TCONS_00052752 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052752
Unique Name	TCONS_00052752
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1007

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_22:144219..149731+

transcript sequence

>TCONS_00052752 ID=TCONS_00052752|Name=TCONS_00052752|organism=Clytia hemisphaerica|type=transcript|length=1007bp
cagggctcgaaataacggtcggacatcggacattgtccgacccaaatagc
ttcatgtccgacccaaaaatcataattttcaagctacagcaaccctgatc
ggacattttgtccgacccacttggaatcgttatttcgaggcttccatttt
tttcttcattttttctaagcaaaaacaaacaaaaatttataattcacaAT
ATTCAAATCTGTTCAAATCAACACAAAATCTAAATATTagtcaaaaaata
caaacaaaagcATGGAATCGATATCAAAAGATTGGGTGGATATGGCTGAT
ACAGGGACATGTGATTCCCGATGGATCTTTCGTGATTACAAATGTGAGAA
ATACATGTTTGCTGAAGACTACGATCGCAATGAAATCAAAATGAGAGTAT
TGGAATCCCATAGAGTCAAAGATACTATTGAAAAGAGAAAACGAGAGACG
GGCATTCACCAAAGTCAATCACTTCAAGAAGCAGCACAGATCATAGATGA
AATCGCTCACACATTCAGTCTAGGGACGATCAGATTCATGGCTTATTCAT
TGATTAAGATTATCAAGAAATTATTCCAAAGAGTCTTGGTCAACAAAGAG
GGAATAAAGCAATTCAATGAATGCGCAAAGATGACACCCATTGTCTTAGT
TCCAACACATAGCAGCTACTTTGATTTCTTGCTTGCGTCAGCCATTTGTT
TTGCACTCGACCTACCTTTACCAGCAATTGTGGCCGGACAAGattttttg
aACATAGCAGTTGTTAACCATTTGCTTCGTGGTTCGGGAGCTTTCTATAT
GAGACGATCGTTTGCGTCGGATACGTTTTACAGAAGCATCTTCACTGAAT
ATGTTCAACAAATACTGTGTATTGGTGAGCGACCTGTTGAATTCTTTCCT
GAAGGAACGAGGAGTCGAAGTGGAAAAGCTCTCCAACCGAAACTTGgGCT
TTTATCCATGGTACTGGAAAGTTGTTTTCATGGCTTCGTGAATGACGTGT
CTTTCAT

Run BLAST on NCBI

transcript from alignment at scaffold_22:144219..149731+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052752 ID=TCONS_00052752|Name=TCONS_00052752|organism=Clytia hemisphaerica|type=transcript|length=5513bp|location=Sequence derived from alignment at scaffold_22:144219..149731+ (Clytia hemisphaerica)
cagggctcgaaataacggtcggacatcggacattgtccgacccaaatagc
ttcatgtccgacccaaaaatcataattttcaagctacagcaaccctgatc
ggacattttgtccgacccacttggaatcgttatttcgaggcttccatttt
tttcttcattttttctaagcaaaaacaaacaaaaatttataattcacaAT
ATTCAAATCTGTTCAAATCAACACAAAATCTAAATATTagtcaaaaaata
caaacaaaagcATGGAATCGATATCAAAAGATTGGGTGGATATGGCTGAT
ACAGGGACATGTGATTCCCGATGGATCTTTCGTGATTACAAATGTGAGAA
ATACATGTTTGCTGAAGACTACGATCGCAATGAAATCAAAATGAGAGTAT
TGGAATCCCATAGAGTCAAAGATACTATTGAAAAGGCAGgttcattttga
tttgagtCTACCCTATATAGTATAGTTCTTTAAACATTCTTTAAACATTC
TTTAAACACAGTTGTGTGTATGCAACGTTTCGACGGTTTGTctaattttg
tttgtttctctAATTTATTTTTAGAACCTTGGCTTGGATAACATCCCCAA
TTAATAATGATTTCCATTTAATCATTTAGAGAAAACGAGAGACGGGCATT
CACCAAAGTCAATCACTTCAAGAAGCAGCACAGATCATAGATGAAATCGC
TCACACGNAAAagaatgtttattttttacaaactttttctgttttgttta
tattatcCGAAAGGTAAAGAATTGCACAATTAGGGTGGAGTGTGTTCTGC
AAAACCTTTGATCAATTTCTTAAGTCATGATTTCACAGAAATTTACAAAA
GGTTAACAACAAAAATGAATTTGTTGGTTTCCTTAATTGTGTTCACACAA
AGACTTTACTTGCTGTGCGAAAGAATTATGTTCGTTTTTTGTACTCCTGA
AGTTTATAAGAgtttgaaaagcttttaacaattACAAAGGTTGGCTTTTG
GTTTAGTATATAATCTTTGCACattcagggctcgaaataacggtcggaca
tcggacattgtccgacccaaatagcttcatgtccgacccaaaaatcataa
ttttcaagctacagcaaccctgatcggacattttgtccgacccacttgga
atcgttatttcgaggcttccatttttttcttcattttttctaagcaaaaa
caaacaaaaatttataattcacaATATTCAAATCTGTTCAAATCAACACA
AAATCTAAATATTagtcaaaaaatacaaacaaaagcATGGAATCGATATC
AAAAGATTGGGTGGATATGGCTGATACAGGGACATGTGATTCCCGATGGA
TCTTTCGTGATTACAAATGTGAGAAATACATGTTTGCTGAAGACTACGAT
CGCAATGAAATCAAAATGAGAGTATTGGAATCCCATAGAGTCAAAGATAC
TATTGAAAAGGTAGgttcattttgatttgagtCTACCCTATAGTATAGTT
ctttaaacattaaaaacataGTTGTGTGTATGCAACGTTTCCACGGTTTG
TctaattttgtttgtttctctAATTTATTTGTTAGAACCTTGGCTTGGAT
AACATCCCCAATTAATAATGATTTCTATTTAATCATTTAGAGAAAACGAG
AGACGGGCATTCACCAAAGTCAATCACTTCAAGAAGCAGCACAGATCATA
GATGAAATCGCTCACACATTCAGTCTAGGGACGATCAGATTCATGGCTTA
TTCATTGATTAAGATTATCAAGAAATTATTCCAAAGAGTCTTGGTCAACA
AAGAGGGAATAAAGCAAGTAAGAATCTATTCGTCCATTCATCTATTCGTT
TATATATTCGTCCATTTATCCANTAAAGCAAGTAAGAATCGCATTCTTCA
TCCGTCCATTCGTCCATTCATCTATTCGTTTATCTATTCGTCCATTCATC
CATTTAtccattcgtttatctatttgTCTATTCATCCATTCGTTTATCCA
TTCGCCTATTCATCAATTCGTTTATCCATTCGTCCATTCATCCATTCGTT
TATCCATTCGTCTATTCGTTCATTCGTTTATCCATTCGTTCATCCATTCA
TCCATCCGTCCATCCATTCATTTGACCCTTCATGAAGCTTTCCTACTTAT
TTGAAGATTCTGATTTGCAGATTCTGATTTGCAGATCGAAATCTCAGATT
CATTAACTTGTTctccatttttcttttacaaTAGTTCAATGAATGCGCAA
AGATGACACCCATTGTCTTAGTTCCAACACATAGCAGCTACTTTGATTTC
TTGCTTGCGTCAGCCATTTGTTTTGCACTCGACCTACCTTTACCAGCAAT
TGTGGCCGGACAAGGTACGTCAATTTCTGATTTATCAAATGTTGGACTTA
TTATTAACCTTTCagtaaaaagaattttcaaatactTAAAACAATCATCC
CCTCAAAATTGTTTTCCCCATGAGCTATTAgaattactgtaatttttttc
tatcataagtattttgaaaatatttttgccaaaatcttATAGTTAAACTA
AATGAAATGTCTCATACATCTATATACAGTCTGAATCCATTGAATTCTTT
TCCCTTTTTCCACCCTTTGTGTTTATTTCCACTCTGAAAATCAATGTTGC
ATGTTTTGAACTCAAAACTTTTACCAACAAGAAATTGTAGGTAGGTTGAT
TAGATGTTTACATTTCTTTAGTCATAGAGATTATCAGTGTTGTGTTTTTC
TTAACgattcaattttgaaaatatgagtACAATCAGAAGGTCTCAGTACA
AATGGTGCCCggagggtactagggttgcgagctgatgggggcggggtgcc
gcccgactttcgaactttggacccttaccgggacttaAACGGAGAAAACA
AAGgtaaattttgggaattttacgacccttaccgggacaaatttgaccaa
ttttgacaaaatttcgatctttcaggggataaaaattttcccatttttcc
tACCcatagtgggactgaaatttgattttctggtttttccgacccttagc
gggactttggaagtccaaaaaaggtacccttaagggcggcacataccgta
ccctcaatttgcctaagtaccccccccctctGGGAAATGGTGGCGGAAAA
CATCCTTCACTGTGCCCGATGGTGTGCGAAgtatctctcgaaacgtagcc
ataCGTAAATCTCCTAATCCAAGCCATGATAAACTTCTGATGCGAATATC
ACTGGGTCGACAAACTCAAACCGGTTTAGAGATTAAACAATctacacgtt
ttattttttattagaacccagtttataagaacattgaggctaaaatttgt
cgaaaaattaagaacatcgtaagaacatgcacAGCCTCAGTttgggaaaa
aaatgacaagaaactacaattttttcttcttttcaagtagttttaaccga
acttagggatggattttctaaaatcgagagtcaaatattgtccaaatNac
ccagcctcagtttggaaaaaaaatgacaagaaactacaattttttcctct
tttcaagcagttttaaccgaacttagggatggattttctaaaatcgagag
tcaaatattgtccaaatttaaCCAATTTTaggtgctctttattttgcatg
atattgtcgatttagagtagtctgaaaaatcaagaatacatttaagaaca
ttttaggctgaaaactgccaaaaaaataagcacatccaagATCAGCCaaa
tttaggtgttctaataaaaaaaaaacgtgtattcccttctttttccagat
tttttgaACATAGCAGTTGTTAACCATTTGCTTCGTGGTTCGGGAGCTTT
CTATATGAGACGATCGTTTGCGTCGGATACGTTTTACAGAAGCATCTTCA
CTGAATATGTTCAACAAATACTGTGTATTGGTGAGCGACCTGTTGAATTC
TTTCCTGAAGGAACGAGGAGTCGAAGTGGAAAAGCTCTCCAACCGAAACT
TGGTAAGTTACGATTCATGACGTAACGGtttaattcttgatatgcgcgag
taaaaagattacatcatttttCATATCNTGGTTTAATTCTTGATAGGCGT
AAGTAAAAAGAGTACATCATTTTCATATCGGAGACAACCGAGAGAACCGT
AATCTGACCCGTGTGTTGCTATTTTTAGTGACACTCAAGGCTCAAATTCC
GgtgttttcgggtgtttccgacaAGGAAAATGACTTAATCTTGACTGACG
CATATGACGGAAGCATAAAAAATAACCCTGGCGTCTGCTTACTAGTTTTG
CATACactctttttattttataagaacaacgaggctcaaaatcgccgaaa
ataagaacagtttgaCAATAGTGCTGAGCCTGGAATTGCTCCTAGCTCCA
AGCAATTTAGGGATCACAGTAGTAAAAATTTCCCTACAAATAAGGGAAGA
TATGAACAGTTTGAGGCTTGtggtgccaaaaaaataagatggGTGGAGCC
TCATCAAAAATatactgattcttataaaaacaatagtATTGTTCAGATTC
AAAATAAGTGACAAACACCAAGTCGTTTTTGGGCGCTTCCgtttaaaaca
ttacgtcatgaatatcactaATTGAGCGGTcaagattattttatttttat
gcaTCCTTTTGTGGTGGAAGTTTCAAGTTGTTCAATCTTTATAGTATAGC
AAGTTTGCGAACGCACTCGATGACTCCTCTTCCGAATCTTTGCGGGACCA
AAGATCTCGTACTTAGTACCGGGTGTGTCAAAAAAACGGTAAGCTTTTAT
AATAGGCTCAGTGTcatatttgcaaaattttatgagcataagtagaaaaa
gctacgtcaaaatttcaattttaggcccgttttttttttacacacCCGGT
Acaacaattttgtttttaaataagagtgatattgtttgcttactcatcaa
ttttgatttacgCAAGCTTTTTGCTATTgcattgacacgaatgtggagca
agattgatcagaaagaggaaaagaaaaacaattattttgcttatatatgt
aaaaacaaaatctttaatgcCTCTCTGTCTTCTACTTTTTGTGTCAACTG
TTATGCAGAGAAGcagcttttgttttgaaattaatgtTTAACAAAGTTAT
TGTTAGGTTCAAGGGGATTTTTGAATGGGTAGCCAAATTCTTGAAACATC
TTTTCTTCTAAAGTGACaatgaacatatttttgtattttaagtctcgata
actcgaacacgcacggggaacgaAAATTTGTTCATGTTATGGAAATCTCG
AGTTATGgaaccttttttattttagtttattaGGCATTCTTAACTGAAGG
AACCAGGAAACTTGTTCGGGTACAGAGACATTCGcctaatagaggttcga
gttacggagactctactgtataacttttaatttatcttttctttttttgt
aggGCTTTTATCCATGGTACTGGAAAGTTGTTTTCATGGCTTCGTGAATG
ACGTGTCTTTCAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033355	XLOC_033355	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:144219..149731 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27132	3.53173	2.24128	1.89459	2.90726	2.10854	3.68946	5.83079	1.38308	2.63813	1.74336	1.80718	2.28277	2.17854	2.0075	1.75864	4.93398	3.65212	3.45226	2.21068	5.27724	5.32502	5.58728	6.55193	0.249946	1.39679	3.45786	2.69693	7.30337	4.071

Blast

[Close]

BLAST of TCONS_00052752 vs. Swiss-Prot (Human)
Match: GNPAT (Dihydroxyacetone phosphate acyltransferase OS=Homo sapiens GN=GNPAT PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.087e-53
Identity = 92/205 (44.88%), Postives = 134/205 (65.37%), Query Frame = 1

Query:  382 EIKMRVLESHRVKDTIEKRKRETGIHQSQSLQEAAQIIDEIAHTFSLGTIRFMAYSLIKIIKKLFQRVLVNKEGIKQFNECAKMTPIVLVPTHSSYFDFLLASAICFALDLPLPAIVAGQDFLNIAVVNHLLRGSGAFYMRRSFASDTFYRSIFTEYVQQILCIGERPVEFFPEGTRSRSGKALQPKLGLLSMVLESCFHGFVND 996
            +IK  VL S  +   I++  +E+        +E ++I+DE++H   LG IRF A++L K+ K++F +V VN+EGI++     +  P+VL+P+H SY DFL+ S + +  DLP+P I AG DFL + +V  LLR SGAF+MRR+F  +  Y ++F+EYV+ +L  G  PVEFF EGTRSRS K L PK GLL++V+E  F   V D
Sbjct:   70 DIKCSVLNSEEIHYVIKQLSKESLQSVDVLREEVSEILDEMSHKLRLGAIRFCAFTLSKVFKQIFSKVCVNEEGIQKLQRAIQEHPVVLLPSHRSYIDFLMLSFLLYNYDLPVPVIAAGMDFLGMKMVGELLRMSGAFFMRRTFGGNKLYWAVFSEYVKTMLRNGYAPVEFFLEGTRSRSAKTLTPKFGLLNIVMEPFFKREVFD 274

The following BLAST results are available for this feature:

BLAST of TCONS_00052752 vs. Swiss-Prot (Human)

BLAST of TCONS_00052752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GNPAT	5.087e-53	44.88	Dihydroxyacetone phosphate acyltransferase OS=Homo...	[more]

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TCONS_00052752 (transcript) - C. hemisphaerica