TCONS_00052729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052729
Unique NameTCONS_00052729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052729 ID=TCONS_00052729|Name=TCONS_00052729|organism=Clytia hemisphaerica|type=transcript|length=2264bp
GACTGCAGCTTGTAAGAACACATGTCATTAAAACATTGGACATAGCAGCT
TCAATGAATGCATCAGAGATGCAGACAACAGAATTGTTGATATATGTTGG
GGAATTATTGGAACTCTCGGATCCTCAAGTTTCACAGCTTTGGCCGCGTG
GACTCTATGCAGCAAAGTCAATTTTGAAATCTGGGGACCTGTACTCTCCC
CCAGAAGAAAacttaatttgttttgataaggTCGAACATCCGTTATATTG
GTATGAGTTGGAAGTTGGAGAACCATGTCCTGGATGTTTGGTTGTTCCAG
ATTTACACAGATACTATTTACCGTTAAGAGACAAATTTAAAAGATGGTTT
TCTAGTGTTGATATGTGCAACAAGATGTTGGCACACTGGGAAGACAGTGA
AACCTGGCTTCATAAAACAGGACCAACTTTTCCATtaaatgaaatttggc
atggcACCCGCTTCAAAGAAATACAATGGTTTTTCAATCCAGAAGCTTCA
TGGCCTCTCCCTTACAAGTGTGTGTGCAACAACATAATAAACTTACAAAC
TATGGAAATTCAACAACACATGCAGACAGTTTTGGTTGATTGCTCACATT
GTGAACGGCAAGCAAATGTCAAACCTGTATTTGTTCACGGTGACCCAAGG
AACATAGCTTTAATTGGACATTGGGATGGCTGGCAAGCAGGATTTGGAAG
AGGATTTTCAACTGGCTCAGGCTCAATTGAAGTTACGATTGCCAACATGA
AAAAGAGAGACCGCTGTAaagatgaaaatgtttttgtatCCTCGTTTGTC
CCAGAGAAGCACTTACCTAATAAGCAGCCATCTGCTCTGGATCCATTTTT
AGAACCTCTCATACAGGAACTAGAAGAACTGTTCATAAATGGTTTAGAAA
TTGATTACCCACCTGGTGTTTATACTGAGGATGGAGGAAAGTTCACAGTG
AGGTGTATGTTATTATGTTGGACCGGTGATTATCCAGGACAGTGCCAAGT
CGGTAAATTCTCGTGCAAGGGAACTTTTGGTTGTCGTGTTGATAAATGCA
AAGgagAGTCGGTCGAAAATAGCCATACAAAATATTACATTGGGAACCGC
GATAAGTATACGAACCGCtggcaacaaagaaaaattgaggATGAATATGA
CACAATGTATGACATTGAAATGAAGGCCTCAATTCACGCCAAGCTTGCTG
CTGCTACTAAGACCGGATACACTGGCCTTTCCCTTCTTCACAGGCCATAT
AAATTGTACGGCTTCAACCTCTTTCGAGACATGACTCGTGATGTCATGCA
TTTGGTTGCGTTAAACCTGagcaaaaaattattcaaacgCATTTTTGCCG
AATACATTCTCCAAGCTGAGGAATTCAACGAAGAAATGCAAAGTTTCCCA
TTGACACCTGagCTCCGAGATGGTCACTGCCCAAGACACGTAGATAAGTG
TAGTTCATGGACAGCAGAGGAATGGAAAAAATTTGCATTTCCTATGGCAG
AAGTACTGTTGAAGGATAAGCTACCAGATAATGAATTTCATTTAGTCTGG
CTTACTGCTCGTATTGTTGAGCTTTTGTTCCACAGAAGAAATGGTTTGGA
TTGTCTTCAACTCGAAAAACTTGAGAAGATTTGTTGGAGACGTTTGATTC
GTTTGGAGGAGGAGATTGGTGGGAAACAGTGTGTTATTACCTGTCACAAT
AGCATACACATCGGTGAAGATTTGCTGAGATTTGCACATTGTGATAACCT
ATGGTGCTTTGNAAATGATCAGATTTAGTTTAGCGTTTGAAATTCCAATT
CGCACTTGTAATGCTGCccagaagaataaaaaaagccACGCGTGTGAAAC
TTGTTTTCAACTTTTAGTTTAACGTGTGAAATTACTATTCACACCTCTAA
AACTGCCCAGACgaattaaaaagtcaaatttttgttaGCTATGGGAATTG
CAGTTTCAACATGAAAATTAAGTTCAACCAAACTTAGAGATTTTCAATGT
CACACGTGTAGGaatgtaaaatacaaaagacTGAAAAAATGGCAAGGTTT
GGAGTGGTCTTTGCTCCGAATATGGAATTTTTAGACTATCAAGAATCACN
GGATTGTCTTCAACTCGAAAAACTTGAGAAGATTTGTTGGAGACGTTTGA
TTCGTTTGGAGGAGGAGATTGGTGGGAAACAGTGTGTTATTACCTGTCAC
AATAGCATACACATCGGTGAAGATTTGCTGAGATTTGCACATTGTGATAA
CCTATGGTGCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00052729-protein

>TCONS_00052729-protein ID=TCONS_00052729-protein|Name=TCONS_00052729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
LQLVRTHVIKTLDIAASMNASEMQTTELLIYVGELLELSDPQVSQLWPRG
LYAAKSILKSGDLYSPPEENLICFDKVEHPLYWYELEVGEPCPGCLVVPD
LHRYYLPLRDKFKRWFSSVDMCNKMLAHWEDSETWLHKTGPTFPLNEIWH
GTRFKEIQWFFNPEASWPLPYKCVCNNIINLQTMEIQQHMQTVLVDCSHC
ERQANVKPVFVHGDPRNIALIGHWDGWQAGFGRGFSTGSGSIEVTIANMK
KRDRCKDENVFVSSFVPEKHLPNKQPSALDPFLEPLIQELEELFINGLEI
DYPPGVYTEDGGKFTVRCMLLCWTGDYPGQCQVGKFSCKGTFGCRVDKCK
GESVENSHTKYYIGNRDKYTNRWQQRKIEDEYDTMYDIEMKASIHAKLAA
ATKTGYTGLSLLHRPYKLYGFNLFRDMTRDVMHLVALNLSKKLFKRIFAE
YILQAEEFNEEMQSFPLTPELRDGHCPRHVDKCSSWTAEEWKKFAFPMAE
VLLKDKLPDNEFHLVWLTARIVELLFHRRNGLDCLQLEKLEKICWRRLIR
LEEEIGGKQCVITCHNSIHIGEDLLRFAHCDNLWCFXNDQI
Run BLAST on NCBI

transcript from alignment at scaffold_219:62122..67070+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052729 ID=TCONS_00052729|Name=TCONS_00052729|organism=Clytia hemisphaerica|type=transcript|length=4949bp|location=Sequence derived from alignment at scaffold_219:62122..67070+ (Clytia hemisphaerica)
GACTGCAGCTTGTAAGAACACATGTCATTAAAACATTGGACATAGCAGCT
TCAATGAATGCATCAGAGATGCAGACAACAGAATTGTTGATATATGTTGG
GGAATTATTGGAACTCTCGGATCCTCAAGTTTCACAGCTTTGGCCGCGTG
GACTCTATGCAGCAAAGTCAATTTTGAAATCTGGGGACCTGTACTCTCCC
CCAGAAGAAAacttaatttgttttgataaggTCGAACATCCGTTATATTG
GTATGAGTTGGAAGTTGGAGAACCATGTCCTGGATGTTTGGTTGTTCCAG
ATTTACACAGATACTATTTACCGTTAAGAGACAAATTTAAAAGATGGTTT
TCTAGTGTTGATATGTGCAACAAGATGTTGGCACACTGGGAAGACAGTGA
AACCTGGCTTCATAAAACAGGACCAACTTTTCCATtaaatgaaatttggc
atggcACCCGCTTCAAAGAAATACAATGGTTTTTCAATCCAGAAGCTTCA
TGGCCTCTCCCTTACAAGTGTGTGTGCAACAACATAATAAACTTACAAAC
TATGGAAATTCAACAACACATGCAGACAGTTTTGGTTGATTGCTCACATT
GTGAACGGCAAGCAAATGTCAAACCTGTATTTGTTCACGGTGACCCAAGG
AACATAGCTTTAATTGGACATTGGGATGGCTGGCAAGCAGGATTTGGAAG
AGGATTTTCAACTGGCTCAGGTAGGAAGCTTTGATTACCTGCACCAGAGA
AGGGAGTGAATGATGTAAAAAGTGCAATCAATACTTTTTTTGAATCCATA
ATTTTTCCACCCCTAAGTGGATTTCTTGTACTCTTCAAGGTGTTAAATGT
ACGTTTCATGCATGGGTGATTTGCTAACTTTTTCCTGTGTTTTGAAAGGA
AGCGTTATTCGCAAATACAATGCTTTTAAATCGTTGAAAATAAACCCTTC
ATAAGTGGCCTACAGTTGCAAGgggttttataaaaatattttggcgACTG
CAGCGTGTATCAACCACCTATAATGGTTACTCCAAGgccaaaactcaatt
tctaagtCAAAAATCGGCCAATGaccaaagtgcttggaattttgcctGAC
AGGTATCTGTTATTAATCCTAATCCTATACTTTATACCTAAATATTGTAT
CTCAACTCTTACAGGCTCAATTGAAGTTACGATTGCCAACATGAAAAAGA
GAGACCGCTGTAaagatgaaaatgtttttgtatCCTCGTTTGTCCCAGAG
AAGCACTTACCTAATAAGCAGCCATCTGCTCTGGATCCATTTTTAGAACC
TCTCATACAGGAACTAGAAGAACTGTTCATAAATGGTATGAAATTGTCTC
CTGTCTTTGAAGGGAGAAATTTtggatgaaaaatttttttttggatataT
CCATAGCCAGGCAAattttataaaggggggggggattctgattttggccc
tttttttaaagtatgggggaaaatgaaaaatttgaaatttgctgggggaa
AATAAAGAGGGGGAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGGGGGGAACCAACaca
ggaggacactatggtaTTTGACCAGGTATTTCTTCTTCTGAAACTATACA
AACTACCACCTTGAGTCAAATAGGTTCCATAATTCTACCTCATTAGACCT
TGTCAAcatattcaaaaaatataactaaTTTTATCTCCAACACTCATTTA
GcatttaaaaaactataaattttattacatttcAGGTTTAGAAATTGATT
ACCCACCTGGTGTTTATACTGAGGATGGAGGAAAGTTCACAGTGAGGTGT
ATGTTATTATGTTGGACCGGTGATTATCCAGGACAGTGCCAAGTCGGTAA
ATTCTCGTGCAAGGGAACTTTTGGTTGTCGTGTTGATAAATGCAAAGGTA
TGTATACAATCTGTGTTCTCAAAAGTAATCAGCTAATCAATTATCTTATG
CAAATTGGAACCAGAAAAAAGTTGAAGAAGGAATGAAGATTGAGGATCCA
CAAAGAGTTCTAAAAGTCTCAACCAACgtttattgaataaaaatgacagt
atatattttctaaaaaatcgagCTTATTCATACTTCTACATTTTAAGATT
TCTttaaatttgtgaaaaatgCAATTCACTAGTAACTTTTTATCTAACTT
TATATGGCCACACCACTACATATGTCACTAGACTAGGCCATATTACCTAC
CAatcgtttttgtttttattttttaggagAGTCGGTCGAAAATAGCCATA
CAAAATATTACATTGGGAACCGCGATAAGTATACGAACCGCtggcaacaa
agaaaaattgaggATGAATATGACACAATGTATGACATTGAAATGAAGGC
CTCAATTCACGCCAAGCTTGCTGCTGCTACTAAGACCGGATACACTGGCC
TTTCCCTTCTTCACAGGCCATATAAATTGTACGGCTTCAACCTCTTTCGA
GACATGACTCGTGATGTCATGCATTTGGTTGCGTTAAACCTGagcaaaaa
attattcaaacgCATTTTTGCCGAATACATTCTCCAAGCTGAGGAATTCA
ACGAAGAAATGCAAAGTTTCCCATTGACACCTGGTAATTTTCCATATGAC
TTGTCACGATTTTTACCACAGGAAAAAGTATGGAAATCACATGCTTGGTA
AAACTGATTTCCGAGCatgtgatcctgcaaaaaatcacatgcgtgtgaaa
atgcAATTCACAAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCTC
GGAAAttggttttcacacgcatgtgattcacggattttttcctgtgtaca
TGGCTTCATCTGTTAGATTCTCGTTTTCTCTCATTATTAATTGCCGATTT
TCATACATATATAGCTACTTCTTTTACTATCAGACACTCTAACAGAACTT
CACACGGAGTTAAACATAAATTCAAtgcatatatttttatttcagagCTC
CGAGATGGTCACTGCCCAAGACACGTAGATAAGTGTAGTTCATGGACAGC
AGAGGAATGGAAAAAATTTGCATTTCCTATGGCAGAAGTACTGTTGAAGG
ATAAGCTACCAGATAATGAATTTCATTTAGTCTGGCTTACTGCTCGTATT
GTTGAGCTTTTGTTCCACAGAAGAAATGGTTTGGATTGTCTTCAACTCGA
AAAACTTGAGAAGATTTGTTGGAGACGTTTGATTCGTTTGGAGGAGGAGA
TTGGTGGGAAACAGTGTGTTATTACCTGTCACAATAGCATACACATCGGT
GAAGATTTGCTGAGATTTGCACATTGTGATAACCTATGGTGCTTTGNAAA
TGATCAGATTTAGTTTAGCGTTTGAAATTCCAATTCGCACTTGTAATGCT
GCccagaagaataaaaaaagccACGCGTGTGAAACTTGTTTTCAACTTTT
AGTTTAACGTGTGAAATTACTATTCACACCTCTAAAACTGCCCAGACgaa
ttaaaaagtcaaatttttgttaGCTATGGGAATTGCAGTTTCAACATGAA
AATTAAGTTCAACCAAACTTAGAGATTTTCAATGTCACACGTGTAGGaat
gtaaaatacaaaagacTGAAAAAATGGCAAGGTTTGGAGTGGTCTTTGCT
CCGAATATGGAATTTTTAGACTATCAAGAATCACNGGATTGTCTTCAACT
CGAAAAACTTGAGAAGATTTGTTGGAGACGTTTGATTCGTTTGGAGGAGG
AGATTGGTGGGAAACAGTGTGTTATTACCTGTCACAATAGCATACACATC
GGTGAAGATTTGCTGAGATTTGCACATTGTGATAACCTATGGTGCTTTG

Coding sequence (CDS) from alignment at scaffold_219:62122..67070+

>TCONS_00052729 ID=TCONS_00052729|Name=TCONS_00052729|organism=Clytia hemisphaerica|type=CDS|length=8880bp|location=Sequence derived from alignment at scaffold_219:62122..67070+ (Clytia hemisphaerica)
CTGCAGCTTGTAAGAACACATGTCATTAAAACATTGGACATAGCAGCTTC
AATGAATGCATCAGAGATGCAGACAACAGAATTGTTGATATATGTTGGGG
AATTATTGGAACTCTCGGATCCTCAAGTTTCACAGCTTTGGCCGCGTGGA
CTCTATGCAGCAAAGTCAATTTTGAAATCTGGGGACCTGTACTCTCCCCC
AGAAGAAAacttaatttgttttgataaggTCGAACATCCGTTATATTGGT
ATGAGTTGGAAGTTGGAGAACCATGTCCTGGATGTTTGGTTGTTCCAGAT
TTACACAGATACTATTTACCGTTAAGAGACAAATTTAAAAGATGGTTTTC
TAGTGTTGATATGTGCAACAAGATGTTGGCACACTGGGAAGACAGTGAAA
CCTGGCTTCATAAAACAGGACCAACTTTTCCATtaaatgaaatttggcat
ggcACCCGCTTCAAAGAAATACAATGGTTTTTCAATCCAGAAGCTTCATG
GCCTCTCCCTTACAAGTGTGTGTGCAACAACATAATAAACTTACAAACTA
TGGAAATTCAACAACACATGCAGACAGTTTTGGTTGATTGCTCACATTGT
GAACGGCAAGCAAATGTCAAACCTGTATTTGTTCACGGTGACCCAAGGAA
CATAGCTTTAATTGGACATTGGGATGGCTGGCAAGCAGGATTTGGAAGAG
GATTTTCAACTGGCTCAGGCTCAATTGAAGTTACGATTGCCAACATGAAA
AAGAGAGACCGCTGTAaagatgaaaatgtttttgtatCCTCGTTTGTCCC
AGAGAAGCACTTACCTAATAAGCAGCCATCTGCTCTGGATCCATTTTTAG
AACCTCTCATACAGGAACTAGAAGAACTGTTCATAAATGGTTTAGAAATT
GATTACCCACCTGGTGTTTATACTGAGGATGGAGGAAAGTTCACAGTGAG
GTGTATGTTATTATGTTGGACCGGTGATTATCCAGGACAGTGCCAAGTCG
GTAAATTCTCGTGCAAGGGAACTTTTGGTTGTCGTGTTGATAAATGCAAA
GgagAGTCGGTCGAAAATAGCCATACAAAATATTACATTGGGAACCGCGA
TAAGTATACGAACCGCtggcaacaaagaaaaattgaggATGAATATGACA
CAATGTATGACATTGAAATGAAGGCCTCAATTCACGCCAAGCTTGCTGCT
GCTACTAAGACCGGATACACTGGCCTTTCCCTTCTTCACAGGCCATATAA
ATTGTACGGCTTCAACCTCTTTCGAGACATGACTCGTGATGTCATGCATT
TGGTTGCGTTAAACCTGagcaaaaaattattcaaacgCATTTTTGCCGAA
TACATTCTCCAAGCTGAGGAATTCAACGAAGAAATGCAAAGTTTCCCATT
GACACCTGagCTCCGAGATGGTCACTGCCCAAGACACGTAGATAAGTGTA
GTTCATGGACAGCAGAGGAATGGAAAAAATTTGCATTTCCTATGGCAGAA
GTACTGTTGAAGGATAAGCTACCAGATAATGAATTTCATTTAGTCTGGCT
TACTGCTCGTATTGTTGAGCTTTTGTTCCACAGAAGAAATGGTTTGGATT
GTCTTCAACTCGAAAAACTTGAGAAGATTTGTTGGAGACGTTTGATTCGT
TTGGAGGAGGAGATTGGTGGGAAACAGTGTGTTATTACCTGTCACAATAG
CATACACATCGGTGAAGATTTGCTGAGATTTGCACATTGTGATAACCTAT
GGTGCTTTGNAAATGATCAGATTTAGCTGCAGCTTGTAAGAACACATGTC
ATTAAAACATTGGACATAGCAGCTTCAATGAATGCATCAGAGATGCAGAC
AACAGAATTGTTGATATATGTTGGGGAATTATTGGAACTCTCGGATCCTC
AAGTTTCACAGCTTTGGCCGCGTGGACTCTATGCAGCAAAGTCAATTTTG
AAATCTGGGGACCTGTACTCTCCCCCAGAAGAAAacttaatttgttttga
taaggTCGAACATCCGTTATATTGGTATGAGTTGGAAGTTGGAGAACCAT
GTCCTGGATGTTTGGTTGTTCCAGATTTACACAGATACTATTTACCGTTA
AGAGACAAATTTAAAAGATGGTTTTCTAGTGTTGATATGTGCAACAAGAT
GTTGGCACACTGGGAAGACAGTGAAACCTGGCTTCATAAAACAGGACCAA
CTTTTCCATtaaatgaaatttggcatggcACCCGCTTCAAAGAAATACAA
TGGTTTTTCAATCCAGAAGCTTCATGGCCTCTCCCTTACAAGTGTGTGTG
CAACAACATAATAAACTTACAAACTATGGAAATTCAACAACACATGCAGA
CAGTTTTGGTTGATTGCTCACATTGTGAACGGCAAGCAAATGTCAAACCT
GTATTTGTTCACGGTGACCCAAGGAACATAGCTTTAATTGGACATTGGGA
TGGCTGGCAAGCAGGATTTGGAAGAGGATTTTCAACTGGCTCAGGCTCAA
TTGAAGTTACGATTGCCAACATGAAAAAGAGAGACCGCTGTAaagatgaa
aatgtttttgtatCCTCGTTTGTCCCAGAGAAGCACTTACCTAATAAGCA
GCCATCTGCTCTGGATCCATTTTTAGAACCTCTCATACAGGAACTAGAAG
AACTGTTCATAAATGGTTTAGAAATTGATTACCCACCTGGTGTTTATACT
GAGGATGGAGGAAAGTTCACAGTGAGGTGTATGTTATTATGTTGGACCGG
TGATTATCCAGGACAGTGCCAAGTCGGTAAATTCTCGTGCAAGGGAACTT
TTGGTTGTCGTGTTGATAAATGCAAAGgagAGTCGGTCGAAAATAGCCAT
ACAAAATATTACATTGGGAACCGCGATAAGTATACGAACCGCtggcaaca
aagaaaaattgaggATGAATATGACACAATGTATGACATTGAAATGAAGG
CCTCAATTCACGCCAAGCTTGCTGCTGCTACTAAGACCGGATACACTGGC
CTTTCCCTTCTTCACAGGCCATATAAATTGTACGGCTTCAACCTCTTTCG
AGACATGACTCGTGATGTCATGCATTTGGTTGCGTTAAACCTGagcaaaa
aattattcaaacgCATTTTTGCCGAATACATTCTCCAAGCTGAGGAATTC
AACGAAGAAATGCAAAGTTTCCCATTGACACCTGagCTCCGAGATGGTCA
CTGCCCAAGACACGTAGATAAGTGTAGTTCATGGACAGCAGAGGAATGGA
AAAAATTTGCATTTCCTATGGCAGAAGTACTGTTGAAGGATAAGCTACCA
GATAATGAATTTCATTTAGTCTGGCTTACTGCTCGTATTGTTGAGCTTTT
GTTCCACAGAAGAAATGGTTTGGATTGTCTTCAACTCGAAAAACTTGAGA
AGATTTGTTGGAGACGTTTGATTCGTTTGGAGGAGGAGATTGGTGGGAAA
CAGTGTGTTATTACCTGTCACAATAGCATACACATCGGTGAAGATTTGCT
GAGATTTGCACATTGTGATAACCTATGGTGCTTTGNAAATGATCAGATTT
AGCTGCAGCTTGTAAGAACACATGTCATTAAAACATTGGACATAGCAGCT
TCAATGAATGCATCAGAGATGCAGACAACAGAATTGTTGATATATGTTGG
GGAATTATTGGAACTCTCGGATCCTCAAGTTTCACAGCTTTGGCCGCGTG
GACTCTATGCAGCAAAGTCAATTTTGAAATCTGGGGACCTGTACTCTCCC
CCAGAAGAAAacttaatttgttttgataaggTCGAACATCCGTTATATTG
GTATGAGTTGGAAGTTGGAGAACCATGTCCTGGATGTTTGGTTGTTCCAG
ATTTACACAGATACTATTTACCGTTAAGAGACAAATTTAAAAGATGGTTT
TCTAGTGTTGATATGTGCAACAAGATGTTGGCACACTGGGAAGACAGTGA
AACCTGGCTTCATAAAACAGGACCAACTTTTCCATtaaatgaaatttggc
atggcACCCGCTTCAAAGAAATACAATGGTTTTTCAATCCAGAAGCTTCA
TGGCCTCTCCCTTACAAGTGTGTGTGCAACAACATAATAAACTTACAAAC
TATGGAAATTCAACAACACATGCAGACAGTTTTGGTTGATTGCTCACATT
GTGAACGGCAAGCAAATGTCAAACCTGTATTTGTTCACGGTGACCCAAGG
AACATAGCTTTAATTGGACATTGGGATGGCTGGCAAGCAGGATTTGGAAG
AGGATTTTCAACTGGCTCAGGCTCAATTGAAGTTACGATTGCCAACATGA
AAAAGAGAGACCGCTGTAaagatgaaaatgtttttgtatCCTCGTTTGTC
CCAGAGAAGCACTTACCTAATAAGCAGCCATCTGCTCTGGATCCATTTTT
AGAACCTCTCATACAGGAACTAGAAGAACTGTTCATAAATGGTTTAGAAA
TTGATTACCCACCTGGTGTTTATACTGAGGATGGAGGAAAGTTCACAGTG
AGGTGTATGTTATTATGTTGGACCGGTGATTATCCAGGACAGTGCCAAGT
CGGTAAATTCTCGTGCAAGGGAACTTTTGGTTGTCGTGTTGATAAATGCA
AAGgagAGTCGGTCGAAAATAGCCATACAAAATATTACATTGGGAACCGC
GATAAGTATACGAACCGCtggcaacaaagaaaaattgaggATGAATATGA
CACAATGTATGACATTGAAATGAAGGCCTCAATTCACGCCAAGCTTGCTG
CTGCTACTAAGACCGGATACACTGGCCTTTCCCTTCTTCACAGGCCATAT
AAATTGTACGGCTTCAACCTCTTTCGAGACATGACTCGTGATGTCATGCA
TTTGGTTGCGTTAAACCTGagcaaaaaattattcaaacgCATTTTTGCCG
AATACATTCTCCAAGCTGAGGAATTCAACGAAGAAATGCAAAGTTTCCCA
TTGACACCTGagCTCCGAGATGGTCACTGCCCAAGACACGTAGATAAGTG
TAGTTCATGGACAGCAGAGGAATGGAAAAAATTTGCATTTCCTATGGCAG
AAGTACTGTTGAAGGATAAGCTACCAGATAATGAATTTCATTTAGTCTGG
CTTACTGCTCGTATTGTTGAGCTTTTGTTCCACAGAAGAAATGGTTTGGA
TTGTCTTCAACTCGAAAAACTTGAGAAGATTTGTTGGAGACGTTTGATTC
GTTTGGAGGAGGAGATTGGTGGGAAACAGTGTGTTATTACCTGTCACAAT
AGCATACACATCGGTGAAGATTTGCTGAGATTTGCACATTGTGATAACCT
ATGGTGCTTTGNAAATGATCAGATTTAGCTGCAGCTTGTAAGAACACATG
TCATTAAAACATTGGACATAGCAGCTTCAATGAATGCATCAGAGATGCAG
ACAACAGAATTGTTGATATATGTTGGGGAATTATTGGAACTCTCGGATCC
TCAAGTTTCACAGCTTTGGCCGCGTGGACTCTATGCAGCAAAGTCAATTT
TGAAATCTGGGGACCTGTACTCTCCCCCAGAAGAAAacttaatttgtttt
gataaggTCGAACATCCGTTATATTGGTATGAGTTGGAAGTTGGAGAACC
ATGTCCTGGATGTTTGGTTGTTCCAGATTTACACAGATACTATTTACCGT
TAAGAGACAAATTTAAAAGATGGTTTTCTAGTGTTGATATGTGCAACAAG
ATGTTGGCACACTGGGAAGACAGTGAAACCTGGCTTCATAAAACAGGACC
AACTTTTCCATtaaatgaaatttggcatggcACCCGCTTCAAAGAAATAC
AATGGTTTTTCAATCCAGAAGCTTCATGGCCTCTCCCTTACAAGTGTGTG
TGCAACAACATAATAAACTTACAAACTATGGAAATTCAACAACACATGCA
GACAGTTTTGGTTGATTGCTCACATTGTGAACGGCAAGCAAATGTCAAAC
CTGTATTTGTTCACGGTGACCCAAGGAACATAGCTTTAATTGGACATTGG
GATGGCTGGCAAGCAGGATTTGGAAGAGGATTTTCAACTGGCTCAGGCTC
AATTGAAGTTACGATTGCCAACATGAAAAAGAGAGACCGCTGTAaagatg
aaaatgtttttgtatCCTCGTTTGTCCCAGAGAAGCACTTACCTAATAAG
CAGCCATCTGCTCTGGATCCATTTTTAGAACCTCTCATACAGGAACTAGA
AGAACTGTTCATAAATGGTTTAGAAATTGATTACCCACCTGGTGTTTATA
CTGAGGATGGAGGAAAGTTCACAGTGAGGTGTATGTTATTATGTTGGACC
GGTGATTATCCAGGACAGTGCCAAGTCGGTAAATTCTCGTGCAAGGGAAC
TTTTGGTTGTCGTGTTGATAAATGCAAAGgagAGTCGGTCGAAAATAGCC
ATACAAAATATTACATTGGGAACCGCGATAAGTATACGAACCGCtggcaa
caaagaaaaattgaggATGAATATGACACAATGTATGACATTGAAATGAA
GGCCTCAATTCACGCCAAGCTTGCTGCTGCTACTAAGACCGGATACACTG
GCCTTTCCCTTCTTCACAGGCCATATAAATTGTACGGCTTCAACCTCTTT
CGAGACATGACTCGTGATGTCATGCATTTGGTTGCGTTAAACCTGagcaa
aaaattattcaaacgCATTTTTGCCGAATACATTCTCCAAGCTGAGGAAT
TCAACGAAGAAATGCAAAGTTTCCCATTGACACCTGagCTCCGAGATGGT
CACTGCCCAAGACACGTAGATAAGTGTAGTTCATGGACAGCAGAGGAATG
GAAAAAATTTGCATTTCCTATGGCAGAAGTACTGTTGAAGGATAAGCTAC
CAGATAATGAATTTCATTTAGTCTGGCTTACTGCTCGTATTGTTGAGCTT
TTGTTCCACAGAAGAAATGGTTTGGATTGTCTTCAACTCGAAAAACTTGA
GAAGATTTGTTGGAGACGTTTGATTCGTTTGGAGGAGGAGATTGGTGGGA
AACAGTGTGTTATTACCTGTCACAATAGCATACACATCGGTGAAGATTTG
CTGAGATTTGCACATTGTGATAACCTATGGTGCTTTGNAAATGATCAGAT
TTAGCTGCAGCTTGTAAGAACACATGTCATTAAAACATTGGACATAGCAG
CTTCAATGAATGCATCAGAGATGCAGACAACAGAATTGTTGATATATGTT
GGGGAATTATTGGAACTCTCGGATCCTCAAGTTTCACAGCTTTGGCCGCG
TGGACTCTATGCAGCAAAGTCAATTTTGAAATCTGGGGACCTGTACTCTC
CCCCAGAAGAAAacttaatttgttttgataaggTCGAACATCCGTTATAT
TGGTATGAGTTGGAAGTTGGAGAACCATGTCCTGGATGTTTGGTTGTTCC
AGATTTACACAGATACTATTTACCGTTAAGAGACAAATTTAAAAGATGGT
TTTCTAGTGTTGATATGTGCAACAAGATGTTGGCACACTGGGAAGACAGT
GAAACCTGGCTTCATAAAACAGGACCAACTTTTCCATtaaatgaaatttg
gcatggcACCCGCTTCAAAGAAATACAATGGTTTTTCAATCCAGAAGCTT
CATGGCCTCTCCCTTACAAGTGTGTGTGCAACAACATAATAAACTTACAA
ACTATGGAAATTCAACAACACATGCAGACAGTTTTGGTTGATTGCTCACA
TTGTGAACGGCAAGCAAATGTCAAACCTGTATTTGTTCACGGTGACCCAA
GGAACATAGCTTTAATTGGACATTGGGATGGCTGGCAAGCAGGATTTGGA
AGAGGATTTTCAACTGGCTCAGGCTCAATTGAAGTTACGATTGCCAACAT
GAAAAAGAGAGACCGCTGTAaagatgaaaatgtttttgtatCCTCGTTTG
TCCCAGAGAAGCACTTACCTAATAAGCAGCCATCTGCTCTGGATCCATTT
TTAGAACCTCTCATACAGGAACTAGAAGAACTGTTCATAAATGGTTTAGA
AATTGATTACCCACCTGGTGTTTATACTGAGGATGGAGGAAAGTTCACAG
TGAGGTGTATGTTATTATGTTGGACCGGTGATTATCCAGGACAGTGCCAA
GTCGGTAAATTCTCGTGCAAGGGAACTTTTGGTTGTCGTGTTGATAAATG
CAAAGgagAGTCGGTCGAAAATAGCCATACAAAATATTACATTGGGAACC
GCGATAAGTATACGAACCGCtggcaacaaagaaaaattgaggATGAATAT
GACACAATGTATGACATTGAAATGAAGGCCTCAATTCACGCCAAGCTTGC
TGCTGCTACTAAGACCGGATACACTGGCCTTTCCCTTCTTCACAGGCCAT
ATAAATTGTACGGCTTCAACCTCTTTCGAGACATGACTCGTGATGTCATG
CATTTGGTTGCGTTAAACCTGagcaaaaaattattcaaacgCATTTTTGC
CGAATACATTCTCCAAGCTGAGGAATTCAACGAAGAAATGCAAAGTTTCC
CATTGACACCTGagCTCCGAGATGGTCACTGCCCAAGACACGTAGATAAG
TGTAGTTCATGGACAGCAGAGGAATGGAAAAAATTTGCATTTCCTATGGC
AGAAGTACTGTTGAAGGATAAGCTACCAGATAATGAATTTCATTTAGTCT
GGCTTACTGCTCGTATTGTTGAGCTTTTGTTCCACAGAAGAAATGGTTTG
GATTGTCTTCAACTCGAAAAACTTGAGAAGATTTGTTGGAGACGTTTGAT
TCGTTTGGAGGAGGAGATTGGTGGGAAACAGTGTGTTATTACCTGTCACA
ATAGCATACACATCGGTGAAGATTTGCTGAGATTTGCACATTGTGATAAC
CTATGGTGCTTTGNAAATGATCAGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033332XLOC_033332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052729-exon-scaffold_219-1491911889:62122..62841TCONS_00052729-exon-scaffold_219-1491911889:62122..62841Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1510915933:62122..62841TCONS_00052729-exon-scaffold_219-1510915933:62122..62841Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1575043694:62122..62841TCONS_00052729-exon-scaffold_219-1575043694:62122..62841Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1491911889:63286..63456TCONS_00052729-exon-scaffold_219-1491911889:63286..63456Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1510915933:63286..63456TCONS_00052729-exon-scaffold_219-1510915933:63286..63456Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1575043694:63286..63456TCONS_00052729-exon-scaffold_219-1575043694:63286..63456Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1491911889:64957..65118TCONS_00052729-exon-scaffold_219-1491911889:64957..65118Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1510915933:64957..65118TCONS_00052729-exon-scaffold_219-1510915933:64957..65118Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1575043694:64957..65118TCONS_00052729-exon-scaffold_219-1575043694:64957..65118Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1491911889:65448..65804TCONS_00052729-exon-scaffold_219-1491911889:65448..65804Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1510915933:65448..65804TCONS_00052729-exon-scaffold_219-1510915933:65448..65804Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1575043694:65448..65804TCONS_00052729-exon-scaffold_219-1575043694:65448..65804Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1491911889:66217..67070TCONS_00052729-exon-scaffold_219-1491911889:66217..67070Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1510915933:66217..67070TCONS_00052729-exon-scaffold_219-1510915933:66217..67070Clytia hemisphaericaexon
TCONS_00052729-exon-scaffold_219-1575043694:66217..67070TCONS_00052729-exon-scaffold_219-1575043694:66217..67070Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052729-proteinTCONS_00052729-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:62122..67070 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0690564	0.0168352	0.0390946	0.038248	0.13969	0.128782	0.221957	0.207794	0.0581925	0.108121	0	0.137974	0.114818	0.0834679	0.0588188	0.0946824	0.0259202	0.0797021	0	0	0.0333838	0.0244252	0	0.0359925	0.0741428	0.148884	0.0710176	0.025264	0.0383236	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004242Transposase_21
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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