TCONS_00052766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052766
Unique NameTCONS_00052766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052766 ID=TCONS_00052766|Name=TCONS_00052766|organism=Clytia hemisphaerica|type=transcript|length=1306bp
TACAACAATGAAGATGGGCATGGCTCTTTTCAAGATTCATTCTTCATTGC
TAGTCACGAAGAAGATGCAAAAGTATCATACAATATCTTACAAAAACCTG
AtggaacttttgaaaaaatcaaatcagcAAGAATATTCAAGGTTTTCAGC
AACAAGAATGCGATGTTATGCAGCATATCTTACATGTGTTTTGGATTTAA
TGTCACTGGTTTCAATGAACTGTACCCTCTGTGGGCCTCCACCAGCACTG
ATTATAACGGTTTAGGGTTTACAGTAAAAGAAGTTGGAGAATCTTTGATG
ATCGCTTGCATTCCACTGATCTTCttactcatcatcatcatatcCAAGTT
GTCGCAAAGATTTGGCATGAAAAAGatgTATATGGGAAGCCTGGCTATCC
AATCAGTGCTAGTTGTCATTTTTCCAACAATCAAATATGTTCCGGGTACT
TGGGTACTGTCAATGGAGTCGCAGTTGCTTTCATGAATATTTCAAGcgCT
GTTGCACCATATGCCTACGGGACAATGTATTCGTGTTCGTTGCGTAACAT
CAAAGGAATCACCAAAAACACCGATCCACTGGGATTCTCCTTCGATCCAC
ATTTTCCGTATATCGTTATGTCTGTTGTTTCTCTCGTCGTACTAGCACTT
GTATATTTTGttaaagaaattgaattttccGATGATGACGAGAAAAGTAC
CGACTATGCATCGACGGCAACGTCATCTTCTTCATCGATAACGTCGTCGT
TGGATTCGACGCCGATAAAGAATTCAGCACCACTAGATAACAGTTACGAA
AACTCGCTGAAAACAGAGAAATCTAGACTTATCGTTTGATTGACGACCAT
ATTTTACAGGGAGAGTTGTTCAACCTATCGTGTGCGCTATCAAAATAAAG
TCTCTGAAAAGTCTATCACACATACAAAATTTAAAGATTGTACTCTTACG
TGAAAATCCCTACATTGAGGGTCGACTCAGACTGCAGCTTTGGTAATGGT
TTTTAATGTGATGGCATCACTGATCTTTATAAAGTGACTATTAAGCTAta
catccgccatctttgatcggaattTTTAGGATGGTATCTTAATAGGGGGC
ACTACTAGTGAGTTTTCTCTGTCTCACTAACTCGCCAAGCAATAGCAAAC
ACTGAGTCAGGGTAGCAAGCGATTTCGATTTTTACTTGTGATAAACATTT
AAGTCTAGTCTATAGAGTATATGATTTCGATGCAGACAATATCACATGTA
ATACAATACGCACTAATTATCATTTCCTAATGTACTCCAATTACAATAAA
TACCGG
Run BLAST on NCBI

transcript from alignment at scaffold_22:36773..41202-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052766 ID=TCONS_00052766|Name=TCONS_00052766|organism=Clytia hemisphaerica|type=transcript|length=4430bp|location=Sequence derived from alignment at scaffold_22:36773..41202- (Clytia hemisphaerica)
TACAACAATGAAGATGGGCATGGCTCTTTTCAAGATTCATTCTTCATTGC
TAGTCACGAAGAAGATGCAAAAGTATCATACAATATCTTACAAAAACCTG
ATGGAACTTTTGAAAAAATCAAATCAGCAAGAATATTCAAGGTTTTCAGG
TAAATTAAATGATGGTGAATCTTACAGCCCCGGTGAAAATTTTTCCTTAA
GTGGTGATATCGAAATCCATTCCAAGCTCAAAAGGTGTTGTGAGGATGGT
CTCGGGGATGCTTTATTTAAAGAGTGTCATTTTTGCCATCAAATCTAAAT
TTTCGTTAATGAAATTATTCCAGCAACAAGAATGCGATGTTATGCAGCAT
ATCTTACATGTGTTTTGGATTTAATGTCACTGGTTTCAATGAACTGTACC
CTCTGTGGGCCTCCACCAGCACTGATTATAGTAAGTAGCATTTGGTGTTA
ATTTTATACCGATATTAAAGAATATCATTGAACATATCTCCTACCATTTT
GCTACACAGCATTTTTAAGCAAAAGAAAGATTAACTTTCTCCTCATTAGG
TGCAACGCAAGCACAAATCTTTAGGAATTCTTTGTTTATTCTGATTTGTC
AGCATAGAGGCGTGTCTCCTTTTTATATCATAAAAACGATTATTTTTAAT
ATACTGGATGCAATCGACCATTGCATAAAAAGATGCACAAGGCTAATAAA
AGTGTAAATTTGTGTTTCTTAGCACCTCAAGATATCTTTAAAGGGGAAAA
TTTGTAAAATTTGAGTTAGGGAGAGCTTTCTCTCTTTTGTGAAAATCTTT
ACCCCAGCTCCCTTTGCAGTACTCTGTACCAAAGTGTATCTCATGTTTAT
CGCTTTGTAGTACACTCTGCGCATTGTCTGTTTGATAAAAGATTTCCGTA
CGGAGACCTCTGCAATGAAGTATGATTTATAAATAGCAACACTTCTCTCA
TCGTCTCTCCTCTCTCCTCTCTCATCTCCGCACTCCATCGCAGCGGTCGG
TTTGAAAAGTCTCAAATGAAAAAAGACAATGACAACAGACCCTCTACGGC
AAGGAATTTTGAAATTTGTCGTAGATACTGGGTCTGTGTGCAGACAACCT
TTGCAGTTGACCAGAAAACTTTTTTTCGCCGGGAAAAATCTCGTTATTAT
CTAAAAATCGTGTGTCAATTTCATCAGACTCAATTTTCCTTGTAAATTAT
GGAACACCAGCTGCCAAAAGTGTTCAACAATTGTACCACGTGGCAGCTGT
GGCGTTCCATAGTAAATTACATTGAAAAAATGTTATACTCAACATGACTA
AGTTATTTTCTCTACTTCTTTTTTCAGACGGTTTAGGGTTTACAGTAAAA
GAAGTTGGAGAATCTTTGATGATCGCTTGCATTCCACTGATCTTCTTACT
CATCATCATCATATCCAAGGTGAACACTAGTTTAGTAATAAAATGGACTC
TCCATAACTCGAACACGCACGGAGAATTCAATTCAAATTAAGGAAATTTC
GAGTTATGGAGTAAAGTTTTTAAGAGTATTGTTAACTGAAAGGACTTTAA
AAACTGTTCGAGTTAAGGATTNGTGGAGTCTCCATAACTCGAACACGCAT
GGGGAATGCAATTCGAATTAAGGAAATTTTGAGTTATAGAGTAAAGTTTA
TAAGGCATTGTTGACTGAAGGGACTTTAAAAATTGTTCGAGTTAAGGAAA
TATTCGAGTTATACAGGCTTCAGTTAAAGAGATTCCACTGTATTTTAAAC
GATGAATTATCTTTGACTCATATCAAGAGCCACAAAGACGTGGATAATGA
TTTTTTTTCTAAAAATGATCGAAAATAAGAGTGTGTTCACTTTAAGCTTT
AGTTAATAGTTTATTGCCCTCTTCTTAAGGGTTTGTTGAGCTTTTTGAAG
ATTTATTTATTTACTTTATTTACTATCTTCTATTCGATGGTCAATAATCT
TGATACTTTTCTCACTTTTCCAGTTGTCGCAAAGATTTGGCATGAAAAAG
GTACGGCTTTTAACTGAATATAACTTCAGTAGTTTGTTATCAAACTAAGA
TCGAGGTACCCGCATATGTGTTGGCTGAAAATTACTTAGAAGACTTTATT
CACGAATTAGGGTGAAGTATTTTCAATCCTTTTTCGCCAAAATCATGGTT
TCTGGATATGTGATATAATTTTATGATTTTATTTTTAGATGTATATGGGA
AGCCTGGCTATCCAATCAGTGCTAGTTGTCATTTTTCCAACAATCAAATA
TGTTCCGGGTACTTGGGTACTGTCAATGGAGTCGCAGTTGCTTTCATGAA
TATTTCAAGGTAAGATTTTTGGAAGCGCTTAAACAAATATTTGAAAGACT
GGTGCAAGGAAAAGTAGCTCTATGACTATGATTGTAGGTGAGCGGATACT
TAGTAAATTCAGTAAATTAGCTTGAAAATATCCAAGGATGAAAGCAACTA
AATTATTCTATTCCAGAAAATCGTATATTTCTAGTGTCTTCATCAGGACA
AAGTAAAATCTTTGGGTGATCGCACCATACCACTAGATATCAAAACATGT
ACAATTTGGTGTTTAGAGTTGACACTCTTCAATTGGCCGCACTGCAAATT
TTTTTCCCGACATGGACAGGAGTATCATCGACGGTCGGGATTATCTCATC
TTGACGGTCGGGAGTATCATCGACGGTCGGGAGTATCTCATCTTGACGTT
CGGGAGTATCATCGACGGTCGGGATTATCTCATCTTGACGGTCGGGAGTA
TCATCGACGGTCGGGAGTATCTCATCTTGACGTTCGGGAGTATCATCGAC
GGTCGGGAGTATCTCATCTTGACGGTTGGGAGTATCATCGACGAGCGGGA
GTATCTTAAACTTATCTTAAACCTTGAAATGTCGACCCGACCGGGGTTTG
AACCCAACAAATGAAAGAGTTTCTGATCAGAAACCCAGCGCGCTATCCGT
TGAGCCACACTCGCACAGCACAACACATAATTTGGAAATACTTATAGAAT
GACAAAAAAGACGTAGGTAATGTTATTATGATATGGGTAAAATTGTCCCT
TTTTTACACTGACTGAAATTCGAGACGTTACTAGCAACCCTGCGGGGCCC
AAGGCGCCGAGTATGCACCCGGCACAGTGACAAGCCGTTACTAGCAACCC
TGACCTAAGCAATTCCAAACAACAAAACCAAACAACAAAGATGAGATACT
CCCGACCGTCAATGATACTCCCGTCCGTGTACGGAAAAATAGTTTGCGGC
CGCACTACTATTCAATACGCACCATTGATCAAAAATATTGAAAGTCACCG
TCAACTAACAACTTTCCACGCTCTACAATTCGAATCCAATACCGCTTGAA
AATCAAATTAAACGCGTCAGCAGCTCTTTATTTATTCAAGATTGAGTTAC
CTCTCAATTACCAAAGGGTTTAAATCCCTTTAAGACCTTCAACTGTTTGT
CTATGAATTAGACTAAACTTTGTATATATTCTCCACTGGGAATCAATTGC
TATAGTAATGTTTTAGCAAACGTTTCTCGTGATGTAATTTATGAAAAGGT
CTATTTAGCTTGAGCAGTAATTTTATTCATTTTTATCTTATCTATTTTCT
TCACATTTTATTATTTTCAGCGCTGTTGCACCATATGCCTACGGGACAAT
GTATTCGTGTTCGTTGCGTAACATCAAAGGAATCACCAAAAACACCGATC
CACTGGGATTCTCCTTCGATCCACATTTTCCGTATATCGTTATGTCTGTT
GTTTCTCTCGTCGTACTAGCACTTGTATATTTTGTTAAAGAAATTGAATT
TTCCGATGATGACGAGAAAAGTACCGACTATGCATCGACGGCAACGTCAT
CTTCTTCATCGATAACGTCGTCGTTGGATTCGACGCCGATAAAGAATTCA
GCACCACTAGATAACAGTTACGAAAACTCGCTGAAAACAGAGAAATCTAG
ACTTATCGTTTGATTGACGACCATATTTTACAGGGAGAGTTGTTCAACCT
ATCGTGTGCGCTATCAAAATAAAGTCTCTGAAAAGTCTATCACACATACA
AAATTTAAAGATTGTACTCTTACGTGAAAATCCCTACATTGAGGGTCGAC
TCAGACTGCAGCTTTGGTAATGGTTTTTAATGTGATGGCATCACTGATCT
TTATAAAGTGACTATTAAGCTATACATCCGCCATCTTTGATCGGAATTTT
TAGGATGGTATCTTAATAGGGGGCACTACTAGTGAGTTTTCTCTGTCTCA
CTAACTCGCCAAGCAATAGCAAACACTGAGTCAGGGTAGCAAGCGATTTC
GATTTTTACTTGTGATAAACATTTAAGTCTAGTCTATAGAGTATATGATT
TCGATGCAGACAATATCACATGTAATACAATACGCACTAATTATCATTTC
CTAATGTACTCCAATTACAATAAATACCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033358XLOC_033358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052766-exon-scaffold_22-1575043694:41054..41202TCONS_00052766-exon-scaffold_22-1575043694:41054..41202Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1575043694:40773..40879TCONS_00052766-exon-scaffold_22-1575043694:40773..40879Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1575043694:39784..39875TCONS_00052766-exon-scaffold_22-1575043694:39784..39875Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1575043694:39203..39229TCONS_00052766-exon-scaffold_22-1575043694:39203..39229Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1575043694:38894..39014TCONS_00052766-exon-scaffold_22-1575043694:38894..39014Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1575043694:36773..37582TCONS_00052766-exon-scaffold_22-1575043694:36773..37582Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1510915933:41054..41202TCONS_00052766-exon-scaffold_22-1510915933:41054..41202Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1510915933:40773..40879TCONS_00052766-exon-scaffold_22-1510915933:40773..40879Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1510915933:39784..39875TCONS_00052766-exon-scaffold_22-1510915933:39784..39875Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1510915933:39203..39229TCONS_00052766-exon-scaffold_22-1510915933:39203..39229Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1510915933:38894..39014TCONS_00052766-exon-scaffold_22-1510915933:38894..39014Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1510915933:36773..37582TCONS_00052766-exon-scaffold_22-1510915933:36773..37582Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1491911889:41054..41202TCONS_00052766-exon-scaffold_22-1491911889:41054..41202Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1491911889:40773..40879TCONS_00052766-exon-scaffold_22-1491911889:40773..40879Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1491911889:39784..39875TCONS_00052766-exon-scaffold_22-1491911889:39784..39875Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1491911889:39203..39229TCONS_00052766-exon-scaffold_22-1491911889:39203..39229Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1491911889:38894..39014TCONS_00052766-exon-scaffold_22-1491911889:38894..39014Clytia hemisphaericaexon
TCONS_00052766-exon-scaffold_22-1491911889:36773..37582TCONS_00052766-exon-scaffold_22-1491911889:36773..37582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:36773..41202 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7743	14.8368	16.9298	17.2315	2.75452	3.79992	2.54981	2.04497	1.0335	1.53699	1.0462	0.667302	0.681505	0.0776264	0.0394487	0.0217032	0.339708	2.01543	0.481595	0.203426	1.96379	1.81609	7.76751	6.3296	4.63314	2.60358	6.73589	5.68696	5.6022	7.07644
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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