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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052723 ID=TCONS_00052723|Name=TCONS_00052723|organism=Clytia hemisphaerica|type=transcript|length=1204bp
gcataatatttctacagaacagatatacattttccaggagtcccattttt
tccaagaacagatgatataatccaggagagcccaggatacaaaacagata
gttttttccaggagaaagggacctcaagaacagatatttcatacttccta
gccggtggctgctcttgaatCTAACAAGCTACTTTGGTAAAAATATGctt
atacagtgtgtcccgaaaaaagcgctTTTTAAATAGTTCTATCTAAATAC
CGATATATTCAAACCATTATCTGATTATACCAACAAAAATAACATCAAGA
ACCATTATCGTTCATCTTCAGCCTTCACAACAATAGTTGCAAGGTAATCA
GGTGCTACATCCTTTCCTTCACCATTCTGAAAAGCTCGTCTCTTCACAAT
CTCATAAACACCCATCTTTTGTTCTTCGCTCCAatcatcaaacttttttt
gcgCTTGCATTACTTGCCAGATACTCAGTGACGTCATGACAATGTCCTAC
GTCATCATCATAAACGTCATGAGTGTATGGAATCTTCATATCATCCAGCT
CCTTCATAACATCCTGGTCACACATTGCATAATTATGGGTAGCCTCTTTA
AACTCAGGTGGTGACGTCTCGACCATGTATGAGTAGACTTCAGAATTGAT
TTCAAAAGTCTGTATGAATATAATAATAACACCACCAGGCTTCAACAAGG
ATCTTGCTTTCTTGACAGCTAACCCTGGATGATCCACATGGTATAACATA
CTAGACATGATCACAAGATCAAAGATATTTTGACCAGAGTTATCATCAtt
accaaaaaaatcacaaaaaggcTGAATTAAGCCATTCAGTTGATTGACCG
TAATTTCATTCTTAGGCGGCAAATCATAATCTTCTGAAAAAGCTTTCTGT
TCAACTACATAAGGTATATCCCATGATTTGACTTTCTCTACAAAATGTGA
GTAAAATTTACTCAGCACCGGGTCAATAGCATGATACAAGTCGACTTTTA
ATTGATTGCCTTTGATGATACATTGGTCTAAAGTTCCATCACCAGCCCCG
ATCGATAGAATATTCAATCCTTTGTTGCTTTTCAGTAGAGAGCCTGCTTC
TAATGTTTCCTTGACTTTAGTTTGCCTTGTAGAATAAAACAGTTGGCTTT
TTTTCCTCTGAAGGAAAGCGTCTTTAAAAAGGTCTTTATTCATTTTCCAA
AANN Run BLAST on NCBI protein sequence of TCONS_00052723-protein >TCONS_00052723-protein ID=TCONS_00052723-protein|Name=TCONS_00052723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
FWKMNKDLFKDAFLQRKKSQLFYSTRQTKVKETLEAGSLLKSNKGLNILS
IGAGDGTLDQCIIKGNQLKVDLYHAIDPVLSKFYSHFVEKVKSWDIPYVV
EQKAFSEDYDLPPKNEITVNQLNGLIQPFCDFFGNDDNSGQNIFDLVIMS
SMLYHVDHPGLAVKKARSLLKPGGVIIIFIQTFEINSEVYSYMVETSPPE
FKEATHNYAMCDQDVMKELDDMKIPYTHDVYDDDVGHCHDVTEYLASNAS
AKKV Run BLAST on NCBI transcript from alignment at scaffold_218:821484..822687 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052723 ID=TCONS_00052723|Name=TCONS_00052723|organism=Clytia hemisphaerica|type=transcript|length=1204bp|location=Sequence derived from alignment at scaffold_218:821484..822687 (Clytia hemisphaerica)
NNTTTTGGAAAATGAATAAAGACCTTTTTAAAGACGCTTTCCTTCAGAGG
AAAAAAAGCCAACTGTTTTATTCTACAAGGCAAACTAAAGTCAAGGAAAC
ATTAGAAGCAGGCTCTCTACTGAAAAGCAACAAAGGATTGAATATTCTAT
CGATCGGGGCTGGTGATGGAACTTTAGACCAATGTATCATCAAAGGCAAT
CAATTAAAAGTCGACTTGTATCATGCTATTGACCCGGTGCTGAGTAAATT
TTACTCACATTTTGTAGAGAAAGTCAAATCATGGGATATACCTTATGTAG
TTGAACAGAAAGCTTTTTCAGAAGATTATGATTTGCCGCCTAAGAATGAA
ATTACGGTCAATCAACTGAATGGCTTAATTCAgcctttttgtgatttttt
tggtaaTGATGATAACTCTGGTCAAAATATCTTTGATCTTGTGATCATGT
CTAGTATGTTATACCATGTGGATCATCCAGGGTTAGCTGTCAAGAAAGCA
AGATCCTTGTTGAAGCCTGGTGGTGTTATTATTATATTCATACAGACTTT
TGAAATCAATTCTGAAGTCTACTCATACATGGTCGAGACGTCACCACCTG
AGTTTAAAGAGGCTACCCATAATTATGCAATGTGTGACCAGGATGTTATG
AAGGAGCTGGATGATATGAAGATTCCATACACTCATGACGTTTATGATGA
TGACGTAGGACATTGTCATGACGTCACTGAGTATCTGGCAAGTAATGCAA
GcgcaaaaaaagtttgatgatTGGAGCGAAGAACAAAAGATGGGTGTTTA
TGAGATTGTGAAGAGACGAGCTTTTCAGAATGGTGAAGGAAAGGATGTAG
CACCTGATTACCTTGCAACTATTGTTGTGAAGGCTGAAGATGAACGATAA
TGGTTCTTGATGTTATTTTTGTTGGTATAATCAGATAATGGTTTGAATAT
ATCGGTATTTAGATAGAACTATTTAAAAagcgcttttttcgggacacact
gtataagCATATTTTTACCAAAGTAGCTTGTTAGattcaagagcagccac
cggctaggaagtatgaaatatctgttcttgaggtccctttctcctggaaa
aaactatctgttttgtatcctgggctctcctggattatatcatctgttct
tggaaaaaatgggactcctggaaaatgtatatctgttctgtagaaatatt
atgc Coding sequence (CDS) from alignment at scaffold_218:821484..822687 >TCONS_00052723 ID=TCONS_00052723|Name=TCONS_00052723|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_218:821484..822687 (Clytia hemisphaerica)
TTTTGGAAAATGAATAAAGACCTTTTTAAAGACGCTTTCCTTCAGAGGAA
AAAAAGCCAACTGTTTTATTCTACAAGGCAAACTAAAGTCAAGGAAACAT
TAGAAGCAGGCTCTCTACTGAAAAGCAACAAAGGATTGAATATTCTATCG
ATCGGGGCTGGTGATGGAACTTTAGACCAATGTATCATCAAAGGCAATCA
ATTAAAAGTCGACTTGTATCATGCTATTGACCCGGTGCTGAGTAAATTTT
ACTCACATTTTGTAGAGAAAGTCAAATCATGGGATATACCTTATGTAGTT
GAACAGAAAGCTTTTTCAGAAGATTATGATTTGCCGCCTAAGAATGAAAT
TACGGTCAATCAACTGAATGGCTTAATTCAgcctttttgtgatttttttg
gtaaTGATGATAACTCTGGTCAAAATATCTTTGATCTTGTGATCATGTCT
AGTATGTTATACCATGTGGATCATCCAGGGTTAGCTGTCAAGAAAGCAAG
ATCCTTGTTGAAGCCTGGTGGTGTTATTATTATATTCATACAGACTTTTG
AAATCAATTCTGAAGTCTACTCATACATGGTCGAGACGTCACCACCTGAG
TTTAAAGAGGCTACCCATAATTATGCAATGTGTGACCAGGATGTTATGAA
GGAGCTGGATGATATGAAGATTCCATACACTCATGACGTTTATGATGATG
ACGTAGGACATTGTCATGACGTCACTGAGTATCTGGCAAGTAATGCAAGc
gcaaaaaaagtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052723-exon-scaffold_218-1491911889:821484..822687 | TCONS_00052723-exon-scaffold_218-1491911889:821484..822687 | Clytia hemisphaerica | exon |
| TCONS_00052723-exon-scaffold_218-1510915933:821484..822687 | TCONS_00052723-exon-scaffold_218-1510915933:821484..822687 | Clytia hemisphaerica | exon |
| TCONS_00052723-exon-scaffold_218-1575043694:821484..822687 | TCONS_00052723-exon-scaffold_218-1575043694:821484..822687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:821484..822687 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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