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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052801 ID=TCONS_00052801|Name=TCONS_00052801|organism=Clytia hemisphaerica|type=transcript|length=2984bpRun BLAST on NCBI protein sequence of TCONS_00052801-protein >TCONS_00052801-protein ID=TCONS_00052801-protein|Name=TCONS_00052801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=544bp LGLNNTIQHYNSKQKGSKIKKMTDLTLLQTFGQSFPEEFDGSLDSVSPALRun BLAST on NCBI transcript from alignment at scaffold_220:115057..131642+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052801 ID=TCONS_00052801|Name=TCONS_00052801|organism=Clytia hemisphaerica|type=transcript|length=16586bp|location=Sequence derived from alignment at scaffold_220:115057..131642+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_220:115057..131642+ >TCONS_00052801 ID=TCONS_00052801|Name=TCONS_00052801|organism=Clytia hemisphaerica|type=CDS|length=24525bp|location=Sequence derived from alignment at scaffold_220:115057..131642+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052801 vs. Swiss-Prot (Human)
Match: RBBP5 (Retinoblastoma-binding protein 5 OS=Homo sapiens GN=RBBP5 PE=1 SV=2) HSP 1 Score: 494.582 bits (1272), Expect = 2.662e-163 Identity = 270/461 (58.57%), Postives = 351/461 (76.14%), Query Frame = 3
Query: 72 DLTLLQTFGQSFPEEFDGSLDSVSPALTSAFNRTGSLLAVGCNDGRLVIWDFLTRGVAKVMVAHIHPVSSVSWSHDGKQILTSSTDWSVGLWDVLSGNCETRYRFPSAIHKVQFHPRNSKLFLVCPLKHAPVLVDV-DKKHHILPVGGECEQNIVAAFDKKGEYIFTGNAKGKITVIKTDTLKEVTSFRISTATNANTAIKSIEFSRRGSSFLVNSQXXXXXXXXXXXXXAYKGGKEPEATQKLQDLVNKTLWKKCAFSGDGEFIVAGSSRQHALYIWERTIGSLVKILHGTKGELLVDVVWHPIRSIICSVANGLVSIWSQTHVENWSAFAPDFKXXXXXXXXXXXXXXXXXXXXXXXXXXNTNQDLTEESEIDVESVERPLFYSSGDE--PDDDCLYYLPVAPEIDEPEGEMTHGYDTXXXXXXXXXXXEAGSNKSEES-DSSGPPAKKTKTKDINING 1442
+L LL++FGQ++PEE DG+LD +S ALT FNR G+LLAVGCNDGR+VIWDFLTRG+AK++ AHIHPV S+ WS DG +++++STD V WDVLSG+C+ R+RFPS I KVQ+HPR+ LVCP+K APV++ + D KH +LPV + + N+VA+FD++GEYI+TGNAKGKI V+KTD+ V SFR++T T+ TAIKSIEF+R+GS FL+N+ DR+IRV+D +++ EPE QKLQDLVN+T WKKC FSGDGE+IVAGS+RQHALYIWE++IG+LVKILHGT+GELL+DV WHP+R II S+++G+VSIW+Q VENWSAFAPDFKE+DEN+EYEERESEFD+EDEDK E T D E+ E+DV SV+ + S DE D L YLP+APE+++PE E +G +L + + K + S D S PP KK KT +I + G
Sbjct: 2 NLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAKIISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQNKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKTDSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPEPMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLDVAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKSEPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPE-ENPYGPPPDAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQG 461 The following BLAST results are available for this feature:
BLAST of TCONS_00052801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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