TCONS_00052773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052773
Unique NameTCONS_00052773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052773 ID=TCONS_00052773|Name=TCONS_00052773|organism=Clytia hemisphaerica|type=transcript|length=833bp
TGAATCCAATGGgcacaaacgtcttttggacgtctagTATACGTTTCTAG
AACGTCCAAAGGTCTTAAAGCCGTCCATTGAATGTCAATAAGACGTTGCG
TGCCCATAAGGTTATTTCTACATTGTGATGATTAAATTGGTTATGGCATA
AGTTGGCTCCACTCTTTCTTAACAAAACACACAATTTCTCATACATGAAC
ATTTTCTTTTAGCATCGAGGAGTCGATCCATGTCCCCTGAAGACAAACAA
ATCATATACGTCGTGTCTGGAACCTTATCGTTAGTCCTGGTCATCATTAT
TGCCGTGGTACTATCAAGCATCTATTATCGACGTCGTCAAGCATTACTTA
ATACTGAAACGGCTGAAGCGTCATCGACGGGACACGACGAAAACAAATCA
AGGAAGATCTCATTACATCAGGTCAATCACCAACGTAAAATCTCAAGACA
AGAGAATACTTTCCACATGCCAGACCCTCGTTTCGAGCCAGTTTTACATC
GAACGACAACCAATGGAATGATTGAGAACAATATGTTGAAAAACAATTTG
TGCAAAAAAGCATCACCATCTATAAACAGGTTTGAGAATAAAACTTTTAT
TGATGATgaagaattttaaaaatagtGATTTGTGAATAGACGTTTTAAga
acattaaaaaattttaaggcCTTCagacgttcttaactttttgagattat
gttcttattttcattatcTTGTGAATATTTCTGTACACATCTTAAGAAAT
CGGTTATGGTTTAATTAAAGTCCTTGTTTTtagaccatcgaagccttacc
cagctgacacacaacgttctttcgaCGTTTATA
Run BLAST on NCBI

transcript from alignment at scaffold_22:95743..97574-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052773 ID=TCONS_00052773|Name=TCONS_00052773|organism=Clytia hemisphaerica|type=transcript|length=1832bp|location=Sequence derived from alignment at scaffold_22:95743..97574- (Clytia hemisphaerica)
TGAATCCAATGGGCACAAACGTCTTTTGGACGTCTAGTATACGTTTCTAG
AACGTCCAAAGGTCTTAAAGCCGTCCATTGAATGTCAATAAGACGTTGCG
TGCCCATAAGGTTATTTCTACATTGTGATGATTAAATTGGTTATGGCATA
AGTTGGCTCCACTCTTTCTTAACAAAACACACAATTTCTCATACATGAAC
ATTTTCTTTTAGCATCGAGGAGTCGATCCATGTCCCCTGAAGGTAATACT
GTTTTTAAATTATTTGAATTCTATTCTAAATTATTGTCCTAAGATAGTGG
GCTTGTTTCCTGTCATACTTAATATTAAGAAAATAGTCATAATACCAGTG
ACATACTACGTACAGTATTTTACCAGCTGGTGTTTGACATCAAAAGTAGG
TCCATCTAACGTCTATAACGTCTAGAGAATGTTATGTACGTTAATGGGCA
ATAGCAGTGCGCGGAGAATTAATAGAATAGGATAGTGTACTTCAAAATAA
AAAATAAATGAAAGCCAAAACCTGGGGGGGGGTACTTAGGCAAGTGAAAA
GTACGGGTATGAGTCACCCTTAGGGGTGCCTTTTTGGGACCTAAAAGTCC
CTGTAAGGGTTGGAGAAACCAGAAAATTAAATTTCAGTCCCACTAAGGTT
CGGAAAAATAGGAAATTTCTACTTTTTGCTACTTGAAAGTTCAAAATTTG
GTCAAATTAGTCTCTACCCCCGGCCACGACTGACCTTACCTAATCCTGCC
CCCTCTCTTACAATGTGCAACCAACATGGGATAAATGAAAATAAACTGAA
AATTCTATTTTACAGACAAACAAATCATATACGTCGTGTCTGGAACCTTA
TCGTTAGTCCTGGTCATCATTATTGCCGTGGTACTATCAAGCATCTATTA
TCGACGTCGTCAAGCATTACTTAATACTGAAACGGCTGAAGCGTCATCGA
CGGGACACGACGAAAACAAATCAAGGAAGATCTCATTACATCAGGTCAAT
CACCAACGTAAAATCTCAAGACAAGAGAGTAAGTTCTCGTTTTTTTGAAT
AATGGGCTTTTCCAGAAATAGTCCGTGCATCCCCTGTTGAGGTTATCGGG
TTAAATATCTACATATCTACAATGGAGCAGATATCCAGGGGTAAAGTGTC
TTTTCAACTAAAAAATACAATATCCAGGGGTCTTTACTAATAAAGTAGGC
TATCTAGGGGGTTTGATACTTCGAAAAATCAATATTCTCAACAGTGGGGG
TAAAAGTTTTTTCTGGAAAAGCCATCGCGGAGAATGCGGTTTGAATTTCT
GTTCGAAATTCGAAAGACGGAGTTGATTTCCCTTTTTTTGTTGAGTTTTC
TTGGCTTTATCCATTAAAGGAGTCTACACAATATAGACACTTCAAGATTT
AGTCTTACTAGCATATTTTAGCCATATTTTTCAGTATATGTCTGTTCTCT
TTAGATACTTTCCACATGCCAGACCCTCGTTTCGAGCCAGTTTTACATCG
AACGACAACCAATGGAATGATTGAGAACAATATGTTGAAAAACAATTTGT
GCAAAAAAGCATCACCATCTATAAACAGGTTTGAGAATAAAACTTTTATT
GATGATGAAGAATTTTAAAAATAGTGATTTGTGAATAGACGTTTTAAGAA
CATTAAAAAATTTTAAGGCCTTCAGACGTTCTTAACTTTTTGAGATTATG
TTCTTATTTTCATTATCTTGTGAATATTTCTGTACACATCTTAAGAAATC
GGTTATGGTTTAATTAAAGTCCTTGTTTTTAGACCATCGAAGCCTTACCC
AGCTGACACACAACGTTCTTTCGACGTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033359XLOC_033359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052773-exon-scaffold_22-1575043694:97333..97574TCONS_00052773-exon-scaffold_22-1575043694:97333..97574Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1575043694:96547..96759TCONS_00052773-exon-scaffold_22-1575043694:96547..96759Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1575043694:95743..96120TCONS_00052773-exon-scaffold_22-1575043694:95743..96120Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1510915933:97333..97574TCONS_00052773-exon-scaffold_22-1510915933:97333..97574Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1510915933:96547..96759TCONS_00052773-exon-scaffold_22-1510915933:96547..96759Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1510915933:95743..96120TCONS_00052773-exon-scaffold_22-1510915933:95743..96120Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1491911889:97333..97574TCONS_00052773-exon-scaffold_22-1491911889:97333..97574Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1491911889:96547..96759TCONS_00052773-exon-scaffold_22-1491911889:96547..96759Clytia hemisphaericaexon
TCONS_00052773-exon-scaffold_22-1491911889:95743..96120TCONS_00052773-exon-scaffold_22-1491911889:95743..96120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:95743..97574 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.8304e-06	0	0	0.000293414	0	0	0	0	1.12842	0	0	0.000108427	0.0552811	1.41651	0	0	0	0	0	0	0	0	1.76631e-05	0.102645	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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