TCONS_00052701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052701
Unique NameTCONS_00052701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052701 ID=TCONS_00052701|Name=TCONS_00052701|organism=Clytia hemisphaerica|type=transcript|length=672bp
TTCACGATTTGTTTACCCCTTTTTGTTATATAATAAAATTGACTTATTCT
GTTTAGAATTGCGTTGGTTTGATGCATCTTTTTGAAAGTGTTTTATTTTT
CTACAGAAAGTGAATATTGACAAAAACTTATAAACAAGGACACAGCAGGC
TATCTGGATCAaagattattttcattttcatggcATTTCATGTACTTTCT
TTgctactttttatttttctgtttaaCATCAGGTAGATTCACTTGACCCT
CCTGGTCATTCCtttggatgaaaatttgatttgaaccaaccttgaaaact
aattgtaagagcaacttcccaagaaaaagccTTACGGTGGAGAAGACAGC
CATCAAGATCTATGCATCGCAGGATATGCCTGGAAATTTGACTGAACCTC
AAACAATGGCCCATTTActgttgttttgtataagattcccatttctgcaC
TACGATCattgttacttttctggaataCTTCCGCtatttttcctgggATA
ACCCGCATGAAATTGGAAAGGTTTTGTTTCTAAAGATATGGAAAAACTTG
TGCTTACTTACAACATGTCCACTTTTTCGAATTATTGCAGCATTGGGAAT
CTTCTACAAACAACAGTACtagggtagggcgtcaacagtcatttttaggg
caaagtcaaaaaattcaagatg
Run BLAST on NCBI

transcript from alignment at scaffold_218:441702..442373

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052701 ID=TCONS_00052701|Name=TCONS_00052701|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at scaffold_218:441702..442373 (Clytia hemisphaerica)
catcttgaattttttgactttgccctaaaaatgactgttgacgccctacc
ctaGTACTGTTGTTTGTAGAAGATTCCCAATGCTGCAATAATTCGAAAAA
GTGGACATGTTGTAAGTAAGCACAAGTTTTTCCATATCTTTAGAAACAAA
ACCTTTCCAATTTCATGCGGGTTATcccaggaaaaataGCGGAAGtattc
cagaaaagtaacaatGATCGTAGtgcagaaatgggaatcttatacaaaac
aacagTAAATGGGCCATTGTTTGAGGTTCAGTCAAATTTCCAGGCATATC
CTGCGATGCATAGATCTTGATGGCTGTCTTCTCCACCGTAAggctttttc
ttgggaagttgctcttacaattagttttcaaggttggttcaaatcaaatt
ttcatccaaaGGAATGACCAGGAGGGTCAAGTGAATCTACCTGATGttaa
acagaaaaataaaaagtagcAAAGAAAGTACATGAAATgccatgaaaatg
aaaataatcttTGATCCAGATAGCCTGCTGTGTCCTTGTTTATAAGTTTT
TGTCAATATTCACTTTCTGTAGAAAAATAAAACACTTTCAAAAAGATGCA
TCAAACCAACGCAATTCTAAACAGAATAAGTCAATTTTATTATATAACAA
AAAGGGGTAAACAAATCGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033305XLOC_033305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052701-exon-scaffold_218-1491911889:441702..442373TCONS_00052701-exon-scaffold_218-1491911889:441702..442373Clytia hemisphaericaexon
TCONS_00052701-exon-scaffold_218-1510915933:441702..442373TCONS_00052701-exon-scaffold_218-1510915933:441702..442373Clytia hemisphaericaexon
TCONS_00052701-exon-scaffold_218-1575043694:441702..442373TCONS_00052701-exon-scaffold_218-1575043694:441702..442373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:441702..442373 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0747222	0.173519	0.169762	0	0.081656	0.394058	0.184456	0.258284	0	0.0776322	0.561356	0.71346	1.27017	1.04426	1.40081	0.805318	1.53293	0.32582	0.51142	0.592689	0.975689	0.175715	0.159751	0.329079	0.440543	0.315208	0.224265	0.0850487	0.0866511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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