TCONS_00052736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052736
Unique NameTCONS_00052736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052736 ID=TCONS_00052736|Name=TCONS_00052736|organism=Clytia hemisphaerica|type=transcript|length=229bp
TTATAGCTAGTCTTACTGCTTGCCTTGAAATTGTAATACACATAACTTAG
TCCTTTGCAAAAGCTTTCTGGAAAAAGTTAAGCCTCTTGGCACTATTTCA
GAGCGAAAATAAGAACTCATAGTgcatactctcgggtgcctaataaacgt
acagaccaaaataaacgtacatgggGGATtaaattggaattaataaacgt
acaggctgaaataaaccTACAGGCGAgaa
Run BLAST on NCBI

transcript from alignment at scaffold_219:22674..22902

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052736 ID=TCONS_00052736|Name=TCONS_00052736|organism=Clytia hemisphaerica|type=transcript|length=229bp|location=Sequence derived from alignment at scaffold_219:22674..22902 (Clytia hemisphaerica)
ttcTCGCCTGTAggtttatttcagcctgtacgtttattaattccaattta
ATCCcccatgtacgtttattttggtctgtacgtttattaggcacccgaga
gtatgcACTATGAGTTCTTATTTTCGCTCTGAAATAGTGCCAAGAGGCTT
AACTTTTTCCAGAAAGCTTTTGCAAAGGACTAAGTTATGTGTATTACAAT
TTCAAGGCAAGCAGTAAGACTAGCTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033339XLOC_033339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052736-exon-scaffold_219-1491911889:22674..22902TCONS_00052736-exon-scaffold_219-1491911889:22674..22902Clytia hemisphaericaexon
TCONS_00052736-exon-scaffold_219-1510915933:22674..22902TCONS_00052736-exon-scaffold_219-1510915933:22674..22902Clytia hemisphaericaexon
TCONS_00052736-exon-scaffold_219-1575043694:22674..22902TCONS_00052736-exon-scaffold_219-1575043694:22674..22902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:22674..22902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.21982	3.13983	1.21521	0	2.89474	12.4511	8.27917	6.45905	6.33099	5.60139	1.08737	5.71835	2.8552	3.28291	6.0944	0.654022	5.63991	5.78073	0	7.82155	9.33931	10.6292	2.46119	3.35637	10.3709	17.0015	8.83002	2.03481	6.16347	12.1369
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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