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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052791 ID=TCONS_00052791|Name=TCONS_00052791|organism=Clytia hemisphaerica|type=transcript|length=1169bp
tcaaaacaaaacagttcaaaacaaaacaaaccaaacaaaaaGAATAATGG
CGATTTTAATTGGTTATCGAGAAGAAATTAAAGTTCTTCGTTATGTCTGT
TGCTTTCAACGGATCTGATGGTCATAAACTTCCAAGTTTAAATGATTTAT
ATGAAGATAGCGTGATAAGAAAAGAGGATCCGTGCAATTTATTGGATAAA
AAAGCCCGCTATCCTTGTGAGCCCACCCCGCTCCGTGTAAGCGCTTGCTT
AATGAGATCAATGACAAAACAAAACGATACACCTCCCCCAAAGTCATACA
GGACCCTTTCAAGTCGTCGACGAAACACGCAGCGACGCAATAACACCAGT
GTCGTTGTTACAGGGCGCCATTCGAAGGAAAATTCAACCACTTCAGTTAA
AGCACCGGGTAAAGTTGAACCACATGTTTTAAAACAGGACCATTCGCAAA
TTCTtgatgaaataaataaactctTTCAAAATAATTCAGCTCAAAAGAAC
GTCAGCGTTTTGAAACAGTTGTTATTACGTAGCGCTTCTGAGCAACAGAC
GACTGCTTATAATCAGGCGAATCAAAAGAGACTGCCAAGCGTgattaaag
aagaaaataagaatgTTGGAATAGGTAATGACGAGGTTAAGAAAACTGAA
AGTTTACNCGCCAAGCGTgattaaagaagaaaataagaatgTTGGAATAG
GTAATGACGAGGTTAAGAAAACTGAAAGTTTACGAGAAACAGTATGGAAG
AACTCTAAAGATCAAGAAAGTGACGAGTTGATAGAAACAGAGGAAGAATC
GGTTGAAATGAAAGTCGTTAGCGAGGAAGAGGTCAAAAATCAAATCGAAa
cacctgaaaatgaaaatcaagatgAATTATCAGAGGAAAATTCCCGAATG
CaagattgaaaaaatttctgtcAGCATAAAACTTATTGTTTTCATGTGCT
TTATTATCGTACTTTGTTGATTTGAACCCTTGGTCTTCCTTttatacatt
aaaggaagaaattttggcggatggccaaaaaagttttttcagaaggaatt
taatttggcggacgaaggacatttttgtccaaaaatcgccattaaaaaag
gaaaaatctgttttaaagcctgaaatagcacacatttgggggaataaata
gagcaacttaaatttggcg Run BLAST on NCBI transcript from alignment at scaffold_220:51543..60704+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052791 ID=TCONS_00052791|Name=TCONS_00052791|organism=Clytia hemisphaerica|type=transcript|length=9162bp|location=Sequence derived from alignment at scaffold_220:51543..60704+ (Clytia hemisphaerica)
tcaaaacaaaacagttcaaaacaaaacaaaccaaacaaaaaGAATAATGG
CGATTTTGTAAGTGCAGTCTGCGTGGTTTTATTTTTCTGTATACATTTGA
AACGTTACCAAAACATAAGATAAGAACAAAGTGATTGTCGGATTTCGACC
TTTGAAGAATGATGAATAAATCATTTGATCGTAAACGCGCAAGAAAAACA
AAGCAAGGTAAACATTGGAGAGTCATTTTggtttgtttagattttttgct
caaactTTTGGTctcatattttattttctcagatTTAACTGATCAAGTTG
ATACCCGTGGAGGAGGGTATTGGTGTTGCAAGCTGACGGggtgtgccgcc
cgactttcgacccttatGGACCCTtagcaaaggaaaattttgtgaatttt
actaCCCTTATCCACCTTTATTGGGActatttgaccaaattttgatcttt
ctcTGGGAGCAAAAAGTTGATATTCTCTTACTTTTCTGACCCTtcgtggg
actgaagtttgattttcggatttttcttatttttacagCCAGACTCTCCC
ACTCGTCTAAAATCTTGAGTATGGATTGATAATCggttattttttttcat
caatgGCTACCGATTGTGATCAATCTATCATTTTAGAGTCAATCGATGAC
TAATTAATCAATCGATCGAGTCTTCCATAAAATCCTGATTATCGATTCAT
TTTCGATTATTGGAATCAATCAATATTCAATCAATCGATTGGTTATCGAT
TAGCCGATTAGTCATCGATTGGAAAAAGTTATCAATTGTATTGAGTCGGA
GAGTCTGGTTACAGGGACTGCCAGGTTCCAAAAAaagcacccttaagggc
ggcataTACCCGTACCCTCAATTtgtctaagtaccccccccccccccccg
gtccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGactgtagtgcagtggtaga
gcatccagccACGGttcacaaggttgtgggttcaacatCCGGGCTACGGT
TCACAAAGTTGTAGATttaacccccagccgggtcataccaaagattctta
aaatggtacttgatgcctctctgcttgatgctcagcaataagagtaggat
caagggtaagtggagcaatccagggagaaagagtggcgccttcccctacc
tttgggtagatagctatcgaaagaggagccttcgggtcgcctccgactgc
ggttgcagacttacttacttccTAGGTTAAAAGCGTTGCCTAATAAAAGG
CTTGTCGGGGACTATCAAAAAGTCCCCACCGGTCATTGAGAGGGCGTGCG
TTACCCTTGCTGGCCGGCGGGATTGTTCTGCTGAGGTTCAAAAAATCGAC
CCTACATGAGAatcgttttttgaaaaaatttggccaaaagttgagaaaaa
aagaactcGGGAATTCCAGACTACGGTGTGATGGAAATATGAGAAAATAT
TACCGAATGGTAGAATTGGGTCTCCTGCTGTACCACAACCCCTTACGTCA
AACGTAACATTAAGGGTCCCTGTTACACGAatattaagagccattttttt
aagagtcttcagggtgtgatacctcatcctcttggattttgatgaaattt
tgaccaaatgatccatcactcaagaaaataagaccctgaaaatttcacct
tgatatctcaagtagttttgaagatacagcgtctcaaagataggctacta
agcgaaaattgaaccctaaaaatcatgaactctggtggggagcagatttt
gaaagccaatgaatttttattcaagtacattagaaagctgatttacagtg
gatttcaagaaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNttggcaaaaacgtgaaaactaattttcgtcaaaaacg
gTTTTTTCAGTCTAAAATCACGATTCTTGAGTATTTTGGGATGAAAACTT
CCAATAAGTTGCTAATTATCATTTCAAAtctattgaaattttttcctcgA
GCAATACTGGATTATTCCAACCCTTACAGAGTCAATAAGTATTTGAAATT
CCATTTAACTTGGACTATATGGAAGCAAAATTATTTAACCATATTGATTA
TCGAACAAAGAAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGA
ACTCATAATACATATCAAGATAAAGTTAACGAATTTTAACAATGAATACT
AATGAAATAATCTAAAGGAGCTGAGAAGGATTAATATTCCAACAAGAAAT
ATCAGAAAAACCTAACCATTAGTAACCTCTTTGAGCTTCTTTGGACTATT
CCCAGTTTGAAAAGCTTAGAAACATAATAAGTATCAAGAGCTCGATTAAT
GGTAGAAGTAAGATTTTTCTAGAGTTCAGAAGGATGAAATATTTCCGTTT
TTGAAGGGTTACCTTGTTCTAATAATGCAAAGTCTACCAGTCACCCAAGC
ATATGTAACATTTCGAATTCCAACATTTCtggcatttttcaaaagtttaa
tgGAATAAATAATCTTTGCACTAAACTACAAATACTTTCGATGAAAAGTT
TCTTTGTCATAATTTGAAACAAGTCTGTAAAAAGGAGCACTTTTGAATGA
GATTCAAAGCTCAAATTGAACGTAAAGACGCTTCTGGGTAATTTATTTCG
CATTTTTTAACACCAGAACTAGTTAGGAATATATCAATCTTAGAAGGCTC
TCTATCACAAGTAACGCTTTATCAAGTGATTATCTAACCTTCTCTTCGAA
AGGATTtgatgaaaacattcgaatgtagcAAGTCATTTAGGATGAATCAT
TCCAACCGTGACATACatgattttttgtaattttggaatATCTCATTCTA
GAGAGCTCAAAATGAATTCATATCTTATCTTACCCTACGGATAAAGCAGG
CTACAAAATTTTtaagtccaagtgtcgtgattaactttagactgtccaat
atttcttgtccagaagatttaaaCATCATTGTTTGCAGTATCTCATAAAA
TGTCACCCTAGTAATGTTGCTTAGTTATTTAAGAATCAACAAGTAAGTAT
GGGTAGGGGGTAAAAGTCGGcatcttcagatcttcttcgcctggtgtttt
ttctgttccatataatgatagaagacatcaaaaaaatatttttttaaatt
ttatgcatttttgacgaattccagtccaaaaaactgcccgggggggcttt
tttaccaaaaaatcagctcttttgaggtttattcttcatatctcttccaa
aacttgctcaaattcaagatgtagtgtttttttatgaaaatttaatctat
tgtgatgcattctgcgcaatctttaaggtcagaagtccaaaattggccga
acccccctgggggtactgattcgcactacaggcaaaaattggaaaaaatg
gcattttctggccttttcaggcctgtaaatatgtcaaaactattgcaaat
cttatttttttcacttgctgtactaattttatgaagaaacagcaaaataa
acatattggattgaaaattgtgcccgttggagccctaaacgagctgtttt
aagccgattttgggtagcaaaatgcttcttaaggccaattttgcaagttc
ataaactttaaactaattgattcacacgtctgaaattttcagagatggaa
gtcttgagtaaagtctttaagctaaatgaatttcaagattttcacttttt
tcaaaaaatcataatggcgtcttcaaaaatcgctttttagcaaaaaaaaa
tcagatttatcaaaatatagcattttttaaggcaagcttaacagcaaact
gagtttaaatgctgattgaaattttttttgcagtgatagtactctggaga
tactccagggaaatcaaaatcatttgggtctgggatttgtctatgtcccc
cattatggaaataaaatccctgtaaagagccatttttcaggcaaaaattc
aaatttggactgaaaaattttttaaaatgacaatagacatgggcccgaat
tttcttgcagtgatagtattctggaaatactccaggaaaatcaaagtcat
ctgggcttgggatttgggtatatccaccatNgctaaaaagtgatttttga
agacgccattatgattttttgaaaaaagtgaaaatcttgaaattcatttt
gattaaagactttactgaagacttccatctctgaaaatttcagacgtgtg
aatcaattattttaaagtttatgaacttgtaaaattggccttaaaaagca
ttttactACAGAAATCGGCTTAAAACAGCTTgtttagggctccaacgggc
acaattttcaatccaatatgattattttgttgtttcgtcataaaatttag
tacagcaagtgaaaaaagtaagatttgcaatagttttgacatatttacag
gcctgaaaaggccagaaaatgccattttttccaatttttgcctgtagtgc
gaatcagtacccccaggggggttcggccaattttggacttctgaccttaa
aaattgcgcagaatgcatcacaataggttaaattttcataaaaaaacata
acatcttgaatttgagcaagttttggaagagatatgaagaataaacctca
aaaaagctgattttttggtaaaaaagcccccctgggcagttttttgggct
ggaattcNGGActggaaaatcttaaaaatggcattagacatgaacctaaa
atctttttgcagtgatagtcttctggaaatactccaggaaaatcaaaatt
gttttccCTGTAGTATTTCCaaaagactatcactgcaaaaagattttagg
ttcatgtctattgccatattAGAGCAGTTGTTAAGTCAAAATGGGATTTT
ggcttgaaatgttgcaatttagccagttttagcacagttttcaattccat
aatggcagatatacccaaatcttaaactgaaatgattttgattttgaatt
ccCGGAGTATTTCTAGAAGAccatcactgcaaaaagattttagcttagga
tcatgtctattgccatttttaagattggcaagatttaagatttttgttcg
aaatattgcattttagcaagaatttcaattccaaaatggtggatatatcc
aaatcccaagcccagatgactttgattttcctgcagtatttccagaatac
tatcactgcaagaaaattcgggcccatgtctattgtcattttagagattt
tNtacatcttgaatttgagcaagttttggaagagaCATGAAGCATAAAcc
tcaaaaaagctgattttttggtaaaaaaactgcccgggggcagttttttg
ggctggaattcgtcaaatatgcataaaatttaaaaaaaatttttttaaat
gtcttctatcattatatgggacagaaaaaacaccaggcgaagaagatctg
aagataccccccaaaaaagttactCTACCCCCTACCCCTAAGTAAGGCTG
TTAGTGTACACAAATATAgagatattggacagtctaaagttaatcacgat
acttggacttagaaattttgcggtaaagcgcaaattattgtcaaagtagg
atttctgaatgagtctaaaaagtttttgaataggaattaagtactgttga
acccatttagttgaagtaacctgcttatatttaggaataatattcaccaa
actgAAAGGCtgaggcttttcctgaaaatataggccctggaatggtagga
aaggccagatgtcagtctcatttttttacatattctatctgtacttaaaa
ataaagaaacagtcataaaatgtcatctgttaatggaaatgacctgaatt
tttttacagttgttcccttaatgccaatgattacttggctagagaagatc
aaccaatattttgacaaaaatttacctttagagcccttaagtgggcctga
tttagcattttaggagggaaaaaacaacgaagttaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTCATCCCAAAATACTCAAGAATCGTGATTTTAGACTGAA
AAAAccgtttttgacgaaaattagttttcacgtttttgccaaaagtgtaa
aaaacactgacatatctttaagagacttcaaacccccactgagatttttt
gaggttataaactagacctactaaggaagcattactgaaagtttaaaaaa
aatttgtagggggttcaaaaagatacgccatcttgaattttgctccagat
ctgccaaaatagcaattgtttcggccatttttgacggttacgcaaaaata
gaaatcctgaaaatgttatttttgtggccaaaacccaccagtaaaccact
ccaggtcaaaagtttactTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNcctgaaaatgttatttttgtggccaaaacccaccagtaaacca
ctccaggtcaaaagtttgcttcaaaaaagtctccaagtaccatcagcaga
cagctaaaagtgcttctaAACCCAGATTAAACAAAGTTTGAGGCCCTCTA
CAGGAGATGCtaaagattttcggggaaaattttggagactcaatttgatt
ttttttgattccctacaaaaagttcttgaaatccaatgtaaatctgctcc
ccaccagagttcatgatttttaggggtcaattttcgcttagtagcctatc
tttgtgacgctgtatcttcaaaactacttgagatatcaaggtgaaatttt
cagggtcttattttcttgtgtgatggatcatttggtcaaaatttcatcaa
aatcTAAGAGGGTGAGGTATCAgactttctttattctgaagatttttaaa
aaaaattggtttttaatTACCAGCACAGGGCTCAATTTTGAGCTTAAACT
TCATTGTGCTCATTATTATCTTTGTGGACGAAATCACATCCATGCGGTGA
AAGCATTGCTTGGCTTCCGAGCTATGTGACTAACTAGTTCAACTGGACGT
GTCTTGTACTATTTTTTATTTGCACACATTCACATTGACTTTCTATTTAG
AATTGGTTATCGAGAAGAAATTAAAGTTCTTCGTTATGTCTGTTGCTTTC
AACGGATCTGATGGTCATAAACTTCCAAGTTTAAATGATTTATATGAAGA
TAGCGTGATAAGAAAAGAGGATCCGTGCAATTTATTGGATAAAAAAGCCC
GCTATCCTTGTGAGCCCACCCCGCTCCGTGTAAGCGCTTGCTTAATGAGA
TCAATGACAAAACAAAACGATACACCTCCCCCAAAGTCATACAGGACCCT
TTCAAGTCGTCGACGAAACACGCAGCGACGCAATAACACCAGTGTCGTTG
TTACAGGGCGCCATTCGAAGGAAAATTCAACCACTTCAGTTAAAGCACCG
GGTAAAGTTGAACCACATGTTTTAAAACAGGACCATTCGCAAATTCTtga
tgaaataaataaactctTTCAAAATAATTCAGCTCAAAAGAACGTCAGCG
TTTTGAAACAGTTGTTATTACGTAGCGCTTCTGAGCAACAGACGACTGCT
TATAATCAGGCGAATCAAAAGAGACTGCCAAGCGTgattaaagaagaaaa
taagaatgTTGGAATAGGTAATGACGAGGTTAAGAAAACTGAAAGTTTAC
NCGCCAAGCGTgattaaagaagaaaataagaatgTTGGAATAGGTAATGA
CGAGGTTAAGAAAACTGAAAGTTTACGAGAAACAGTATGGAAGAACTCTA
AAGATCAAGAAAGTGACGAGTTGATAGAAACAGAGGAAGAATCGGTTGAA
ATGAAAGTCGTTAGCGAGGAAGAGGTCAAAAATCAAATCGAAacacctga
aaatgaaaatcaagatgAATTATCAGAGGAAAATTCCCGAATGCaagatt
gaaaaaatttctgtcAGCATAAAACTTATTGTTTTCATGTGCTTTATTAT
CGTACTTTGTTGATTTGAACCCTTGGTCTTCCTTttatacattaaaggaa
gaaattttggcggatggccaaaaaagttttttcagaaggaatttaatttg
gcggacgaaggacatttttgtccaaaaatcgccattaaaaaaggaaaaat
ctgttttaaagcctgaaatagcacacatttgggggaataaatagagcaac
ttaaatttggcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052791-exon-scaffold_220-1491911889:51543..51599 | TCONS_00052791-exon-scaffold_220-1491911889:51543..51599 | Clytia hemisphaerica | exon |
| TCONS_00052791-exon-scaffold_220-1510915933:51543..51599 | TCONS_00052791-exon-scaffold_220-1510915933:51543..51599 | Clytia hemisphaerica | exon |
| TCONS_00052791-exon-scaffold_220-1575043694:51543..51599 | TCONS_00052791-exon-scaffold_220-1575043694:51543..51599 | Clytia hemisphaerica | exon |
| TCONS_00052791-exon-scaffold_220-1491911889:59593..60704 | TCONS_00052791-exon-scaffold_220-1491911889:59593..60704 | Clytia hemisphaerica | exon |
| TCONS_00052791-exon-scaffold_220-1510915933:59593..60704 | TCONS_00052791-exon-scaffold_220-1510915933:59593..60704 | Clytia hemisphaerica | exon |
| TCONS_00052791-exon-scaffold_220-1575043694:59593..60704 | TCONS_00052791-exon-scaffold_220-1575043694:59593..60704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:51543..60704 + |
Blast
The following BLAST results are available for this feature:
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