TCONS_00052800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052800
Unique NameTCONS_00052800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052800 ID=TCONS_00052800|Name=TCONS_00052800|organism=Clytia hemisphaerica|type=transcript|length=509bp
gcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGAT
AACTTGTTTTCAGTGTCAGAAGATTcagttagaaaaaaagaaagaaagga
aaacttcaaaatggtaaaaagcTATCAATCTTGATGAAGAGTTGATTTGG
agagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCG
GCAAGAAACCAAGAAAATATTCTATAGAAGGAAAAGATGAAGACCTGATA
CGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAA
TGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTG
AAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTTACATTTGGCTGCGCGT
CACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGT
AGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGT
ATGGATATG
Run BLAST on NCBI

transcript from alignment at scaffold_220:69053..70867+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052800 ID=TCONS_00052800|Name=TCONS_00052800|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at scaffold_220:69053..70867+ (Clytia hemisphaerica)
gcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGAT
AACTTGTTTTCAGTGTCAGAAGATTcagttagaaaaaaagaaagaaagga
aaacttcaaaatggtaaaaagcTATCAATCTTGATGAAGAGTTGATTTGG
agagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCG
GCAAGAAACCAAGAAAATATTCTATAGAAGGAAAAGATGAAGACCTGATA
CGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAA
TGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTG
AAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctatctttttataagaa
caagaaaatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTAT
AACCCTCAAATTgctcttatcctgttcttattctTTTGACAATATTAAGG
AACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCATT
CATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGA
ATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATC
GCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGAC
TGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGG
AAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGG
TCCTACGTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATC
GAGATAAAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGAT
TTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTAC
CAGTCCGCACCGCTAAGTACTGACAGGCGTataccacagatatcttatat
aaaacactagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCAC
CATCTTTAAtaagtagaccatagttcggtGTTGGCaattttatcgatctt
tcgcctCACCGTTTCGTGCCAAACTGTGACCTACTCTGGCCTACTTTACT
TCCAACAAAGAcggcgcattattttgcttcacctgccgtTGCTTGCGAAA
TACAGAGTAGCTATATTTAGTGTTTTATGTAAGATATCTATGGTGTATAA
AATAACAACATGCAATCCTCAAGTAAATTGAATGAcgacaaaaacaattt
tttcactaaCACTACTGTCTTNAAGAAACCAAGAAAATATTCTATAGAAG
GAAAAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACG
GGCAAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTT
TGATCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAG
ATTctatctttttataagaacaagaaaatttttcttgagGATCGGCTCTT
CTACTTTTTTTTTGCGCTATAACCCTCAAATTGCTCTTATCCTGTCCTTA
TTCTTTTGACAATATTAAGGAACTAAAGGCTTTTAACCAATTTCTACTAC
TTTGACcctcaattttcattcattgcaGTTTGTCTGCGTTACATTTGGCT
GCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGC
GTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAG
CGTTGTATGGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033370XLOC_033370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052800-exon-scaffold_220-1491911889:69053..69363TCONS_00052800-exon-scaffold_220-1491911889:69053..69363Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1510915933:69053..69363TCONS_00052800-exon-scaffold_220-1510915933:69053..69363Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1575043694:69053..69363TCONS_00052800-exon-scaffold_220-1575043694:69053..69363Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1491911889:70484..70544TCONS_00052800-exon-scaffold_220-1491911889:70484..70544Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1510915933:70484..70544TCONS_00052800-exon-scaffold_220-1510915933:70484..70544Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1575043694:70484..70544TCONS_00052800-exon-scaffold_220-1575043694:70484..70544Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1491911889:70731..70867TCONS_00052800-exon-scaffold_220-1491911889:70731..70867Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1510915933:70731..70867TCONS_00052800-exon-scaffold_220-1510915933:70731..70867Clytia hemisphaericaexon
TCONS_00052800-exon-scaffold_220-1575043694:70731..70867TCONS_00052800-exon-scaffold_220-1575043694:70731..70867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:69053..70867 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0977418	0	0	0	0	0.838832	0.97132	0	0	0.0949379	0.0382263	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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