TCONS_00052700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052700
Unique NameTCONS_00052700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052700 ID=TCONS_00052700|Name=TCONS_00052700|organism=Clytia hemisphaerica|type=transcript|length=503bp
caaaaatatttctaaagcaACTTAACTCGTATGATGATATGCTGGAATGA
ataatcaaaaacaaataataatgaaattttaatcGTTTGTAAACCAAAAC
TACATGGTATGTCTCTCAGCTCTCAGTAAGGTTTCATGAAAAATGAagta
atttatttattcaaacaCATGGAGAGTGTGGGAGAAAAATATGAGGATGA
CATGAAGTTGAGACTGgatagtttttcaaaattctttctcaATGAATATG
TCAGGAAAATTTGTCAATAGCTTGATATCTGGTGTATCATAAAGATTTAA
AGAACTTCACAAGAGATAAAGAATTATTCAAGTATCCCTTATCATCTCGA
ACATTTCAAAAGCAAGAGATAAGGCTGGAATTTATTTCCGTAATCCATGC
AAATTTCATACGATGTTGTTGCTCATAAGTAGGtgctaattttaataaaa
agatGGTCTCTTGACAGCAAAACTATTATTATTTAGTCTGATCCGCAAAC
ATA
Run BLAST on NCBI

transcript from alignment at scaffold_218:392243..392745

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052700 ID=TCONS_00052700|Name=TCONS_00052700|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at scaffold_218:392243..392745 (Clytia hemisphaerica)
TATGTTTGCGGATCAGACTAAATAATAATAGTTTTGCTGTCAAGAGACCa
tctttttattaaaattagcaCCTACTTATGAGCAACAACATCGTATGAAA
TTTGCATGGATTACGGAAATAAATTCCAGCCTTATCTCTTGCTTTTGAAA
TGTTCGAGATGATAAGGGATACTTGAATAATTCTTTATCTCTTGTGAAGT
TCTTTAAATCTTTATGATACACCAGATATCAAGCTATTGACAAATTTTCC
TGACATATTCATtgagaaagaattttgaaaaactatcCAGTCTCAACTTC
ATGTCATCCTCATATTTTTCTCCCACACTCTCCATGtgtttgaataaata
aattactTCATTTTTCATGAAACCTTACTGAGAGCTGAGAGACATACCAT
GTAGTTTTGGTTTACAAACgattaaaatttcattattatttgtttttgat
tatTCATTCCAGCATATCATCATACGAGTTAAGTtgctttagaaatattt
ttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033304XLOC_033304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052700-exon-scaffold_218-1491911889:392243..392745TCONS_00052700-exon-scaffold_218-1491911889:392243..392745Clytia hemisphaericaexon
TCONS_00052700-exon-scaffold_218-1510915933:392243..392745TCONS_00052700-exon-scaffold_218-1510915933:392243..392745Clytia hemisphaericaexon
TCONS_00052700-exon-scaffold_218-1575043694:392243..392745TCONS_00052700-exon-scaffold_218-1575043694:392243..392745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:392243..392745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.241345	0	1.63958	1.20306	0	0	0	0.290487	0	0.125958	0.855803	0.160735	0.0802556	0.250039	0.137044	0.0735345	0.0905885	0.278551	0.256555	0.134233	0.116673	0.170727	0.138361	0.12579	0.129561	0.11563	0.496398	0.706359	0	0.136461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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