TCONS_00052731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052731
Unique NameTCONS_00052731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1011

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052731 ID=TCONS_00052731|Name=TCONS_00052731|organism=Clytia hemisphaerica|type=transcript|length=1011bp
CTAATATGTGGGCGAAACAACCATAAAGCTAAGTAGTAGAATAATGCAGT
AGTGTTATTCTTAAACTGGGCAAGCCCTGGAAAATGATAGCAAGCATGAT
TTGAAATAGAATTTTTACTTGCACAACTGTCTtagctttgaaattttgaa
ttctttttcaggtgacaaaaaaaaacataaaaaatgaataaatttagTTT
GGTCATCCTTCTGATATTTGGTTTGGTTCAGCAACATGTTGCTCCACCAg
ttgaaaaggaaaagaaagagTTTCAAGATAACATGAGAGGAAATACAGAC
GGTTTATCACACGAACAAGCTCAAGATCAGGAATATTTCAGATATTTAAC
ACAAATTGTTGGTGAACTAGAAAAAGATGCTAAATTCAAAGCAAAGTTAA
ATAATGCTTCGGAAGATGATATTAAAAGTGgaaaaattgctgatttctTC
CCAGAGGTTGATGTCAGTATCAGGCGGAAACTTGATGAAATTAAGCGAAT
GGAAGTTGAATATCAGCGGGATTTGGTTCGTCAAAAGAAAGATCACATGG
CAGGTATTGAGCGCAATTATTGGAACCCAATCCATCATGATAACAAGGAT
TCCTTCGAGATGGCAGATTTAAAGAAACTTTTGTCAAAGcACAACGATAT
GATGAGTGAACAAGACAAAAAACGAAAAGAAGActttaagaaacatgaaa
tgGATAAAGAACACGAgcgaagagaaaaacaaaaaaatatgagTGAAGAA
GAACGCAAAAAGGATGATGAGGAATACAAACAACATCATGAACAAAAACA
TGAATCAATGCATGAACCTGGACATAAGAAACAATTAGAAGAGGTCTGGG
AAAAGGAAGATGGTCTAGATCCTGATAGTTTCGATCCACGAACTTTCTTC
AATTTACACGGTAACGACTTTCATTTGAAAAAACATATCTCAATTTGAAA
AGATTAATTAAAAAAGAACCTTGGAAAGAATCTTTTTAAAGCACTTTTGT
CTTTTTCGTCA
Run BLAST on NCBI

protein sequence of TCONS_00052731-protein

>TCONS_00052731-protein ID=TCONS_00052731-protein|Name=TCONS_00052731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MNKFSLVILLIFGLVQQHVAPPVEKEKKEFQDNMRGNTDGLSHEQAQDQE
YFRYLTQIVGELEKDAKFKAKLNNASEDDIKSGKIADFFPEVDVSIRRKL
DEIKRMEVEYQRDLVRQKKDHMAGIERNYWNPIHHDNKDSFEMADLKKLL
SKHNDMMSEQDKKRKEDFKKHEMDKEHERREKQKNMSEEERKKDDEEYKQ
HHEQKHESMHEPGHKKQLEEVWEKEDGLDPDSFDPRTFFNLHGNDFHLKK
HISI
Run BLAST on NCBI

transcript from alignment at scaffold_219:14389..15922-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052731 ID=TCONS_00052731|Name=TCONS_00052731|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_219:14389..15922- (Clytia hemisphaerica)
CTAATATGTGGGCGAAACAACCATAAAGCTAAGTAGTAGAATAATGCAGT
AGTGTTATTCTTAAACTGGGCAAGCCCTGGAAAATGATAGCAAGCATGAT
TTGAAATAGAATTTTTACTTGCACAACTGTCTTAGCTTTGAAATTTTGAA
TTCTTTTTCAGGTGACAAAAAAAAACATAAAAAATGAATAAATTTAGTTT
GGTCATCCTTCTGATATTTGGTTTGGTTCAGCAACATGTTGCTCCACCAG
TTGAAAAGGAAAAGAAAGAGTTTCAAGATAACATGAGAGGAAATACAGAC
GGTTTATCACACGAACAAGCTCAAGATCAGGAATATTTCAGATATTTAAC
ACAAATTGTTGGTGAACTAGAAAAAGATGCTAAATTCAAAGCAAAGTTAA
ATAATGCTTCGGAAGATGATATTAAAAGTGGAAAAATTGCTGATTTCTTC
CCAGAGGTTGATGTCAGTATCAGGTAAAAACTTTGTTTTGCTTGCAGAAT
CTGGTTCACTATTGAAATTTTCCACACAAGAGCAGCTTTTTTTGACCTGA
TTCAACATGTTTTACTTTTTTATACCTTACCAGTTCAAGCTTACTTGGCT
TAAAACTATTATCTTACTCTTTCATCAGCTCTCAAATGATTATAAATTTA
TAGGCGGAAACTTGATGAAATTAAGCGAATGGAAGTTGAATATCAGCGGG
ATTTGGTTCGTCAAAAGAAAGATCACATGGCAGGTATTGAGCGCAATTAT
TGGAACCCAATCCATCATGATAACAAGGATTCCTTCGAGATGGCAGATTT
AAAGAAACTTTTGTCAAAGGTAAGACTTCTTTATTTTTGTATATCTTTTT
CTTTTTGTTGGATTTTAAAATAATTTAATTTTAAAGCAGGTTTACTCTTG
AAGATTTAACTTTTTCGTGATGTGGTTTTAGCAAATGATCATGAAATTTT
CTTTAAGCACAACGATATGATGAGTGAACAAGACAAAAAACGAAAAGAAG
ACTTTAAGAAACATGAAATGGATAAAGAACACGAGCGAAGAGAAAAACAA
AAAAATATGAGTGAAGAAGAACGCAAAAAGGATGATGAGGAATACAAACA
ACATCATGAACAAAAACATGAATCAATGCATGAACCTGTGAGGATGATTT
TAAAATTATATAAAGTTTTAAATGCTTTTCAGTATTTCTTTGGATTCTTA
TAACTAGATAAGTAAATACACTACAAGCCTAAAGAAATGGTGAAGAAAAA
ATCATTTATTGTTCAAATGTTTGACTTGACTAACATTTCAATGTTTATTC
AGCTGATTTGATCATTTTTTTCTTTTTCTTTCTTTTTCATAGGGACATAA
GAAACAATTAGAAGAGGTCTGGGAAAAGGAAGATGGTCTAGATCCTGATA
GTTTCGATCCACGAACTTTCTTCAATTTACACGGTAACGACTTTCATTTG
AAAAAACATATCTCAATTTGAAAAGATTAATTAAAAAAGAACCTTGGAAA
GAATCTTTTTAAAGCACTTTTGTCTTTTTCGTCA

Coding sequence (CDS) from alignment at scaffold_219:14389..15922-

>TCONS_00052731 ID=TCONS_00052731|Name=TCONS_00052731|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_219:14389..15922- (Clytia hemisphaerica)
GGACATAAGAAACAATTAGAAGAGGTCTGGGAAAAGGAAGATGGTCTAGA
TCCTGATAGTTTCGATCCACGAACTTTCTTCAATTTACACGGTAACGACT
TTCATTTGAAAAAACATATCTCAATTTGACACAACGATATGATGAGTGAA
CAAGACAAAAAACGAAAAGAAGACTTTAAGAAACATGAAATGGATAAAGA
ACACGAGCGAAGAGAAAAACAAAAAAATATGAGTGAAGAAGAACGCAAAA
AGGATGATGAGGAATACAAACAACATCATGAACAAAAACATGAATCAATG
CATGAACCTGCGGAAACTTGATGAAATTAAGCGAATGGAAGTTGAATATC
AGCGGGATTTGGTTCGTCAAAAGAAAGATCACATGGCAGGTATTGAGCGC
AATTATTGGAACCCAATCCATCATGATAACAAGGATTCCTTCGAGATGGC
AGATTTAAAGAAACTTTTGTCAAAGATGAATAAATTTAGTTTGGTCATCC
TTCTGATATTTGGTTTGGTTCAGCAACATGTTGCTCCACCAGTTGAAAAG
GAAAAGAAAGAGTTTCAAGATAACATGAGAGGAAATACAGACGGTTTATC
ACACGAACAAGCTCAAGATCAGGAATATTTCAGATATTTAACACAAATTG
TTGGTGAACTAGAAAAAGATGCTAAATTCAAAGCAAAGTTAAATAATGCT
TCGGAAGATGATATTAAAAGTGGAAAAATTGCTGATTTCTTCCCAGAGGT
TGATGTCAGTATCAGGGACATAAGAAACAATTAGAAGAGGTCTGGGAAAA
GGAAGATGGTCTAGATCCTGATAGTTTCGATCCACGAACTTTCTTCAATT
TACACGGTAACGACTTTCATTTGAAAAAACATATCTCAATTTGACACAAC
GATATGATGAGTGAACAAGACAAAAAACGAAAAGAAGACTTTAAGAAACA
TGAAATGGATAAAGAACACGAGCGAAGAGAAAAACAAAAAAATATGAGTG
AAGAAGAACGCAAAAAGGATGATGAGGAATACAAACAACATCATGAACAA
AAACATGAATCAATGCATGAACCTGCGGAAACTTGATGAAATTAAGCGAA
TGGAAGTTGAATATCAGCGGGATTTGGTTCGTCAAAAGAAAGATCACATG
GCAGGTATTGAGCGCAATTATTGGAACCCAATCCATCATGATAACAAGGA
TTCCTTCGAGATGGCAGATTTAAAGAAACTTTTGTCAAAGATGAATAAAT
TTAGTTTGGTCATCCTTCTGATATTTGGTTTGGTTCAGCAACATGTTGCT
CCACCAGTTGAAAAGGAAAAGAAAGAGTTTCAAGATAACATGAGAGGAAA
TACAGACGGTTTATCACACGAACAAGCTCAAGATCAGGAATATTTCAGAT
ATTTAACACAAATTGTTGGTGAACTAGAAAAAGATGCTAAATTCAAAGCA
AAGTTAAATAATGCTTCGGAAGATGATATTAAAAGTGGAAAAATTGCTGA
TTTCTTCCCAGAGGTTGATGTCAGTATCAGGGACATAAGAAACAATTAGA
AGAGGTCTGGGAAAAGGAAGATGGTCTAGATCCTGATAGTTTCGATCCAC
GAACTTTCTTCAATTTACACGGTAACGACTTTCATTTGAAAAAACATATC
TCAATTTGACACAACGATATGATGAGTGAACAAGACAAAAAACGAAAAGA
AGACTTTAAGAAACATGAAATGGATAAAGAACACGAGCGAAGAGAAAAAC
AAAAAAATATGAGTGAAGAAGAACGCAAAAAGGATGATGAGGAATACAAA
CAACATCATGAACAAAAACATGAATCAATGCATGAACCTGCGGAAACTTG
ATGAAATTAAGCGAATGGAAGTTGAATATCAGCGGGATTTGGTTCGTCAA
AAGAAAGATCACATGGCAGGTATTGAGCGCAATTATTGGAACCCAATCCA
TCATGATAACAAGGATTCCTTCGAGATGGCAGATTTAAAGAAACTTTTGT
CAAAGATGAATAAATTTAGTTTGGTCATCCTTCTGATATTTGGTTTGGTT
CAGCAACATGTTGCTCCACCAGTTGAAAAGGAAAAGAAAGAGTTTCAAGA
TAACATGAGAGGAAATACAGACGGTTTATCACACGAACAAGCTCAAGATC
AGGAATATTTCAGATATTTAACACAAATTGTTGGTGAACTAGAAAAAGAT
GCTAAATTCAAAGCAAAGTTAAATAATGCTTCGGAAGATGATATTAAAAG
TGGAAAAATTGCTGATTTCTTCCCAGAGGTTGATGTCAGTATCAGGGACA
TAAGAAACAATTAGAAGAGGTCTGGGAAAAGGAAGATGGTCTAGATCCTG
ATAGTTTCGATCCACGAACTTTCTTCAATTTACACGGTAACGACTTTCAT
TTGAAAAAACATATCTCAATTTGACACAACGATATGATGAGTGAACAAGA
CAAAAAACGAAAAGAAGACTTTAAGAAACATGAAATGGATAAAGAACACG
AGCGAAGAGAAAAACAAAAAAATATGAGTGAAGAAGAACGCAAAAAGGAT
GATGAGGAATACAAACAACATCATGAACAAAAACATGAATCAATGCATGA
ACCTGCGGAAACTTGATGAAATTAAGCGAATGGAAGTTGAATATCAGCGG
GATTTGGTTCGTCAAAAGAAAGATCACATGGCAGGTATTGAGCGCAATTA
TTGGAACCCAATCCATCATGATAACAAGGATTCCTTCGAGATGGCAGATT
TAAAGAAACTTTTGTCAAAGATGAATAAATTTAGTTTGGTCATCCTTCTG
ATATTTGGTTTGGTTCAGCAACATGTTGCTCCACCAGTTGAAAAGGAAAA
GAAAGAGTTTCAAGATAACATGAGAGGAAATACAGACGGTTTATCACACG
AACAAGCTCAAGATCAGGAATATTTCAGATATTTAACACAAATTGTTGGT
GAACTAGAAAAAGATGCTAAATTCAAAGCAAAGTTAAATAATGCTTCGGA
AGATGATATTAAAAGTGGAAAAATTGCTGATTTCTTCCCAGAGGTTGATG
TCAGTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033334XLOC_033334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052731-exon-scaffold_219-1575043694:15450..15922TCONS_00052731-exon-scaffold_219-1575043694:15450..15922Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1575043694:15104..15269TCONS_00052731-exon-scaffold_219-1575043694:15104..15269Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1575043694:14786..14965TCONS_00052731-exon-scaffold_219-1575043694:14786..14965Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1575043694:14389..14580TCONS_00052731-exon-scaffold_219-1575043694:14389..14580Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1510915933:15450..15922TCONS_00052731-exon-scaffold_219-1510915933:15450..15922Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1510915933:15104..15269TCONS_00052731-exon-scaffold_219-1510915933:15104..15269Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1510915933:14786..14965TCONS_00052731-exon-scaffold_219-1510915933:14786..14965Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1510915933:14389..14580TCONS_00052731-exon-scaffold_219-1510915933:14389..14580Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1491911889:15450..15922TCONS_00052731-exon-scaffold_219-1491911889:15450..15922Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1491911889:15104..15269TCONS_00052731-exon-scaffold_219-1491911889:15104..15269Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1491911889:14786..14965TCONS_00052731-exon-scaffold_219-1491911889:14786..14965Clytia hemisphaericaexon
TCONS_00052731-exon-scaffold_219-1491911889:14389..14580TCONS_00052731-exon-scaffold_219-1491911889:14389..14580Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052731-proteinTCONS_00052731-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:14389..15922 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
169.67	169.446	127.041	115.967	130.387	97.864	140.315	144.835	146.089	109.025	156.331	178.288	173.826	165.535	159.005	169.526	92.8642	127.746	193.334	197.16	174.406	160.408	143.316	149.877	181.653	203.982	71.8705	73.1828	157.768	186.593
Blast
[Close]
BLAST of TCONS_00052731 vs. Swiss-Prot (Human)
Match: NUCB2 (Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.105e-32
Identity = 89/244 (36.48%), Postives = 130/244 (53.28%), Query Frame = 1 
Query:  202 VILLIFGLVQQHVAPPVEKEKKEFQDNMRGNTDGLSHEQAQDQEYFRYLTQIVGELEKDAKFKAKLNNASEDDIKSGKIADFFPEVDVSIRRKLDEIKRMEVEYQRDLVRQKKDHMAGIERNY------WNPIHHDNKDSFEMADLKKLLSKHNDMMSEQDKKRKEDFKKHEMDKEHERRE--KQKNMSXXXXXXXXXXXXXXXXXXXXSMHEPGHKKQLEEVWEKEDGLDPDSFDPRTFFNLH 909
              LLI  L+    A P++ +K + Q N+                Y  YL Q++  LE D  F+ KL  A  ++IKSG+++     V   +R KLDE+KR EV   R L++ K D +  I  ++      ++ ++H N D FE  DL  L+      +   DK R E+FKK+EM KEHERRE  K  N  + + ++   E  +   + H  ++ PG K QL+EVWE+ DGLDP+ FDP+TFF LH
Sbjct:   11 CFLLITCLLTALEAVPIDIDKTKVQ-NIHPVESAKIEPPDTGLYYDEYLKQVIDVLETDKHFREKLQKADIEEIKSGRLSKELDLVSHHVRTKLDELKRQEVGRLRMLIKAKLDSLQDIGMDHQALLKQFDHLNHLNPDKFESTDLDMLIKAATSDLEHYDKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESKFEEMKKKHENHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLH 253
The following BLAST results are available for this feature:
BLAST of TCONS_00052731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUCB29.105e-3236.48Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2[more]
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