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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052803 ID=TCONS_00052803|Name=TCONS_00052803|organism=Clytia hemisphaerica|type=transcript|length=1966bp
GTCATACTACACAATGGATCTATTGTATTTGGTAAACAATAGATATCAAC
TCTCGAGAAACGACTAAATTTGTCGTTTTAATAAAACATAAATCAGTCTC
TAACACGAGTGTTGCAAAGCGGGCGATAGCTGACGAACATTGAAGTATTT
CTACCGAGTATTGGAACCGAGAATATATCgtttatttgctttttttttga
cttgttGACGAGTTTATATAAAACTAAGCTTCTGAAATGGCATTTCCAGA
TTTTCCACTGACGAATGAAGACAACACAGCAACTGCAGATCAGTACACAC
TCAGCCACCATAAAGATTTGAATAACAACTCAACGGAACACGTATCGGCC
ACCACACAAGAACATATCAGAAACATTTCAAATCTTAACATTTCGAATAA
AAGtatcttggaaaaattcgaagcGATGAACAAATgtattgattattttc
aacaacAGCTGCAAGAACATAAAGGCTCTATCAACGAACTTGAATTTAGC
TTAACCTCGCATAAACGAACTCAAGGACCCAAAGAGGATACTGATGACGA
CTTACATTACGAGTCTGGTTGCGGTTTATTCCCTTTTATCCAAAAATGTC
TGTTAAACGAGACCAAATACTACGATACAATTCGCTGGGTAAACAAGGCC
GAACAAGAATTCAAAATCGTGGACCCTGATAATTTAGCGACACTTTGGGG
CCAAGAAAAACGTAAAGAGGGAATGACAAAGCGTAAACTGACCAGAAGTT
TGGCGTATCTCGTAAACGCGAAAAAGAAGTTACGCCGCTCATCTTCACGC
ACATTCATCTATCAAATTATCAATAAATTTGGCAGAAGTATGTGTCCCTC
ACCTGAATCTAATTGGGAAGAATCGCCAACCACCCTTGAGAAATCTCAAC
CAACGCCCACCATggaacaaatgaaacaaatattACGACAAAATCCTAAA
TATTTACAAGTCTTGATAGAcgttcaaaaacaacaaaaagaatcAATTGG
GAGTAAGAATATCCTAAAAGCTGGTTCCAAACGATCTTCAAATACACAAG
ACCAACAGGTTCCAGAGAAATCAGTCAAATTGAACCAGGAATCTATCTTC
AAGACTCCCCAGCAGCAATCACAAAACAACTTCATTGATACAGCTTCATC
TTTTAACTGGTCCCAATCATATAATAACAATAACTATTCACCATCACCGG
CTAATGACAGTTATGTCAGTTTTAGCCCTCTCTCAACCTCATCAGATGGC
AGCTCAAACTTTAGTCAAGTTTGCGATGGTAACAATAATTTCATGTCAAC
AACTACTTCAAACTTTGTCTCTTTGTCTGACTcatcaaattcaatctttt
ctGGCGATTCACTTTTCAATTCTGGTAACTCTTCATCTACTCTTTTCAAC
AATAATTCCACGTCAAATTTCATGCAGCAAATGTCCACGACAGTATCTAC
GGTGAATTTCACACCAGAAAATTCAACCTCAAGTATTTTTACTACTCCTG
TTAGTGACACCAACAGCTATAGTCAACAAGTCACATCAGtacctacaaac
tttacaaatccAATCGCTCATTCGTTGGTCAGCGATGTTTCCGATATTGG
ATCTATTATTCCGACATTCTGTTTGAATCGGAATTCAGGATTGAATAATG
ACATTTTTGCTTATCTTCAATAATTTTGTAAGAAGAGCTACTTAGGaatc
atattttttataaagttttcttCATGTACATATTCTTTTATAATTTTAGT
GAGAATATAATTTCACTTGAAAAATCAGATAGATGGGAGAAATTTATTAT
TAGACGCTACTATAGATGTAGTTTAGTAAAGTACTACTTCGTAATCCTTC
ATAATCTCAATTTGTATTTAGTTGACAGGTAATCTTTCTCTTATGCCTAT
TAAAagtttgtaaatatttctttaccGTAAAAAAGATTGTACATATATAC
TTTTTGCATAGATTCA Run BLAST on NCBI protein sequence of TCONS_00052803-protein >TCONS_00052803-protein ID=TCONS_00052803-protein|Name=TCONS_00052803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MAFPDFPLTNEDNTATADQYTLSHHKDLNNNSTEHVSATTQEHIRNISNL
NISNKSILEKFEAMNKCIDYFQQQLQEHKGSINELEFSLTSHKRTQGPKE
DTDDDLHYESGCGLFPFIQKCLLNETKYYDTIRWVNKAEQEFKIVDPDNL
ATLWGQEKRKEGMTKRKLTRSLAYLVNAKKKLRRSSSRTFIYQIINKFGR
SMCPSPESNWEESPTTLEKSQPTPTMEQMKQILRQNPKYLQVLIDVQKQQ
KESIGSKNILKAGSKRSSNTQDQQVPEKSVKLNQESIFKTPQQQSQNNFI
DTASSFNWSQSYNNNNYSPSPANDSYVSFSPLSTSSDGSSNFSQVCDGNN
NFMSTTTSNFVSLSDSSNSIFSGDSLFNSGNSSSTLFNNNSTSNFMQQMS
TTVSTVNFTPENSTSSIFTTPVSDTNSYSQQVTSVPTNFTNPIAHSLVSD
VSDIGSIIPTFCLNRNSGLNNDIFAYLQ Run BLAST on NCBI transcript from alignment at scaffold_220:232792..236470+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052803 ID=TCONS_00052803|Name=TCONS_00052803|organism=Clytia hemisphaerica|type=transcript|length=3679bp|location=Sequence derived from alignment at scaffold_220:232792..236470+ (Clytia hemisphaerica)
GTCATACTACACAATGGATCTATTGTATTTGGTAAACAATAGATATCAAC
TCTCGAGAAACGACTAAATTTGTCGTTTTAATAAAACATAAATCAGTCTC
TAACACGAGTGTTGCAAAGCGGGCGATAGCTGACGAACATTGAAGTATTT
CTACCGAGTATTGGAACCGAGAATATATCgtttatttgctttttttttga
cttgttGACGAGTTTATATAAAACTAAGGTAGGCGCTTTATGTGACTTTT
ATGTGTGTTGATGACAGACAAGTTAAAACGTGTATGCGTTTCCTAtcgaa
atatgtcatatttcCTTTTACCCGGAAATTATAATATTTCCTAGTTTCTA
TTCCGGAAATAACTTGCCATTTCTCACGCAATCTCTATCATTACTGAATA
ATATTATGCAAAATGCTACTTTTAAAGGCAGCCAGCATGAAGATGACCTT
AGTACCTGATTTTCATAGCGCTGTTGATCTCCTTATTGCGCCAAATTACT
TTTGGTGCAACACTATAATTTAATTTGCTGCCACCCGGTAACAAAGAAAA
AGTATCCAAAAACCTTTTCGGAatctgatatttttttatttgagattCTT
CACACAACGTTGTCTCGATGTCCatttaacgttcataacgtccataatat
gaacgttgaaacaaagtTATGTGTCTATTAAAGAGTTagcccccttctca
cagacccagtaggatttcttcagccagtgggggtaaaaataacggactga
agcTTGATAGGGATATTCCAATATTCTTTGTGGCTAGGGATTTAAATTCT
AatgttttcaagtcataaaattcagtggggatggaaaaattaGCATTTAG
GATATTTCAGTTAGGATAGGTTTATTTGACAAAACTTGGAGTATAATtat
ccactggggacgatattgtGGTCAATTTTCCCATAGTGGGAAGAGGCTCT
AGTGGGAGAAGGGGGTATAAGAATGCTTGCAGCTGTTTTGTAGATGAACC
TGTGCATCGAAACATCGAAATTCAAATAGAGTGAGCGGATTAATCGATCA
AGAAAATAATGACAGTCATTTATGGTCATTTGATAAATCATTAAGTTAAG
TTACATCATGCAAGtttcatggaaaatattttctatgTGGGTTACGCGAT
GAATAAACCTGCAAAAACAAGCAACACATTACTTTAACACTAACATTTCT
CTCTCGCTACACCTTTTGTTTAAATAGTTTTCTGACTCCCACGAGTATGG
TATCCACTTATCCAGGCCTTTATAAGTCTCTGAAACTGACATCGGCACGA
TACAGAAAAGCAAATATGACTTATCAAAACATATATATTTTCAACTCAAA
GTTCCTAGTTTTCGGGCCCCACTGCGTCTTGTTAATATTTTCCCGCCTCC
ACAATTTTCGTTTCGGTTTCAATGACCTATAGTGGTATATATTAAAATTT
TCCCTATTTCATTATTAGATCTGTGTTTAAAACCTTAAATCCatcatttt
tgatattatttacTTTGACAAAATAAACCTTTCTCAgaataatatttttt
agaaaCGAAAATTTTTCCGCTTTTCATTTTCGAAATATACTTATGACAGT
ATGAATTAAATGATATAAATTCAATTGTTTTTAGCTTCTGAAATGGCATT
TCCAGATTTTCCACTGACGAATGAAGACAACACAGCAACTGCAGATCAGT
ACACACTCAGCCACCATAAAGATTTGAATAACAACTCAACGGAACACGTA
TCGGCCACCACACAAGAACATATCAGAAACATTTCAAATCTTAACATTTC
GAATAAAAGtatcttggaaaaattcgaagcGATGAACAAATgtattgatt
attttcaacaacAGCTGCAAGAACATAAAGGCTCTATCAACGAACTTGAA
TTTAGCTTAACCTCGCATAAACGAACTCAAGGTAAGCCCATGATAAAATT
CTATAATCACATCTTACTGATTCTTACGGCTAGAAGAGGATAGAAGAGCA
GACCTTAATTCAAACAGGGTGGAAAATATCTCTCCTTTACAGTTAAAAAA
TATCTCCAAACTTTATTGACTTCACAGCTTTCAGGAGTAATTTTTCCATA
GGGCTATTACCACGGGGTGTAGCTTTAAAATTGAaactatttgaaatttt
atgtaTGACCTGTAGATTTTTTGGTAAAGAGTTCTTCCGCAATATCAAGG
ATAATCcaaattaatttttctcaaattgtttCATTCAGGACCCAAAGAGG
ATACTGATGACGACTTACATTACGAGTCTGGTTGCGGTTTATTCCCTTTT
ATCCAAAAATGTCTGTTAAACGAGACCAAATACTACGATACAATTCGCTG
GGTAAACAAGGCCGAACAAGAATTCAAAATCGTGGACCCTGATAATTTAG
CGACACTTTGGGGCCAAGAAAAACGTAAAGAGGGAATGACAAAGCGTAAA
CTGACCAGAAGTTTGGCGTATCTCGTAAACGCGAAAAAGAAGTTACGCCG
CTCATCTTCACGCACATTCATCTATCAAATTATCAATAAATTTGGCAGAA
GTATGTGTCCCTCACCTGAATCTAATTGGGAAGAATCGCCAACCACCCTT
GAGAAATCTCAACCAACGCCCACCATggaacaaatgaaacaaatattACG
ACAAAATCCTAAATATTTACAAGTCTTGATAGAcgttcaaaaacaacaaa
aagaatcAATTGGGAGTAAGAATATCCTAAAAGCTGGTTCCAAACGATCT
TCAAATACACAAGACCAACAGGTTCCAGAGAAATCAGTCAAATTGAACCA
GGAATCTATCTTCAAGACTCCCCAGCAGCAATCACAAAACAACTTCATTG
ATACAGCTTCATCTTTTAACTGGTCCCAATCATATAATAACAATAACTAT
TCACCATCACCGGCTAATGACAGTTATGTCAGTTTTAGCCCTCTCTCAAC
CTCATCAGATGGCAGCTCAAACTTTAGTCAAGTTTGCGATGGTAACAATA
ATTTCATGTCAACAACTACTTCAAACTTTGTCTCTTTGTCTGACTcatca
aattcaatcttttctGGCGATTCACTTTTCAATTCTGGTAACTCTTCATC
TACTCTTTTCAACAATAATTCCACGTCAAATTTCATGCAGCAAATGTCCA
CGACAGTATCTACGGTGAATTTCACACCAGAAAATTCAACCTCAAGTATT
TTTACTACTCCTGTTAGTGACACCAACAGCTATAGTCAACAAGTCACATC
AGtacctacaaactttacaaatccAATCGCTCATTCGTTGGTCAGCGATG
TTTCCGATATTGGATCTATTATTCCGACATTCTGTTTGAATCGGAATTCA
GGATTGAATAATGACATTTTTGCTTATCTTCAATAATTTTGTAAGAAGAG
CTACTTAGGaatcatattttttataaagttttcttCATGTACATATTCTT
TTATAATTTTAGTGAGAATATAATTTCACTTGAAAAATCAGATAGATGGG
AGAAATTTATTATTAGACGCTACTATAGATGTAGTTTAGTAAAGTACTAC
TTCGTAATCCTTCATAATCTCAATTTGTATTTAGTTGACAGGTAATCTTT
CTCTTATGCCTATTAAAagtttgtaaatatttctttaccGTAAAAAAGAT
TGTACATATATACTTTTTGCATAGATTCA Coding sequence (CDS) from alignment at scaffold_220:232792..236470+ >TCONS_00052803 ID=TCONS_00052803|Name=TCONS_00052803|organism=Clytia hemisphaerica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_220:232792..236470+ (Clytia hemisphaerica)
ATGGCATTTCCAGATTTTCCACTGACGAATGAAGACAACACAGCAACTGC
AGATCAGTACACACTCAGCCACCATAAAGATTTGAATAACAACTCAACGG
AACACGTATCGGCCACCACACAAGAACATATCAGAAACATTTCAAATCTT
AACATTTCGAATAAAAGtatcttggaaaaattcgaagcGATGAACAAATg
tattgattattttcaacaacAGCTGCAAGAACATAAAGGCTCTATCAACG
AACTTGAATTTAGCTTAACCTCGCATAAACGAACTCAAGGACCCAAAGAG
GATACTGATGACGACTTACATTACGAGTCTGGTTGCGGTTTATTCCCTTT
TATCCAAAAATGTCTGTTAAACGAGACCAAATACTACGATACAATTCGCT
GGGTAAACAAGGCCGAACAAGAATTCAAAATCGTGGACCCTGATAATTTA
GCGACACTTTGGGGCCAAGAAAAACGTAAAGAGGGAATGACAAAGCGTAA
ACTGACCAGAAGTTTGGCGTATCTCGTAAACGCGAAAAAGAAGTTACGCC
GCTCATCTTCACGCACATTCATCTATCAAATTATCAATAAATTTGGCAGA
AGTATGTGTCCCTCACCTGAATCTAATTGGGAAGAATCGCCAACCACCCT
TGAGAAATCTCAACCAACGCCCACCATggaacaaatgaaacaaatattAC
GACAAAATCCTAAATATTTACAAGTCTTGATAGAcgttcaaaaacaacaa
aaagaatcAATTGGGAGTAAGAATATCCTAAAAGCTGGTTCCAAACGATC
TTCAAATACACAAGACCAACAGGTTCCAGAGAAATCAGTCAAATTGAACC
AGGAATCTATCTTCAAGACTCCCCAGCAGCAATCACAAAACAACTTCATT
GATACAGCTTCATCTTTTAACTGGTCCCAATCATATAATAACAATAACTA
TTCACCATCACCGGCTAATGACAGTTATGTCAGTTTTAGCCCTCTCTCAA
CCTCATCAGATGGCAGCTCAAACTTTAGTCAAGTTTGCGATGGTAACAAT
AATTTCATGTCAACAACTACTTCAAACTTTGTCTCTTTGTCTGACTcatc
aaattcaatcttttctGGCGATTCACTTTTCAATTCTGGTAACTCTTCAT
CTACTCTTTTCAACAATAATTCCACGTCAAATTTCATGCAGCAAATGTCC
ACGACAGTATCTACGGTGAATTTCACACCAGAAAATTCAACCTCAAGTAT
TTTTACTACTCCTGTTAGTGACACCAACAGCTATAGTCAACAAGTCACAT
CAGtacctacaaactttacaaatccAATCGCTCATTCGTTGGTCAGCGAT
GTTTCCGATATTGGATCTATTATTCCGACATTCTGTTTGAATCGGAATTC
AGGATTGAATAATGACATTTTTGCTTATCTTCAATAAATGGCATTTCCAG
ATTTTCCACTGACGAATGAAGACAACACAGCAACTGCAGATCAGTACACA
CTCAGCCACCATAAAGATTTGAATAACAACTCAACGGAACACGTATCGGC
CACCACACAAGAACATATCAGAAACATTTCAAATCTTAACATTTCGAATA
AAAGtatcttggaaaaattcgaagcGATGAACAAATgtattgattatttt
caacaacAGCTGCAAGAACATAAAGGCTCTATCAACGAACTTGAATTTAG
CTTAACCTCGCATAAACGAACTCAAGGACCCAAAGAGGATACTGATGACG
ACTTACATTACGAGTCTGGTTGCGGTTTATTCCCTTTTATCCAAAAATGT
CTGTTAAACGAGACCAAATACTACGATACAATTCGCTGGGTAAACAAGGC
CGAACAAGAATTCAAAATCGTGGACCCTGATAATTTAGCGACACTTTGGG
GCCAAGAAAAACGTAAAGAGGGAATGACAAAGCGTAAACTGACCAGAAGT
TTGGCGTATCTCGTAAACGCGAAAAAGAAGTTACGCCGCTCATCTTCACG
CACATTCATCTATCAAATTATCAATAAATTTGGCAGAAGTATGTGTCCCT
CACCTGAATCTAATTGGGAAGAATCGCCAACCACCCTTGAGAAATCTCAA
CCAACGCCCACCATggaacaaatgaaacaaatattACGACAAAATCCTAA
ATATTTACAAGTCTTGATAGAcgttcaaaaacaacaaaaagaatcAATTG
GGAGTAAGAATATCCTAAAAGCTGGTTCCAAACGATCTTCAAATACACAA
GACCAACAGGTTCCAGAGAAATCAGTCAAATTGAACCAGGAATCTATCTT
CAAGACTCCCCAGCAGCAATCACAAAACAACTTCATTGATACAGCTTCAT
CTTTTAACTGGTCCCAATCATATAATAACAATAACTATTCACCATCACCG
GCTAATGACAGTTATGTCAGTTTTAGCCCTCTCTCAACCTCATCAGATGG
CAGCTCAAACTTTAGTCAAGTTTGCGATGGTAACAATAATTTCATGTCAA
CAACTACTTCAAACTTTGTCTCTTTGTCTGACTcatcaaattcaatcttt
tctGGCGATTCACTTTTCAATTCTGGTAACTCTTCATCTACTCTTTTCAA
CAATAATTCCACGTCAAATTTCATGCAGCAAATGTCCACGACAGTATCTA
CGGTGAATTTCACACCAGAAAATTCAACCTCAAGTATTTTTACTACTCCT
GTTAGTGACACCAACAGCTATAGTCAACAAGTCACATCAGtacctacaaa
ctttacaaatccAATCGCTCATTCGTTGGTCAGCGATGTTTCCGATATTG
GATCTATTATTCCGACATTCTGTTTGAATCGGAATTCAGGATTGAATAAT
GACATTTTTGCTTATCTTCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052803-exon-scaffold_220-1491911889:232792..233019 | TCONS_00052803-exon-scaffold_220-1491911889:232792..233019 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1510915933:232792..233019 | TCONS_00052803-exon-scaffold_220-1510915933:232792..233019 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1575043694:232792..233019 | TCONS_00052803-exon-scaffold_220-1575043694:232792..233019 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1491911889:234426..234722 | TCONS_00052803-exon-scaffold_220-1491911889:234426..234722 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1510915933:234426..234722 | TCONS_00052803-exon-scaffold_220-1510915933:234426..234722 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1575043694:234426..234722 | TCONS_00052803-exon-scaffold_220-1575043694:234426..234722 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1491911889:235030..236470 | TCONS_00052803-exon-scaffold_220-1491911889:235030..236470 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1510915933:235030..236470 | TCONS_00052803-exon-scaffold_220-1510915933:235030..236470 | Clytia hemisphaerica | exon |
| TCONS_00052803-exon-scaffold_220-1575043694:235030..236470 | TCONS_00052803-exon-scaffold_220-1575043694:235030..236470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:232792..236470 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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