TCONS_00052705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052705
Unique NameTCONS_00052705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052705 ID=TCONS_00052705|Name=TCONS_00052705|organism=Clytia hemisphaerica|type=transcript|length=687bp
CTTGGGACGACACATTGCCTGAGAATCTTCGTCAACTCTGGATATCGAAC
TTCCAACTCATCTCAGAAATTAAAGACATCACCTACAGAAGAGCTATCGT
ACCTGAAGATGCTGAGAGTCTACAAATCAACACGTTGGATTTTGGTGATG
CAAGTCAATCCATTGCATGTTCAGCAATATATATTCGTTTCAAGAGAACC
TGTGGCAACTACTCGTGTCAACTGATTTTTGCTCGTTCACGTATCCTACC
AGAAGACATGACTCAACCAAGAAGAGAACTAGTAGCAGCACTTCTAAATG
CTCACACTAGTGAAGTAGTTTGTCAGGCTTTCTCAACTCAACACAACGCA
TCCCACAAGTTCACTGACAGTCAAATCGTTCTTCACTGGTTATGTAATGA
AGACAGACCACTCAAGAAATGGCTCAGGAGTCGTGTGGTTGAAATCAAAC
GTTTTTCTTCATCATCAAATTGGAGTTACATCAAGAGCACTGACATGATC
GCAGACATAGCAACAAGGAGATGTGACTCAAATGAAGTCATTGCACCCAA
CTCTACATGGATCAATGGATTCCCATGGATGACTGGTGACGACTTCCCAA
ATCTCACAGCAAAGGAAATATCACTCAGCCAGAAAGAACAACAGGAAGTT
TCCAAGGAAGTCAACACAACAGAACAAAAATCACACT
Run BLAST on NCBI

protein sequence of TCONS_00052705-protein

>TCONS_00052705-protein ID=TCONS_00052705-protein|Name=TCONS_00052705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
WDDTLPENLRQLWISNFQLISEIKDITYRRAIVPEDAESLQINTLDFGDA
SQSIACSAIYIRFKRTCGNYSCQLIFARSRILPEDMTQPRRELVAALLNA
HTSEVVCQAFSTQHNASHKFTDSQIVLHWLCNEDRPLKKWLRSRVVEIKR
FSSSSNWSYIKSTDMIADIATRRCDSNEVIAPNSTWINGFPWMTGDDFPN
LTAKEISLSQKEQQEVSKEVNTTEQKSH
Run BLAST on NCBI

transcript from alignment at scaffold_218:480838..481524

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052705 ID=TCONS_00052705|Name=TCONS_00052705|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at scaffold_218:480838..481524 (Clytia hemisphaerica)
AGTGTGATTTTTGTTCTGTTGTGTTGACTTCCTTGGAAACTTCCTGTTGT
TCTTTCTGGCTGAGTGATATTTCCTTTGCTGTGAGATTTGGGAAGTCGTC
ACCAGTCATCCATGGGAATCCATTGATCCATGTAGAGTTGGGTGCAATGA
CTTCATTTGAGTCACATCTCCTTGTTGCTATGTCTGCGATCATGTCAGTG
CTCTTGATGTAACTCCAATTTGATGATGAAGAAAAACGTTTGATTTCAAC
CACACGACTCCTGAGCCATTTCTTGAGTGGTCTGTCTTCATTACATAACC
AGTGAAGAACGATTTGACTGTCAGTGAACTTGTGGGATGCGTTGTGTTGA
GTTGAGAAAGCCTGACAAACTACTTCACTAGTGTGAGCATTTAGAAGTGC
TGCTACTAGTTCTCTTCTTGGTTGAGTCATGTCTTCTGGTAGGATACGTG
AACGAGCAAAAATCAGTTGACACGAGTAGTTGCCACAGGTTCTCTTGAAA
CGAATATATATTGCTGAACATGCAATGGATTGACTTGCATCACCAAAATC
CAACGTGTTGATTTGTAGACTCTCAGCATCTTCAGGTACGATAGCTCTTC
TGTAGGTGATGTCTTTAATTTCTGAGATGAGTTGGAAGTTCGATATCCAG
AGTTGACGAAGATTCTCAGGCAATGTGTCGTCCCAAG

Coding sequence (CDS) from alignment at scaffold_218:480838..481524

>TCONS_00052705 ID=TCONS_00052705|Name=TCONS_00052705|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_218:480838..481524 (Clytia hemisphaerica)
GTGTGATTTTTGTTCTGTTGTGTTGACTTCCTTGGAAACTTCCTGTTGTT
CTTTCTGGCTGAGTGATATTTCCTTTGCTGTGAGATTTGGGAAGTCGTCA
CCAGTCATCCATGGGAATCCATTGATCCATGTAGAGTTGGGTGCAATGAC
TTCATTTGAGTCACATCTCCTTGTTGCTATGTCTGCGATCATGTCAGTGC
TCTTGATGTAACTCCAATTTGATGATGAAGAAAAACGTTTGATTTCAACC
ACACGACTCCTGAGCCATTTCTTGAGTGGTCTGTCTTCATTACATAACCA
GTGAAGAACGATTTGACTGTCAGTGAACTTGTGGGATGCGTTGTGTTGAG
TTGAGAAAGCCTGACAAACTACTTCACTAGTGTGAGCATTTAGAAGTGCT
GCTACTAGTTCTCTTCTTGGTTGAGTCATGTCTTCTGGTAGGATACGTGA
ACGAGCAAAAATCAGTTGACACGAGTAGTTGCCACAGGTTCTCTTGAAAC
GAATATATATTGCTGAACATGCAATGGATTGACTTGCATCACCAAAATCC
AACGTGTTGATTTGTAGACTCTCAGCATCTTCAGGTACGATAGCTCTTCT
GTAGGTGATGTCTTTAATTTCTGAGATGAGTTGGAAGTTCGATATCCAGA
GTTGACGAAGATTCTCAGGCAATGTGTCGTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033309XLOC_033309Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052705-proteinTCONS_00052705-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052705-exon-scaffold_218-1491911889:480838..481524TCONS_00052705-exon-scaffold_218-1491911889:480838..481524Clytia hemisphaericaexon
TCONS_00052705-exon-scaffold_218-1510915933:480838..481524TCONS_00052705-exon-scaffold_218-1510915933:480838..481524Clytia hemisphaericaexon
TCONS_00052705-exon-scaffold_218-1575043694:480838..481524TCONS_00052705-exon-scaffold_218-1575043694:480838..481524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:480838..481524 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296885	0.360425	0.168074	0	0	0	0	0.0893339	0	0.232415	0	0.27524	0	0	0	0	0.0557176	0	0	0	0.215284	0.105008	0	0.0773688	0	0.142239	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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