTATCCAGATTCGAACTGTatctcactaacattctgccgatt
ggtTGTGTGAAGGTTCTTATATGTCATTTCCGGAAATTTCCCCAGACTTT
AAAATTGATATACTGTACACAAAGTATCCCGCCTTTGTCCACCAATAAAC
GGGTTGATTTTGCACAAACAGAAATCGATAGATAGATTGGGTCATTACGG
ATAGCCCAATAACCTAGGAGTTTTAGACAGTACTTCGattgttgtttttg
aaaaccacACGGGGTCAAAGAGGGCCAAAAATATTAATCCGAAATATGTG
CATCATAGCTGGGATTTTTGAGTATTAGAGTAAGTGAATTATTTTGTAAG
TGTAATTCTttcttattaattttttagttttcattGTAATCCGTATAAAC
ATTTTGTGTAATCTTTGGATAACCTGCATATtcgtaaaattgaaatattt
ttaaaaatttc Run BLAST on NCBI protein sequence of TCONS_00052699-protein >TCONS_00052699-protein ID=TCONS_00052699-protein|Name=TCONS_00052699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MFLTIFGTICVAILSYILFQWLHFQWTDKSWLYYVPRCKPFFGHILSLHD
RKWFHQEKPNWYRNGNGTFVTQMFSKRIIITIDVTIWEALLSSQKYLDKG
QGYWIFKKFLGNGLVTSSGDVWKKHRRMITPAFHFEILNEFVSIMENRTL
ELIEMLKKFHEKDESFNAFDITKPFSLSIICETSMGIDLTIDETNAGRFK
AMFESLVQILFKRLLNPLYKNDWLYSQTKNGKSYYSTLTQLRGFVKEILE
KRIEVRRNLDKAEEMKHTKRRIFIDTLLDSYEKGDIDLDGILDEVNTFVF
AGYETTSTALAWTLYCLGRNQRIQDKLYKEIISFKKSGDLQIEDFKEMPY
LDMVVKESLRLHPPVVRFGRQIKNGTILAGREFPDCGLVVDIPGMNRNPE
VWENPLTFNPERFEDFELKGKRNPFLFVPFSAGPRNCIGQKFALSELKAA
VFHLVKHLELISLQDESELIETMDLTHGCENGPMMKVKPRK Run BLAST on NCBI transcript from alignment at scaffold_218:338592..342252 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052699 ID=TCONS_00052699|Name=TCONS_00052699|organism=Clytia hemisphaerica|type=transcript|length=3661bp|location=Sequence derived from alignment at scaffold_218:338592..342252 (Clytia hemisphaerica)
gaaatttttaaaaatatttcaattttacgaATATGCAGGTTATCCAAAGA
TTACACAAAATGTTTATACGGATTACaatgaaaactaaaaaattaataag
aaAGAATTACACTTACAAAATAATTCACTTACTCTAATACTCAAAAATCC
CAGCTATGATGCACATATTTCGGATTAATATTTTTGGCCCTCTTTGACCC
CGTgtggttttcaaaaacaacaatCGAAGTACTGTCTAAAACTCCTAGGT
TATTGGGCTATCCGTAATGACCCAATCTATCTATCGATTTCTGTTTGTGC
AAAATCAACCCGTTTATTGGTGGACAAAGGCGGGATACTTTGTGTACAGT
ATATCAATTTTAAAGTCTGGGGAAATTTCCGGAAATGACATATAAGAACC
TTCACACAaccaatcggcagaatgttagtgagatACAGTTCGAATCTGGA
TAAGGCTATCACTGTATCTCATtaacattctgccgattggtagtgtgaag
gtttcgatcacagactttcaccgcaatggactgtgttaGAATCCCAACCt
cttccaggcagggtgttaggtaaaaatggtgatagactctctaccttcac
taaCTTGACATATAAGAACATAGCTCATGCGCTAAAAAATCAAGAAGTCT
CTAGAattcataaaaaagtactttattgaaaataaaatcccagaaataaa
taaaaaaaaagaagataatatccttaaaacaagtgatacttttatggacc
tacctgattatgcatttaacacatttataattgatatctacgtgacgtga
ccattaaacaatcattcagaacacaaaaaATAGTGAAGATCTAttaaatt
agtcgtttgtttcttataaaaaaaacgtttagaaacctaattttcatgct
cttgaaatattctttcatattcaagactttgtgagcaaaaaaacatctat
ctcatcaaaaaattgagtaatttgactaaaaaaattgatgaatgctttta
ttaatagtgattcttatatagataaacatgcgttttttgagctgaaaaat
tctttttttccaaaaatctgcttgagccatcttttacctactttcatgca
aaaaaacaatgatccaatatttcacaagtCCAAAGAACCCTTTTTTTGGC
TGTTtcttagctgaaatttacccccaaaattttttttccaaaaatcgagc
tccgtcacattcgagggtttatagttacgcatctttgtgcaaaaaatctc
aagaaaagctaatacctaagtaattgataatgtgcttataaaaaaatatc
gaatttagcCAGTTGTTTTatgaaaacacgccaagcaaccaaaatttcat
gtctaaacacacatattcttcaaaagtaagccctcatgagcaaaaaaaac
atccatctcataaaaaaattgagtaatttgactaagaacattgatgtatg
cttattaattaatagtgattcttatagataaacatgcgttttttgagcca
acaaaatttttttgcaaaaatctgcctaagttatcttttacctatgatgg
taccctactttcatgcaaaaaatcagaaaaaatcaatgatccaatttcTC
ACAAAGTCCCAAAAagcgttttttagccgttttttggcccaaatttgccc
aaaaattttttttttcgaaaatcgggctccgtcacattttgcccaacacc
attttgcacctttgtaccaaaaatcaaaagattcctatgattcaatcctg
agaaaagttggtaacagacgaacgaacgagcgaacgaacgaacgaacgaa
cgaacgaacggacggacggacggacggacggacggacggacggacggacg
gacggacggacggacggacggacggacgaacacaagttaatttataggac
ctccaccggggtaggtccaaaaaattaaatattcctAAAtgtctaaatat
ttttttaaattttgagtagAATAGAGATTTATTGAAACTGCCTATCTATC
ACTCAGTAGGTTCATAACTTCTATTAAAATCTTGGTAAGGTTATCTACTT
TCGAGGTTTCACTTTCATCATTGGCCCGTTCTCACAACCATGTGTAAGAT
CCATTGTCTCTATCAATTCACTTTCATCTTGAAGTGAAATCAACTCCAAA
TGTTTCACCAAATGAAAGACCGCTGCTTTCAACTCACTGAGTGCAAATTT
TTGACCGATGCAATTACGAGGACCAGCTGAAAAAGGAACGAAAAGAAATG
GGTTTCGCTTGCCTTTtaattcaaaatcttcaaacCGTTCAGGATTGAAA
GTCAGTGGATTTTCCCATACTTCAGGATTCCGATTCATCCCAGGGATATC
AACAACCAGACCACAATCAGGAAATTCCCTTCCAGCCAATATGGTACCAT
TTTTGATTTGGCGCCCAAAACGTACAACTGGTGGATGAAGACGCAATGAT
TCCTTCACAACCATGTCAAGGTAAGGCATTTCTTTGAAATCTTCGATTTG
AAGATCACCAGATTTCTTAAAGCTTATAATCTCCTTGTAAAGCTTGTCTT
GGATTCTCTGGTTTCTTCCCAGACAGTACAAAGTCCAGGCTAAAGCAGTA
GAGGTGGTCTCATAAccagcgaaaacgaaagtattgACTTCATCCAGGAT
CCCATCGAGGTCAATGTCACCTTTCTCATATGAATCTAACAAAGTATCGA
TGAAAATCCTTCGTTTAGTGTGTTTCATTTCTTCAGCTTTGTCAAGATTC
CTTCGAACTTCGAtccttttttcaagaatttctttAACAAAGCCGCGCAG
CTGGGTAAGTGTTGAGTAGTAACTTTTACCGTTTTTGGTTTGCGAATAAA
GCCAATCGTTTTTATAAAGAGGATTAAGTAACCTTTTGAAAAGGATTTGA
ACTAGACTCTCAAACATAGCTTTAAAGCGTCCTGCATTAGTCTCGTCAAT
GGTtaaatcaatccccatcgaagTTTCACAAATAATACTCAACGAAAACG
GTTTAGTGATATCAAAAGCGTTAAAAGATTCATCTTTTTCAtgaaacttt
ttcaacatttcaaTCAATTCTAAAGTCCGATTTTCCATGATGGAAACAAA
CtcgttcaaaatttcaaaatgaaaagcaGGGGTAATCATTCGTCTATGTT
TCTTCCAAACATCTCCGGAACTTGTTACAAGGCCATTACCAAGGAATTTC
TTAAAAATCCAATACCCTTGTCCTTTATCTAGATACTTTTGACTGGACAA
AAGAGCTTCCCAAATGGTCACATCAATTGTAATGATTATACGTTTTGAAA
ACATTTGCGTAACAAAAGTTCCGTTACCGTTTCGATACCAATTCGGTTTT
TCTTGGTGAAACCACTTGCGGTCATGTAAAGACAGAATATGTCCAAAGAA
CGGTTTGCAGCGAGGAACATAGTACAACCAACTTTTATCGGTCCATTGAA
AATGAAGCCATTGGAATAAAATATACGATAAGATTGCAACGCATATTGTC
CCAAATATAGTCAAAAACATTGTGGTGAATGATTATTGTTGTGTTATTTT
TCGattagtattttttttgttagagccctgaaaaagaaaagaaaaggtta
CGTAGAAAGGTTAAACAAAATCGACTACCCATGGCTACGCCACGCGTTTC
TCCTTCAGATT Coding sequence (CDS) from alignment at scaffold_218:338592..342252 >TCONS_00052699 ID=TCONS_00052699|Name=TCONS_00052699|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_218:338592..342252 (Clytia hemisphaerica)
CTACTTTCGAGGTTTCACTTTCATCATTGGCCCGTTCTCACAACCATGTG
TAAGATCCATTGTCTCTATCAATTCACTTTCATCTTGAAGTGAAATCAAC
TCCAAATGTTTCACCAAATGAAAGACCGCTGCTTTCAACTCACTGAGTGC
AAATTTTTGACCGATGCAATTACGAGGACCAGCTGAAAAAGGAACGAAAA
GAAATGGGTTTCGCTTGCCTTTtaattcaaaatcttcaaacCGTTCAGGA
TTGAAAGTCAGTGGATTTTCCCATACTTCAGGATTCCGATTCATCCCAGG
GATATCAACAACCAGACCACAATCAGGAAATTCCCTTCCAGCCAATATGG
TACCATTTTTGATTTGGCGCCCAAAACGTACAACTGGTGGATGAAGACGC
AATGATTCCTTCACAACCATGTCAAGGTAAGGCATTTCTTTGAAATCTTC
GATTTGAAGATCACCAGATTTCTTAAAGCTTATAATCTCCTTGTAAAGCT
TGTCTTGGATTCTCTGGTTTCTTCCCAGACAGTACAAAGTCCAGGCTAAA
GCAGTAGAGGTGGTCTCATAAccagcgaaaacgaaagtattgACTTCATC
CAGGATCCCATCGAGGTCAATGTCACCTTTCTCATATGAATCTAACAAAG
TATCGATGAAAATCCTTCGTTTAGTGTGTTTCATTTCTTCAGCTTTGTCA
AGATTCCTTCGAACTTCGAtccttttttcaagaatttctttAACAAAGCC
GCGCAGCTGGGTAAGTGTTGAGTAGTAACTTTTACCGTTTTTGGTTTGCG
AATAAAGCCAATCGTTTTTATAAAGAGGATTAAGTAACCTTTTGAAAAGG
ATTTGAACTAGACTCTCAAACATAGCTTTAAAGCGTCCTGCATTAGTCTC
GTCAATGGTtaaatcaatccccatcgaagTTTCACAAATAATACTCAACG
AAAACGGTTTAGTGATATCAAAAGCGTTAAAAGATTCATCTTTTTCAtga
aactttttcaacatttcaaTCAATTCTAAAGTCCGATTTTCCATGATGGA
AACAAACtcgttcaaaatttcaaaatgaaaagcaGGGGTAATCATTCGTC
TATGTTTCTTCCAAACATCTCCGGAACTTGTTACAAGGCCATTACCAAGG
AATTTCTTAAAAATCCAATACCCTTGTCCTTTATCTAGATACTTTTGACT
GGACAAAAGAGCTTCCCAAATGGTCACATCAATTGTAATGATTATACGTT
TTGAAAACATTTGCGTAACAAAAGTTCCGTTACCGTTTCGATACCAATTC
GGTTTTTCTTGGTGAAACCACTTGCGGTCATGTAAAGACAGAATATGTCC
AAAGAACGGTTTGCAGCGAGGAACATAGTACAACCAACTTTTATCGGTCC
ATTGAAAATGAAGCCATTGGAATAAAATATACGATAAGATTGCAACGCAT
ATTGTCCCAAATATAGTCAAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052699-exon-scaffold_218-1491911889:338592..342252 | TCONS_00052699-exon-scaffold_218-1491911889:338592..342252 | Clytia hemisphaerica | exon |
| TCONS_00052699-exon-scaffold_218-1510915933:338592..342252 | TCONS_00052699-exon-scaffold_218-1510915933:338592..342252 | Clytia hemisphaerica | exon |
| TCONS_00052699-exon-scaffold_218-1575043694:338592..342252 | TCONS_00052699-exon-scaffold_218-1575043694:338592..342252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:338592..342252 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0020037 | heme binding |
| GO:0004497 | monooxygenase activity |
| GO:0005506 | iron ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0004497 |
monooxygenase activity |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00052699 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 233.802 bits (595), Expect = 1.088e-65 Identity = 156/480 (32.50%), Postives = 245/480 (51.04%), Query Frame = 1
Query: 214 QWTDKSWLYYVPRCKPFFGHILSLH-DRKWFHQEKPNWYRNGNGTFVTQMFSKRI--IITIDVTIWEALLSSQKYLDKGQGYWIFKKFLGNGLVTSSGDVWKKHRRMITPAFHFEILNEFVSIMENRTLELIEMLKKFHEKDESFNAFDITKPFSLSIICETSMGIDLTIDETNAGRFKAMFESLVQILFKRLLNPLYKNDWLYSQTKNGKSYYSTLTQLRGFVKEILEKRI-EVRRNLD-----KAEEMKHTKRRIFIDTLLDSY--EKGDIDLDGILDEVNTFVFAGYETTSTALAWTLYCLGRNQRIQDKLYKEI--ISFKKSGDLQIEDFKEMPYLDMVVKESLRLHPPVVRFGRQIKNGTILAGREFPDCGLVVDIP-GMNRNPEVWENPLTFNPERFEDFELKGKRNPFLFVPFSAGPRNCIGQKFALSELKAAVFHLVKHLELISLQDESELIETMDLTHGCENGPMMKVKPR 1611
+W + V R P GH L + D + F Q+ + + +++ + + + E +L+S K +DK Y + +LG GL+TS+G+ W+ R+M+TP FHF IL +F+ IM + L++ L+K H E+FN F +L IICET+MG ++ + + + +++F+R+ P D Y K G + +L L F ++ +R E+ N D + KRR F+D LL E + + I +EV+TF+F G++TT+ A+ W+LY LG N +Q K+ E+ + K +ED K++ YL+ V+KE+LRL P V F R + +AG V IP ++R+P + NP F PERF +G R+P+ +VPFSAGPRNCIGQKFA+ E K + +++H + S Q EL L NG +K+K R
Sbjct: 43 KWQQMRPIPTVARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEK-HINQEAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQG-RHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRR 520
The following BLAST results are available for this feature:
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