TCONS_00052720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052720
Unique NameTCONS_00052720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052720 ID=TCONS_00052720|Name=TCONS_00052720|organism=Clytia hemisphaerica|type=transcript|length=258bp
ATCTTATAtgcttcagaaaaaccaaaaacattgcccTAAAAGCTTAGCCT
CACAAAGCCCCAGCTAATAATATAACCCCTGGTTATATCTTTGTATTCTT
ATCCTATAAATATAACGGAACGGCCATTCTACGGAAATTGCTGTCATGTG
ACTTTTTTCTACCACGTGATCCAAATCGCGCATTTTCATTggatgttgaa
aatttatttgtcaCGTGACAAGAACTTCCATCttcacatttttaaaaaac
aaaatggg
Run BLAST on NCBI

transcript from alignment at scaffold_218:792927..793184

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052720 ID=TCONS_00052720|Name=TCONS_00052720|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at scaffold_218:792927..793184 (Clytia hemisphaerica)
cccattttgttttttaaaaatgtgaaGATGGAAGTTCTTGTCACGtgaca
aataaattttcaacatccAATGAAAATGCGCGATTTGGATCACGTGGTAG
AAAAAAGTCACATGACAGCAATTTCCGTAGAATGGCCGTTCCGTTATATT
TATAGGATAAGAATACAAAGATATAACCAGGGGTTATATTATTAGCTGGG
GCTTTGTGAGGCTAAGCTTTTAgggcaatgtttttggtttttctgaagca
TATAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033324XLOC_033324Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052720-exon-scaffold_218-1491911889:792927..793184TCONS_00052720-exon-scaffold_218-1491911889:792927..793184Clytia hemisphaericaexon
TCONS_00052720-exon-scaffold_218-1510915933:792927..793184TCONS_00052720-exon-scaffold_218-1510915933:792927..793184Clytia hemisphaericaexon
TCONS_00052720-exon-scaffold_218-1575043694:792927..793184TCONS_00052720-exon-scaffold_218-1575043694:792927..793184Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:792927..793184 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.70716	2.63991	4.59778	3.74851	0.91269	1.44244	0.870121	1.62919	1.71096	0	2.05704	1.80296	1.80045	0.467446	0.768608	2.06209	1.01613	0.52075	0	0.752846	0.65436	0.957521	0	0	1.45328	3.24255	0	0.990402	0	0.765339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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