|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052777 ID=TCONS_00052777|Name=TCONS_00052777|organism=Clytia hemisphaerica|type=transcript|length=4508bpRun BLAST on NCBI transcript from alignment at scaffold_22:95743..136319- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052777 ID=TCONS_00052777|Name=TCONS_00052777|organism=Clytia hemisphaerica|type=transcript|length=40577bp|location=Sequence derived from alignment at scaffold_22:95743..136319- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052777 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 530.791 bits (1366), Expect = 3.855e-157 Identity = 381/1086 (35.08%), Postives = 526/1086 (48.43%), Query Frame = 2
Query: 791 TCHPKDGAK--MCKKGWSGHNCLQ--ARCKEGCNVPYATCS---QPFGCDCKPGWRHKDHRKLCDKCIANPSCANGYC----VKGND-CVCDKDWAGVNCDKDKNKCR--KSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTGHCFNLITDYRCSCNLGYTGRNCSENINDCEGIVCLNGGKCEDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADYTCYCPKGYTGKNCDSEINECITPAEPCVKDQSINCTDKIADFECYCVKGYTGKRCEVDINDCKPDPCLYG-DCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNNGTCIDGHLNYTCQCLPGFTGTFCESDIDECKSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDNCESNPCQRGNCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDECSNQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCIQPPCNSSGHCPPLRDV---------------------------CQNNAQCIEQHDNYTCICADGFRGRNCEEDINFCEDNPCLN-GHCQDLPTRFQCECYKGYEGLTCNNVTDKCIQKPCQNAKDCIPGNDTFTCQCKEGFTGVACETNIDNCDLRHVGDIIEGSLTDITSWGLCGRDGTCRDGIDTFSCDCNPGFKGRFCKTDINECETLPSPCNGTGECSPLVGPHYQCKCDPGYTGANCETDINECITPNEKGIRGNEYCCDGANTCRDEINGFSCQCPLGKVGIDCCSNTSWCENKD---------VCSSHGQCSELSNYNSSLPYHCQCDQGWTGQRCNIDVDECEISKPCKTHGECFNTKGNYSCDCFSGYEGRHCQNLIDYCVKKNVTCFNGFNCTKKHSNYECNCPQGSGYGKHCE-DINECEVH-KPCGANEDCFNN------VGSYQCKCKAGWTGAQCNEEHIVDCSETNCVLQHTDECKVVGKEKFECKCFGRWQGPTCEDR-NMSKIDPCGCEEDACIIERSERGIRTTMCQCKANGKG 3865
TCH G +C GW+G +C + C ATC F C+C P R L D CI+NP C V G C C + G C +D ++C +PC++ G+C N L ++C C QGY+G C+++ N C NPC C + I +++C C GY G +C N ++C CL+ G+C D + +C C G+ G C ++D+C PCKNGA C DG YTC C +GYTG +C+ +I+EC +PC +C D +A F C C GYTG CE +IN+C PC +G C+D N Y C C G G NCE +++C + C++GTC+D Y C C PG+TG+ C +IDEC PC N GTC + +NGF+C C G+ C ++ + C SNPC G C + +N Y C C PG++G NC + NEC+ N GTCKD + Y C C GF+G +C+ NI+EC++ PC N GTCID + + C C +TG C + C PC + G C D C++ A C H Y C C G+ GRNCE DI+ C NPC N G C D C+C G+ G C ++C PC+N +C D++TC C GF+G+ CE N +C E S C GTC DGI++F+C C PGF G +C+ D+NEC++ PC G C G Y+C C GYTG NC+ ++ C + C C + C+CP G G+ C + CE +C G C + N +HC+C G+TG C VDEC S PC+ C + G YSC C +GY G +C ID C+ C NG C + Y+C+CP+G+ G HCE ++++C P + CFNN VG Y C C G+ G +C E + +C C + T C V F C+C G CE N K PC + + RG +C+C A +G
Sbjct: 311 TCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCEC-PHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINT-LGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECD--PDPC---HYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDC--ASSPCDSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGACRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEV-VLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDC--------TESS---------CFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDS--QPCLHGGTCQDGCG-SYRCTCPQGYTGPNCQNLVHWC----------DSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNT-----HHCRCQAGYTGSYCEDLVDECSPS-PCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSH--PCQNGGTCLDLPNTYKCSCPRGT-QGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERC-EGDVNECLSNPCDARGTQNC-VQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGF---ICKCPAGFEG 1342 HSP 2 Score: 503.827 bits (1296), Expect = 4.828e-148 Identity = 360/1096 (32.85%), Postives = 526/1096 (47.99%), Query Frame = 2
Query: 821 CKKGWSGHNCLQA------RCKEGCN-VPYATCSQPFGCDCKPGWRHKDHRKLCDKCIANPSC--ANGYC---VKGNDCVCDKDWAGVNCDKDKNKCRKSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTGHCFNLITDYRCSCNLGYTGRNCSENINDCEGI--VCLNGGKCEDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADY---------------------------------------TCYCPKGYTGKNCDSEINECITPAEPCVKDQSINCTDKIADFECYCVKGYTGKRCEVDINDCKPDPCLY-GDCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNNGTCIDGHLNYTCQCLPGFTGTFCESDIDECKSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDNCESNPCQRGNCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDECSNQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCIQPPCNSSGHCPPLRDVCQNNAQCIEQHDNYTCICADGFRGRNCEEDINFCEDNPCLNGHCQDLPTRFQCECYKGYEGLTCNNVTDKCIQKPCQNAKDCIPGNDTFTCQCKEGFTGVACETNID----------------------NCDLRHVGDIIEGSLTDITSWGLCGRDGTCRDGID--TFSCDCNPGFKGRFCKTDINECETLPSPCNGTGECSPLVGPHYQCKCDPGYTGANCETDINECITPNE-------------------KGIRG-----------NEYCCDGANTCRDEINGFSCQCPLGKVGIDCCSNTSWCENKDVCSSHGQCSELSNYNSSLPYHCQCDQGWTGQRCNIDVDECEISKPCKTHGECFNTKGNYSCDCFSGYEGRHCQNLIDYCVKKNVTCFNGFNCTKKHSNYECNCPQGSGYGKHCE----------DINECEVHKPCGANEDCFNNVGSYQCKCKAGWTGAQCNEEHIVDCSETNCVLQHTDECKVVGKEKFECKCFGRWQGPTCEDR 3754
C GWSG +C QA C G +P+ + C C P + R+ ++C P G C V CVC G NC++ C SPCQNGG C G ++C C G++G C+ + C N C G C + + Y C C +TG+ C+E++++C+ + C NGG C + + C C NG+ G C NIDDC C +GA C+D +A + C CP GYTG C +++EC A PC + + C + + FEC C++GYTG RCE+D+N+C +PC C D + +++CIC PG+ G +CE +EC + +NG C+D + C+C GFTG C+ D+DEC S PC N C++ N ++C C G+ G CE D D C+ +PC G+C + + + C C PGYTG +C+T+INEC + GTC+D N+Y C C G G +CE N+D+C++ PC+ +GTC+D I+ + C C PG+TG +CN EC P C N C + + +TC C +G+ C ++N C NPC++G C+D ++C+C G+ G C+ ++C PC N C + C C+EGF+G C+TNI+ NC L + G E L C G CR D +FSC C G++G+ C+ DINEC + SPC C G Y+C C GY+G NCETDI++C PN G RG ++ C +GAN C D ++ ++C CP G GI C +NT C + C + G C + N + C C G+TG C DV+EC+ S+PC G C + G+Y C C GY G +CQNL+ +C + C NG C + H+ Y C CP G G +C+ +V + C C + ++ C+C+AG+TG+ C E+ + +CS + C T + G + CKC + G C +
Sbjct: 129 CPPGWSGKSCQQADPCASNPCANGGQCLPFEAS---YICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPC--EHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCL-HNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPCD-SGTCLDKIDGYECACEPGYTGSMCNINIDECAGNP--------------CHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPCVHGACRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCAP-SPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINEC--VLSPCRHGASCQNTHG-GYRCHCQAGYSGRNCETDIDDC-RPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGAN-CTDCVDSYTCTCPAGFSGIHCENNTPDC-TESSCFNGGTCVDGINS-----FTCLCPPGFTGSYCQHDVNECD-SQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWC--DSSPCKNGGKCWQTHTQYRCECPSG-WTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYC-EDLVDECSPSPCQNGATCTDYLGG---YSCKCVAGYHGVNCSEE 1183 HSP 3 Score: 467.233 bits (1201), Expect = 1.097e-135 Identity = 340/1006 (33.80%), Postives = 465/1006 (46.22%), Query Frame = 2
Query: 1019 CVCDKDWAGVNC-DKDKNKCRKSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTGHCF----------------------------------------NLITDYRCSCNLGYTGRNCSENINDCEGIVCLNGGKCEDLV-ANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADYTCYCPKGYTGKNCDSEINECITPAEPCVKDQSINCTDKIADFECYCVKGYTGKRCEVDINDCKPDPCLYG-DCKDMVNDYK---------------------------------------CICQPGFNGTNCENPINECLIQKNICNN-GTCIDGHLNYTCQCLPGFTGTFCESDIDECKSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDNCESNPC-QRGNCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDECSNQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCIQPPCNSSGHCPPLRDVCQNNAQCIEQHDNYTCICADGFRGRNCEEDINFCEDNPCLNGHCQDLPTRFQCECYKGYEGLTCNNVTDKCIQKPCQNAKDCIPGNDTFTCQCKEGFTGVACETNIDNCDLRHVGDIIEGSLTDITSWGLCGRDGTCRDGIDTFSCDCNPGFKGRFCKTDINECETLPSPCNGTGECSPLVGPHYQCKCDPGYTGANCETDINECITPNEKGIRGNEYCCDGANTCRDEINGFSCQCPLGKVGIDCCSNTSWCENKDVCSSHGQCSELSNYNSSLPYHCQCDQGWTGQRCNIDVDECEISKPCKTHGECFNTKGNYSCDCFSGYEGRHCQNLIDYCVKKNVTCFNGFNCTKKHSNYECNCPQGSGYGKHC-EDINECEVHKPCGANEDCFNNVGSYQCKCKAGWTGAQCNEEHIVDCSETNCVLQHTDECKVVGKEKFECKCFGRWQGPTCE-DRNMSKIDPC 3778
C C ++G C N C +PC+NGG C L YKC C G+SG CQ + + C NPC G C N + YRC C +TG NC C C NGG C H+C C G+ G C NIDDC + CKNG C DG+ Y C CP +TG+ C +++EC C + C + + C CV G+TG+ C +I+DC C +G C D V + C C G+ G C ++EC + N C + G CI+ ++ CQCL G+TG CE D++EC S PC N+ TC++Q+ F C C G+EG CE +TD C S+PC G C + IN++ C CP G+TG C+ D++EC N C DG N+Y C C G+ GTHCE +IDEC PC + G+C DG+ F+C C PG+TG C EC QP C++ C ++ + Y C C G G NCE +++ C +PC +G C D ++C C GY G CN D+C PC N C G + FTC+C EG+ C + ++ C+ G CRD ++ + CDC+PG+ G C + NECE+ +PC G C + Y C C G++G NC+T+INEC + C TC D++ G+ C C L G C + C C + G+C + +Y S + C C GW GQ C +D++EC +S PC+ C NT G Y C C +GY GR+C+ ID C + C NG +CT + C+C G G C EDINEC PC +C + V SY C C AG++G C E + DC+E++C T V G F C C + G C+ D N PC
Sbjct: 87 CSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQ-QADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGT--CHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPC-HYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQP--------------CRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPCDSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNECNSNPC------------------VHGACRDSLNGYKCDCDPGWSGTNCDINNNECES--NPCVNGGTCKDMTS-GYVCTCREGFSGPNCQTNINECASNP----------CLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCA-PSPCRNGGECRQSEDYES---FSCVCPTGWQGQTCEVDINECVLS-PCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDDC--RPNPCHNGGSCTDGINTAFCDCLPGF-RGTFCEEDINEC-ASDPCRNGANCTDCVDSYTCTCPAGFSGIHC-ENNTPDCTESSCFNGGT---CVDGINSFTCLCPPGFTGSYCQHDVNECDSQPC 1030 HSP 4 Score: 381.333 bits (978), Expect = 9.433e-108 Identity = 277/821 (33.74%), Postives = 393/821 (47.87%), Query Frame = 2
Query: 803 KDGAK----MCKKGWSGHNC-------LQARCKEGCNVPYATCSQ---PFGCDCKPGWRHKDHRKLCDKCIANPSCANGYC---VKGNDCVCDKDWAGVNCDKDKNKCRKSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTGHCFNLITDYRCSCNLGYTGRNCSENINDCEGIVCLNGGKCEDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADYTCYCPKGYTGKNCDSEINECITPAEPCVKDQSINCTDKIADFECYCVKGYTGKRCEVDINDCKPDPCLYG-DCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNNG-TCIDGHLNYTCQCLPGFTGTFCESDIDECKSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDNCESNPC-QRGNCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDECSNQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCIQPP---------CNSSG--------------------HCPPLRD-----VCQNNAQCIEQHDNYTCICADGFRGRNCEEDINFCEDNPCLNG-HCQDLPTRFQCECYKGYEGL-------TCNNVTDKCIQKP-CQNAKDCIPGNDTFTCQCKEGFTGVACETNIDNC-----DLR-------------------HVGDIIEGSLTDITSWGLCGRDGTCRDGIDT---FSCDCNPGFKGRFCKTDINECETLPSPCNGTGECSPLVGPHY-QCKCDPGYTGANCE 2992
KDG +C+ G++GH+C C+ G TC + C C G + D C ++P C +G C + G +C C+ + G C+ + ++C +PC NGG C DG++ + C C +GY C E N C NPC G C + + Y+C C+ G++G NC N N+CE C+NGG C+D+ + + C C G+ GP C +NI++C +PC N C D +A Y C C YTG C+ + C PC ++ F C C G+ G+ CEVDIN+C PC +G C++ Y+C CQ G++G NCE I++C + N C+NG +C DG C CLPGF GTFCE DI+EC S PC N C + V+ ++C C GF G CE +T +C + C G C + IN + C CPPG+TG C+ D+NECD + GTC+DG SY+C C G+ G +C++ + C + PC+N G C + CEC GWTG C+ ++ C + C G +C L D CQN A C + Y+C C G+ G NC E+I+ C +PC NG C DLP ++C C +G +G+ CN D + P C N C+ ++C C GF G CE +++ C D R H G E S+ + C GTC +T F C C GF+G C+ D C +L C G C + GP C C +TG C+
Sbjct: 581 KDGVATFTCLCRPGYTGHHCETNINECSSQPCRHG-----GTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSP-CDSGTCLDKIDGYECACEPGYTGSMCNINIDECAGNPCHNGGTC-EDGINGFTCRCPEGYHDPTCLSEVNECNSNPC-VHGACRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCA--PSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDDC--RPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCE-SVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTCGSL--RCLNGGTC--ISGPRSPTCLCLGPFTGPECQ 1384 HSP 5 Score: 377.867 bits (969), Expect = 1.223e-106 Identity = 318/988 (32.19%), Postives = 429/988 (43.42%), Query Frame = 2
Query: 1310 GIVCLNGGKCEDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCN----DGIADYTCYCPKGYTGKNCDSEI-NECIT-------------------------------PAEPCVKDQSIN---CTDKIADFECYCVKGYTGKRCEVDINDC--KPDPCLY-GDCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNN-GTC-IDGHLNYTCQCLPGFTGTFCESDIDECKSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDNCESNP--CQR-GNCTNLINDYLCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCD---------------------------------------CYPGFNGTHCEHNIDECS--NQPCENNGTCIDGINDFSCECAPGWTGRLCNYETIECCIQPPCNSSGHCPPLRDVCQNNAQCIEQHDNYTCICADGFRGRNCEEDINFCEDNPCL-NGHCQDLPTRFQCECYKGYEGLTCNNVTDKCIQKPCQNAKDCIPGNDTFTCQCKEGFTGVACETNIDNCDLRHVGDIIEGSLTDITSWGLCGRDGTCRDGIDTFSCDCNPGFKGRFCKTDINECETLP------------------------------------SPCNGTGECSPLVGPHYQCKCDPGYTGANCETDINECITPNEKGIRGNEYCCDGANTCRDEINGFSCQCPLGKVGIDCCSNTSWCENKDVCSSHGQCSELSNYNSSLPYHCQCDQGWTGQRCNIDVDECEISKPCKTHGECFNTKGNYSCDCFSGYEGRHCQNLIDYCVK------------------------------------KNVTCFNGFNC--TKKHSNYECNCPQGSGYGKHCE-DINECEVHKPCGANEDCFNNVGSYQCKCKAGWTGAQCNEEHIVDCSETNCVLQHTDECKVVGKEKFECKCFGRWQGPTC-EDRNMSKIDPC 3778
G CLNGGKCE C C + GP+C + + C PCKN C+ G+ADY C C G++G C + + N C+T A+PC + N C A + C+C + G C D+N+C KP C + G C + V Y+C+C+ G NCE P C + C N GTC G + + C CLPGFTG CE +ID+C C N G CV+ VN ++C C + G C D D C+ P CQ G C N Y C C G+TG++C +I++C + TC D + S+ C+ C G+ G C ++DECS PCE+ G CI+ + F C+C G+TG C + EC P CQN+A C++Q + CIC G+ G +CE + + C +PCL NG C D FQCEC G+ G C D+C PC+N C+ G +T+TC C EG+TG CE +ID CD D + G+C+DG+ TF+C C PG+ G C+T+INEC + P SPC+ +G C + Y+C C+PGYTG+ C +I+EC GN C TC D INGF+C+CP G C S + C N + C HG C + N Y C CD GW+G C+I+ +ECE S PC G C + Y C C G+ G +CQ I+ C C NG C ++ + ++ C CP G G+ CE DINEC V PC C N G Y+C C+AG++G C E I DC C H G C C ++G C ED N DPC
Sbjct: 28 GETCLNGGKCEAANGTEACVCGGAFVGPRC-QDPNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPC--SPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNP--------------CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECD------------PDPCHY------GSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPCD-SGTCLDKID-GYECACEPGYTGSMCNINIDECA--------GNP--CHNGGTCEDGINGFTCRCPEGYHDPTCLSEVNEC-NSNPC-VHGACRDSLNG-----YKCDCDPGWSGTNCDINNNECE-SNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTG-WQGQTCEVDINEC-VLSPCRHGASCQNTHGGYRCHCQAGYSGRNC-ETDIDDCRPNPC---HNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPC 954 HSP 6 Score: 256.914 bits (655), Expect = 9.751e-69 Identity = 191/578 (33.04%), Postives = 254/578 (43.94%), Query Frame = 2
Query: 818 MCKKGWSGHNC-------LQARCKEGCNVPYATCSQPFG---CDCKPGWRHKDHRKLCDKCIANPSCANGYCVKGND---CVCDKDWAGVNCDKDKNKCRKSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTGHCFNLITDYRCSCNLGYTGRNCSENINDCEGIVCLNGGKCEDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADYTCYCPKGYTGKNCDSEINECITPAEPCVKDQSINC------TDKIADFECYCVKGYTGKRCEVDINDCKPDPCLYG-DCKDMVNDYKCICQPGFNGTNCENPINECLIQKNICNNGTCIDGHLNYTCQCLPGFTGTFCESDIDEC--------KSLPCSNNGTCVNQVNGFSCDCAVGFEGDQCETDTDNCESNPC-QRG--NCTNLINDY-----------------------------------------LCTCPPGYTGKNCKTDINECDPVDICNNGTCKDGINSYQCDCYPGFNGTHCEHNIDE--CSNQPCENNGTCIDGIND--FSCECAPGWTGRLCN 2323
+C GW G C + + C+ G A+C G C C+ G+ ++ D C NP G C G + C C + G C++D N+C PC+NG CT D +D Y C C G+SG C+ C + C G C + I + C C G+TG C ++N+C+ CL+GG C+D +++C C GY GP C + + CD PCKNG C Y C CP G+TG CD C A+ D + C D C C GYTG CE +++C P PC G C D + Y C C G++G NC I+ECL N GTC+D Y C C G G CE ++D+C +S C NNGTCV+QV G+SC C GF G++CE D + C SNPC RG NC +ND+ +C CP G+ G C+ D C + N GTC G S C C F G C+ PC N GTC + C C + G LC+
Sbjct: 856 VCPTGWQGQTCEVDINECVLSPCRHG-----ASCQNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINTAFCDCLPGFRGTFCEEDINECASDPCRNGANCT-DCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHP-CQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCISGPRSPTCLCLGPFTGPECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNGLLCH 1426 HSP 7 Score: 103.605 bits (257), Expect = 7.871e-22 Identity = 85/296 (28.72%), Postives = 123/296 (41.55%), Query Frame = 2
Query: 821 CKKGWSGHNC--LQARCKEGCNVPYATCSQPFG---CDCKPGWRHKDHRKLCDKCIANPSCANGYCVKGND---CVCDKDWAGVNCDKDKNKC--------RKSPCQNGGRCTNDGLDRYKCHCKQGYSGNECQLENNACKFNPCGKTG--HCFNLITDYRCSCNLGYTGRNCSENINDCEGIVCLNGGKC---EDLVANHKCNCTNGYEGPKCGSNIDDCDPDPCKNGANCNDGIADYTCYCPKGYTGKNCDSEINECITPAEPCVKDQSINCTDKIADFECYCVKGYTGKRCEV 1645
C+ G++G C L C ATC+ G C C G+ + + D+C+++P G C+ + C C + GV+C+ + + C R C N G C D + Y C C G+ G C+ + N C NPC G +C + D+ C C G+TGR C IN C+G C NGG C + C C G+EG C ++ C C NG C G TC C +TG C + PC + T + + C C + G C +
Sbjct: 1133 CQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCV-DQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCISGPRSPTCLCLGPFTGPECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNGLLCHI 1427 The following BLAST results are available for this feature:
BLAST of TCONS_00052777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.