TCONS_00052754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052754
Unique NameTCONS_00052754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052754 ID=TCONS_00052754|Name=TCONS_00052754|organism=Clytia hemisphaerica|type=transcript|length=845bp
ttctaagcaaaaacaaacaaaaatttataattcacaATATTCAAATCTGT
TCAAATCAACACAAAATCTAAATATTagtcaaaaaatacaaacaaaagcA
TGGAATCGATATCAAAAGATTGGGTGGATATGGCTGATACAGGGACATGT
GATTCCCGATGGATCTTTCGTGATTACAAATGTGAGAAATACATGTTTGC
TGAAGACTACGATCGCAATGAAATCAAAATGAGAGTATTGGAATCCCATA
GAGTCAAAGATACTATTGAAAAGAGAAAACGAGAGACGGGCATTCACCAA
AGTCAATCACTTCAAGAAGCAGCACAGATCATAGATGAAATCGCTCACAC
ATTCAGTCTAGGGACGATCAGATTCATGGCTTATTCATTGATTAAGATTA
TCAAGAAATTATTCCAAAGAGTCTTGGTCAACAAAGAGGGAATAAAGCAA
TTCAATGAATGCGCAAAGATGACACCCATTGTCTTAGTTCCAACACATAG
CAGCTACTTTGATTTCTTGCTTGCGTCAGCCATTTGTTTTGCACTCGACC
TACCTTTACCAGCAATTGTGGCCGGACAAGattttttgaACATAGCAGTT
GTTAACCATTTGCTTCGTGGTTCGGGAGCTTTCTATATGAGACGATCGTT
TGCGTCGGATACGTTTTACAGAAGCATCTTCACTGAATATGTTCAACAAA
TACTGTGTATTGGTGAGCGACCTGTTGAATTCTTTCCTGAAGGAACGAGG
AGTCGAAGTGGAAAAGCTCTCCAACCGAAACTTGgGCTTTTATCCATGGT
ACTGGAAAGTTGTTTTCATGGCTTCGTGAATGACGTGTCTTTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_22:145406..149731+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052754 ID=TCONS_00052754|Name=TCONS_00052754|organism=Clytia hemisphaerica|type=transcript|length=4326bp|location=Sequence derived from alignment at scaffold_22:145406..149731+ (Clytia hemisphaerica)
ttctaagcaaaaacaaacaaaaatttataattcacaATATTCAAATCTGT
TCAAATCAACACAAAATCTAAATATTagtcaaaaaatacaaacaaaagcA
TGGAATCGATATCAAAAGATTGGGTGGATATGGCTGATACAGGGACATGT
GATTCCCGATGGATCTTTCGTGATTACAAATGTGAGAAATACATGTTTGC
TGAAGACTACGATCGCAATGAAATCAAAATGAGAGTATTGGAATCCCATA
GAGTCAAAGATACTATTGAAAAGGTAGgttcattttgatttgagtCTACC
CTATAGTATAGTTctttaaacattaaaaacataGTTGTGTGTATGCAACG
TTTCCACGGTTTGTctaattttgtttgtttctctAATTTATTTGTTAGAA
CCTTGGCTTGGATAACATCCCCAATTAATAATGATTTCTATTTAATCATT
TAGAGAAAACGAGAGACGGGCATTCACCAAAGTCAATCACTTCAAGAAGC
AGCACAGATCATAGATGAAATCGCTCACACATTCAGTCTAGGGACGATCA
GATTCATGGCTTATTCATTGATTAAGATTATCAAGAAATTATTCCAAAGA
GTCTTGGTCAACAAAGAGGGAATAAAGCAAGTAAGAATCTATTCGTCCAT
TCATCTATTCGTTTATATATTCGTCCATTTATCCANTAAAGCAAGTAAGA
ATCGCATTCTTCATCCGTCCATTCGTCCATTCATCTATTCGTTTATCTAT
TCGTCCATTCATCCATTTAtccattcgtttatctatttgTCTATTCATCC
ATTCGTTTATCCATTCGCCTATTCATCAATTCGTTTATCCATTCGTCCAT
TCATCCATTCGTTTATCCATTCGTCTATTCGTTCATTCGTTTATCCATTC
GTTCATCCATTCATCCATCCGTCCATCCATTCATTTGACCCTTCATGAAG
CTTTCCTACTTATTTGAAGATTCTGATTTGCAGATTCTGATTTGCAGATC
GAAATCTCAGATTCATTAACTTGTTctccatttttcttttacaaTAGTTC
AATGAATGCGCAAAGATGACACCCATTGTCTTAGTTCCAACACATAGCAG
CTACTTTGATTTCTTGCTTGCGTCAGCCATTTGTTTTGCACTCGACCTAC
CTTTACCAGCAATTGTGGCCGGACAAGGTACGTCAATTTCTGATTTATCA
AATGTTGGACTTATTATTAACCTTTCagtaaaaagaattttcaaatactT
AAAACAATCATCCCCTCAAAATTGTTTTCCCCATGAGCTATTAgaattac
tgtaatttttttctatcataagtattttgaaaatatttttgccaaaatct
tATAGTTAAACTAAATGAAATGTCTCATACATCTATATACAGTCTGAATC
CATTGAATTCTTTTCCCTTTTTCCACCCTTTGTGTTTATTTCCACTCTGA
AAATCAATGTTGCATGTTTTGAACTCAAAACTTTTACCAACAAGAAATTG
TAGGTAGGTTGATTAGATGTTTACATTTCTTTAGTCATAGAGATTATCAG
TGTTGTGTTTTTCTTAACgattcaattttgaaaatatgagtACAATCAGA
AGGTCTCAGTACAAATGGTGCCCggagggtactagggttgcgagctgatg
ggggcggggtgccgcccgactttcgaactttggacccttaccgggactta
AACGGAGAAAACAAAGgtaaattttgggaattttacgacccttaccggga
caaatttgaccaattttgacaaaatttcgatctttcaggggataaaaatt
ttcccatttttcctACCcatagtgggactgaaatttgattttctggtttt
tccgacccttagcgggactttggaagtccaaaaaaggtacccttaagggc
ggcacataccgtaccctcaatttgcctaagtaccccccccctctGGGAAA
TGGTGGCGGAAAACATCCTTCACTGTGCCCGATGGTGTGCGAAgtatctc
tcgaaacgtagccataCGTAAATCTCCTAATCCAAGCCATGATAAACTTC
TGATGCGAATATCACTGGGTCGACAAACTCAAACCGGTTTAGAGATTAAA
CAATctacacgttttattttttattagaacccagtttataagaacattga
ggctaaaatttgtcgaaaaattaagaacatcgtaagaacatgcacAGCCT
CAGTttgggaaaaaaatgacaagaaactacaattttttcttcttttcaag
tagttttaaccgaacttagggatggattttctaaaatcgagagtcaaata
ttgtccaaatNacccagcctcagtttggaaaaaaaatgacaagaaactac
aattttttcctcttttcaagcagttttaaccgaacttagggatggatttt
ctaaaatcgagagtcaaatattgtccaaatttaaCCAATTTTaggtgctc
tttattttgcatgatattgtcgatttagagtagtctgaaaaatcaagaat
acatttaagaacattttaggctgaaaactgccaaaaaaataagcacatcc
aagATCAGCCaaatttaggtgttctaataaaaaaaaaacgtgtattccct
tctttttccagattttttgaACATAGCAGTTGTTAACCATTTGCTTCGTG
GTTCGGGAGCTTTCTATATGAGACGATCGTTTGCGTCGGATACGTTTTAC
AGAAGCATCTTCACTGAATATGTTCAACAAATACTGTGTATTGGTGAGCG
ACCTGTTGAATTCTTTCCTGAAGGAACGAGGAGTCGAAGTGGAAAAGCTC
TCCAACCGAAACTTGGTAAGTTACGATTCATGACGTAACGGtttaattct
tgatatgcgcgagtaaaaagattacatcatttttCATATCNTGGTTTAAT
TCTTGATAGGCGTAAGTAAAAAGAGTACATCATTTTCATATCGGAGACAA
CCGAGAGAACCGTAATCTGACCCGTGTGTTGCTATTTTTAGTGACACTCA
AGGCTCAAATTCCGgtgttttcgggtgtttccgacaAGGAAAATGACTTA
ATCTTGACTGACGCATATGACGGAAGCATAAAAAATAACCCTGGCGTCTG
CTTACTAGTTTTGCATACactctttttattttataagaacaacgaggctc
aaaatcgccgaaaataagaacagtttgaCAATAGTGCTGAGCCTGGAATT
GCTCCTAGCTCCAAGCAATTTAGGGATCACAGTAGTAAAAATTTCCCTAC
AAATAAGGGAAGATATGAACAGTTTGAGGCTTGtggtgccaaaaaaataa
gatggGTGGAGCCTCATCAAAAATatactgattcttataaaaacaatagt
ATTGTTCAGATTCAAAATAAGTGACAAACACCAAGTCGTTTTTGGGCGCT
TCCgtttaaaacattacgtcatgaatatcactaATTGAGCGGTcaagatt
attttatttttatgcaTCCTTTTGTGGTGGAAGTTTCAAGTTGTTCAATC
TTTATAGTATAGCAAGTTTGCGAACGCACTCGATGACTCCTCTTCCGAAT
CTTTGCGGGACCAAAGATCTCGTACTTAGTACCGGGTGTGTCAAAAAAAC
GGTAAGCTTTTATAATAGGCTCAGTGTcatatttgcaaaattttatgagc
ataagtagaaaaagctacgtcaaaatttcaattttaggcccgtttttttt
ttacacacCCGGTAcaacaattttgtttttaaataagagtgatattgttt
gcttactcatcaattttgatttacgCAAGCTTTTTGCTATTgcattgaca
cgaatgtggagcaagattgatcagaaagaggaaaagaaaaacaattattt
tgcttatatatgtaaaaacaaaatctttaatgcCTCTCTGTCTTCTACTT
TTTGTGTCAACTGTTATGCAGAGAAGcagcttttgttttgaaattaatgt
TTAACAAAGTTATTGTTAGGTTCAAGGGGATTTTTGAATGGGTAGCCAAA
TTCTTGAAACATCTTTTCTTCTAAAGTGACaatgaacatatttttgtatt
ttaagtctcgataactcgaacacgcacggggaacgaAAATTTGTTCATGT
TATGGAAATCTCGAGTTATGgaaccttttttattttagtttattaGGCAT
TCTTAACTGAAGGAACCAGGAAACTTGTTCGGGTACAGAGACATTCGcct
aatagaggttcgagttacggagactctactgtataacttttaatttatct
tttctttttttgtaggGCTTTTATCCATGGTACTGGAAAGTTGTTTTCAT
GGCTTCGTGAATGACGTGTCTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033355XLOC_033355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052754-exon-scaffold_22-1491911889:145406..145678TCONS_00052754-exon-scaffold_22-1491911889:145406..145678Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1510915933:145406..145678TCONS_00052754-exon-scaffold_22-1510915933:145406..145678Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1575043694:145406..145678TCONS_00052754-exon-scaffold_22-1575043694:145406..145678Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1491911889:145859..146035TCONS_00052754-exon-scaffold_22-1491911889:145859..146035Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1510915933:145859..146035TCONS_00052754-exon-scaffold_22-1510915933:145859..146035Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1575043694:145859..146035TCONS_00052754-exon-scaffold_22-1575043694:145859..146035Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1491911889:146453..146582TCONS_00052754-exon-scaffold_22-1491911889:146453..146582Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1510915933:146453..146582TCONS_00052754-exon-scaffold_22-1510915933:146453..146582Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1575043694:146453..146582TCONS_00052754-exon-scaffold_22-1575043694:146453..146582Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1491911889:148017..148220TCONS_00052754-exon-scaffold_22-1491911889:148017..148220Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1510915933:148017..148220TCONS_00052754-exon-scaffold_22-1510915933:148017..148220Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1575043694:148017..148220TCONS_00052754-exon-scaffold_22-1575043694:148017..148220Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1491911889:149671..149731TCONS_00052754-exon-scaffold_22-1491911889:149671..149731Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1510915933:149671..149731TCONS_00052754-exon-scaffold_22-1510915933:149671..149731Clytia hemisphaericaexon
TCONS_00052754-exon-scaffold_22-1575043694:149671..149731TCONS_00052754-exon-scaffold_22-1575043694:149671..149731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:145406..149731 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566195	0.152347	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.000146801	0	0	0	0	0	0	1.8994	0.747865	0	0	3.32594	3.63323
Blast
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BLAST of TCONS_00052754 vs. Swiss-Prot (Human)
Match: GNPAT (Dihydroxyacetone phosphate acyltransferase OS=Homo sapiens GN=GNPAT PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.045e-53
Identity = 92/205 (44.88%), Postives = 134/205 (65.37%), Query Frame = 1 
Query:  220 EIKMRVLESHRVKDTIEKRKRETGIHQSQSLQEAAQIIDEIAHTFSLGTIRFMAYSLIKIIKKLFQRVLVNKEGIKQFNECAKMTPIVLVPTHSSYFDFLLASAICFALDLPLPAIVAGQDFLNIAVVNHLLRGSGAFYMRRSFASDTFYRSIFTEYVQQILCIGERPVEFFPEGTRSRSGKALQPKLGLLSMVLESCFHGFVND 834
            +IK  VL S  +   I++  +E+        +E ++I+DE++H   LG IRF A++L K+ K++F +V VN+EGI++     +  P+VL+P+H SY DFL+ S + +  DLP+P I AG DFL + +V  LLR SGAF+MRR+F  +  Y ++F+EYV+ +L  G  PVEFF EGTRSRS K L PK GLL++V+E  F   V D
Sbjct:   70 DIKCSVLNSEEIHYVIKQLSKESLQSVDVLREEVSEILDEMSHKLRLGAIRFCAFTLSKVFKQIFSKVCVNEEGIQKLQRAIQEHPVVLLPSHRSYIDFLMLSFLLYNYDLPVPVIAAGMDFLGMKMVGELLRMSGAFFMRRTFGGNKLYWAVFSEYVKTMLRNGYAPVEFFLEGTRSRSAKTLTPKFGLLNIVMEPFFKREVFD 274
The following BLAST results are available for this feature:
BLAST of TCONS_00052754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GNPAT1.045e-5344.88Dihydroxyacetone phosphate acyltransferase OS=Homo... [more]
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