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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052740 ID=TCONS_00052740|Name=TCONS_00052740|organism=Clytia hemisphaerica|type=transcript|length=1000bp
tgaacatctccgccactgcttactccacccgaatttatcacgcctctcct
aaactattcccatttttagtgatcttgtgtagaccaTAGGATCGTCTAAT
GCATAGGTTAATCTAAAGAACTTCCGTTGTAGGCCCAAAAATGTGTACAT
TAGATTAGTTTTGAGCAGACATTGAGAATCGGCGAGATTTGGAAACTTTA
TGAACTATGGGAGCTCAACTGTATTCCAAAGGAAACTTATATGAATGAAG
AGGAGTGTGtccattttattttgtattaaaTCGTaggaaaactgttaaaa
atatattttaaggaTGTAACATATGAGCTTATGCGACAGGTTTTATATAa
acgaaaaattgtaaaatataaaaaaaactagTTTTCTTTTTAGCTCAATC
CCCAAACATCATTTAACACTGTAAAAAAACTTCGAGGAAAGATTGAAAGT
TTTGTTCTTCTTTTAAGAAATCTAAATCGATTGATTGAAGCCATGGCCAA
AAACTCTAttcgagtgaaaaaaaaaagtttatcagAGATAGCTTGATTCA
TTTGGACATACTTTGCGACGATCTATACCTAACAACAGTGAGAATGAAAA
TTTACGCAAGTGATTTAAATTTCTGGTTAAACACATACAAGACTCGTCAG
AAGGTAGTGATCCATTTTCGAGCCTGAGCTTTAATACTTTAGTTCactaa
atcatcaaaatttatgaataaacatatcaaaattaaTATACAGTGCGCCC
GGAAAAAAAACAGAACATTTAGATTTATAGGAATGTAAATCCATGAAATC
ATTTATCTTGCTGAGCTTGGAATTTGAATGGGATGGAAATTTAATTATAG
GGAAGGATGGGAATCAATTCTCAAGTCGATTCAACAGTTTATGAAAAATC
AAACCAAGACATAAGGTCATAAAATCGGCATATAAATAAATTCATTAATA
GCATTTTATTCTgttattgggctcttccagaaaatgtccgtacatggggg Run BLAST on NCBI transcript from alignment at scaffold_219:83898..84897 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052740 ID=TCONS_00052740|Name=TCONS_00052740|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at scaffold_219:83898..84897 (Clytia hemisphaerica)
cccccatgtacggacattttctggaagagcccaataacAGAATAAAATGC
TATTAATGAATTTATTTATATGCCGATTTTATGACCTTATGTCTTGGTTT
GATTTTTCATAAACTGTTGAATCGACTTGAGAATTGATTCCCATCCTTCC
CTATAATTAAATTTCCATCCCATTCAAATTCCAAGCTCAGCAAGATAAAT
GATTTCATGGATTTACATTCCTATAAATCTAAATGTTCTGTTTTTTTTCC
GGGCGCACTGTATAttaattttgatatgtttattcataaattttgatgat
ttagtGAACTAAAGTATTAAAGCTCAGGCTCGAAAATGGATCACTACCTT
CTGACGAGTCTTGTATGTGTTTAACCAGAAATTTAAATCACTTGCGTAAA
TTTTCATTCTCACTGTTGTTAGGTATAGATCGTCGCAAAGTATGTCCAAA
TGAATCAAGCTATCTctgataaacttttttttttcactcgaaTAGAGTTT
TTGGCCATGGCTTCAATCAATCGATTTAGATTTCTTAAAAGAAGAACAAA
ACTTTCAATCTTTCCTCGAAGTTTTTTTACAGTGTTAAATGATGTTTGGG
GATTGAGCTAAAAAGAAAActagttttttttatattttacaatttttcgt
tTATATAAAACCTGTCGCATAAGCTCATATGTTACAtccttaaaatatat
ttttaacagttttcctACGAtttaatacaaaataaaatggaCACACTCCT
CTTCATTCATATAAGTTTCCTTTGGAATACAGTTGAGCTCCCATAGTTCA
TAAAGTTTCCAAATCTCGCCGATTCTCAATGTCTGCTCAAAACTAATCTA
ATGTACACATTTTTGGGCCTACAACGGAAGTTCTTTAGATTAACCTATGC
ATTAGACGATCCTAtggtctacacaagatcactaaaaatgggaatagttt
aggagaggcgtgataaattcgggtggagtaagcagtggcggagatgttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052740-exon-scaffold_219-1491911889:83898..84897 | TCONS_00052740-exon-scaffold_219-1491911889:83898..84897 | Clytia hemisphaerica | exon |
| TCONS_00052740-exon-scaffold_219-1510915933:83898..84897 | TCONS_00052740-exon-scaffold_219-1510915933:83898..84897 | Clytia hemisphaerica | exon |
| TCONS_00052740-exon-scaffold_219-1575043694:83898..84897 | TCONS_00052740-exon-scaffold_219-1575043694:83898..84897 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_219 | supercontig | scaffold_219:83898..84897 . |
Blast
The following BLAST results are available for this feature:
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