TCONS_00052714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052714
Unique NameTCONS_00052714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052714 ID=TCONS_00052714|Name=TCONS_00052714|organism=Clytia hemisphaerica|type=transcript|length=299bp
ATAGCCTGTAAAAATCTATGAGAGTGGAATCAGGTCTTAATTTTCTCCAT
GAAACATCAACCATATAGTGTTAATCAGAAACCTAAAATAGAAATTCAAA
AATCAACCCACAAGATTTTCTGTAGCCCTTTTTAGTTTTTGTCACGCCGT
GACGGAAAATTCGGGCCTATGTCAAAATTCCCCTATCTTTTCTTCAATTG
TACTTGAATTGAgatttctttgcttgaaaattcttcaaataggtAGAGTA
TATCAGAATATGCAAAAAATGGAGTCAAAAATGCAGAATTACAATGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_218:641130..641428

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052714 ID=TCONS_00052714|Name=TCONS_00052714|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at scaffold_218:641130..641428 (Clytia hemisphaerica)
ATTCATTGTAATTCTGCATTTTTGACTCCATTTTTTGCATATTCTGATAT
ACTCTacctatttgaagaattttcaagcaaagaaatcTCAATTCAAGTAC
AATTGAAGAAAAGATAGGGGAATTTTGACATAGGCCCGAATTTTCCGTCA
CGGCGTGACAAAAACTAAAAAGGGCTACAGAAAATCTTGTGGGTTGATTT
TTGAATTTCTATTTTAGGTTTCTGATTAACACTATATGGTTGATGTTTCA
TGGAGAAAATTAAGACCTGATTCCACTCTCATAGATTTTTACAGGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033318XLOC_033318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052714-exon-scaffold_218-1491911889:641130..641428TCONS_00052714-exon-scaffold_218-1491911889:641130..641428Clytia hemisphaericaexon
TCONS_00052714-exon-scaffold_218-1510915933:641130..641428TCONS_00052714-exon-scaffold_218-1510915933:641130..641428Clytia hemisphaericaexon
TCONS_00052714-exon-scaffold_218-1575043694:641130..641428TCONS_00052714-exon-scaffold_218-1575043694:641130..641428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:641130..641428 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.65888	8.82758	15.1517	19.1834	18.0462	7.54961	13.1564	17.0541	9.95	6.16234	9.17136	12.8442	11.5175	7.88341	7.37519	8.87407	8.86389	6.66248	2.92873	14.4479	13.6995	18.3758	5.41533	7.79525	11.4095	11.3141	12.4127	12.0953	14.8529	6.6762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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